mRNA_P-wetherbeei_contig6084.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6084.1.1
Unique NamemRNA_P-wetherbeei_contig6084.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6084.1.1 vs. uniprot
Match: A0A6G0WSV6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSV6_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.820e-17
Identity = 82/277 (29.60%), Postives = 130/277 (46.93%), Query Frame = 1 
Query:    1 LPPITAQQEAAGRQWLCSRGLIPVGGLLPVGASCLLRDPLRNGTLLCQLVGAVRPAVFAAARLARLV--HWRPSSAAAALENIRRALWLLRLHCAPPLPRCLLAAAEPTLAGDRDAIWGLLWHASQHFPADDNGGDYDGYGESSGCAVGSTSA-----ILAWIGGMDVLDAFAGAGVVPPSLGGLERWFRDGTLLCALTEKAAGRPVAGWLRRPRTVT----SAAANVAKAVAALRGWRPMPRRHLWPGIEAALCQGDWRELVGLLEDMRVASGGGP 798
            LP IT +Q    R+WL S G+     +LP  +  LL+DPLRNG+LLC L+  +         L++ +  H +P++   A EN+  AL  LR    P +P   +A +EP L G    +WGLL+H  +   A           E+   A   T A     ++ W+     LD    A  V P+   ++ + ++G LL  L  +   +PV    +  +T+      A  N+ +A+  LR    MP+R+LW   E  +  G    ++GLL+D++   G  P
Sbjct:  399 LPCITHEQTTRVREWLTSMGI-----MLPTESHPLLQDPLRNGSLLCNLLNRM-------GNLSKPIKAHNKPTALHQAKENVFLALSALRQLNFPSIPPVYIAKSEPILKGQFQFVWGLLYHVVESLQAPPLQTHVQ---ETPVVADTETVANDKILVVDWLRTQGYLDNLEAA-QVHPTFDDIQIYVQNGILLLLLAAQLTQKPV----KIDKTINFSRNEALKNIVEALEQLRSVPNMPQRYLW--CEDKIYAGHSSVILGLLQDIKRIHGDKP 653
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BLAST of mRNA_P-wetherbeei_contig6084.1.1 vs. uniprot
Match: A0A6A5BY66_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BY66_NAEFO)

HSP 1 Score: 83.2 bits (204), Expect = 2.040e-14
Identity = 72/256 (28.12%), Postives = 120/256 (46.88%), Query Frame = 1 
Query:   25 EAAGRQWLCSRGLIPVGGLLPVGASCLLRDPLRNGTLLCQLVGAVRPAVFAAARLARLVHWRPSSAAAALENIRRALWLLRLHCAPPLPRCLLAAAEPTLAGDRDAIWGLLWHASQHFP-ADDNGGDYDGYGE----SSGCAVGSTSAILAWIGGMDVLDAFAGAGVVPPSLGGLERWFRDGTLLCALTEKAAGRPVAGWLRRPRTVTSAAANVAKAVAALRGWRPMPRRHLWPGIEAALCQGDWRELVGLLEDMR 777
            E   + WL     +    LL      LL DPLRNGT LC+LV  +         L    H +P   +    N+  A  +L+      +P   L ++   + G+++ IWGLL+H S+ +P A +N   +    E    SS   +    +I+ W+  + +L        +P +L  ++   R+GT+LC L     G P+ G  R P+ VT+  +N++KA+  LR  + M ++ L    E  +  G+   ++GL ED+R
Sbjct:  148 EKIAKNWLHR---LNFDSLLSKEQRSLLDDPLRNGTFLCELVETLERTT-----LKDYCH-QPKKMSDINRNLDSAFSILKQK---NIPAKYLYSSNKIIRGEKETIWGLLYHISRAYPEAVNNKEQHFSKKEFVLYSSDKMLDLEKSIIWWLRSLGMLPIHK---PIPDTLEDIDEEIRNGTILCDLVGFILGDPIVGVTRNPKIVTACRSNISKAMDLLRQRKKMCQKFL---DEEEILNGNKNYILGLFEDIR 385
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BLAST of mRNA_P-wetherbeei_contig6084.1.1 vs. uniprot
Match: UPI001CFD494F (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFD494F)

HSP 1 Score: 76.3 bits (186), Expect = 4.570e-12
Identity = 70/262 (26.72%), Postives = 115/262 (43.89%), Query Frame = 1 
Query:    7 PITAQQEAAGRQWLCSRGLIPVGGLLPVGASCLLRDPLRNGTLLCQLVGAVRPAVFAAARLARLVHWRPSSAAAALENIRRALWLLRLHCAPPLPRCLLAAAEPTLAGDRDAIWGLLWHASQHFP-ADDNGGDYDGYGE----SSGCAVGSTSAILAWIGGMDVLDAFAGAGVVPPSLGGLERWFRDGTLLCALTEKAAGRPVAGWLRRPRTVTSAAANVAKAVAALRGWRPMPRRHLWPGIEAALCQGDWRELVGLLEDMR 777
            P   + E   + WL     +    LL      LL DPLRNGT  C+LV  +         L    H +P   +    N+  A   L+      +P   L  +   + GD++ IWGLL+H S+ +  A +N   +    E    SS   +    +I+ W+  + +L        +P +   ++   R+GT+LC L     G P+ G  R P+  T+  +N+ KA+  LR  + M ++ L    E  +  G+   ++GL ED+R
Sbjct:  146 PSLNEMEKIAKNWL---HCLNFDSLLSKEQHSLLDDPLRNGTFFCELVETLERTT-----LNEYCH-QPKKMSDINRNLDSAFSKLKQK---NIPAKYLCFSNKIIRGDKETIWGLLYHISKAYSEAINNKEQHFSKKEFVLYSSEKMLELEKSIILWLRSLGMLPIHK---PIPDTFEDIDEEIRNGTILCDLVGFILGDPIIGVTRNPKIPTACRSNIFKAIELLRQRKKMCQKFL---NEEEILNGNKNYILGLFEDIR 389
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6084.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6G0WSV6_9STRA5.820e-1729.60Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A5BY66_NAEFO2.040e-1428.13Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
UPI001CFD494F4.570e-1226.72uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6084contigP-wetherbeei_contig6084:581..1498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008875499.1
PFAMsCH
Model size804
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.36e-17
EggNOG OGs2CZQ5@1|root,2SB7K@2759|Eukaryota
Cds size804
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186887.824487-CDS-P-wetherbeei_contig6084:580..10271683186887.824487-CDS-P-wetherbeei_contig6084:580..1027Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6084 581..1027 +
1683186887.8394992-CDS-P-wetherbeei_contig6084:1141..14981683186887.8394992-CDS-P-wetherbeei_contig6084:1141..1498Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6084 1142..1498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6084.1.1prot_P-wetherbeei_contig6084.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6084 581..1498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6084.1.1

>prot_P-wetherbeei_contig6084.1.1 ID=prot_P-wetherbeei_contig6084.1.1|Name=mRNA_P-wetherbeei_contig6084.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=268bp
LPPITAQQEAAGRQWLCSRGLIPVGGLLPVGASCLLRDPLRNGTLLCQLV
GAVRPAVFAAARLARLVHWRPSSAAAALENIRRALWLLRLHCAPPLPRCL
LAAAEPTLAGDRDAIWGLLWHASQHFPADDNGGDYDGYGESSGCAVGSTS
AILAWIGGMDVLDAFAGAGVVPPSLGGLERWFRDGTLLCALTEKAAGRPV
AGWLRRPRTVTSAAANVAKAVAALRGWRPMPRRHLWPGIEAALCQGDWRE
LVGLLEDMRVASGGGPPA
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mRNA from alignment at P-wetherbeei_contig6084:581..1498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6084.1.1 ID=mRNA_P-wetherbeei_contig6084.1.1|Name=mRNA_P-wetherbeei_contig6084.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=918bp|location=Sequence derived from alignment at P-wetherbeei_contig6084:581..1498+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCCGCCAATAACTGCGCAGCAGGAGGCGGCGGGGCGGCAGTGGCTGTG
CAGCCGTGGGCTGATTCCGGTCGGCGGCCTCCTGCCTGTGGGCGCGTCAT
GTCTCCTGCGGGATCCGCTCCGCAACGGGACGCTGCTGTGCCAGCTGGTC
GGCGCCGTCCGCCCGGCGGTCTTCGCCGCCGCCCGCCTCGCTCGCCTGGT
GCACTGGCGGCCATCGAGCGCCGCCGCCGCCCTCGAGAACATTCGACGGG
CGCTCTGGCTTCTGCGGCTGCACTGTGCGCCGCCGCTGCCGCGCTGCCTC
TTGGCGGCGGCCGAGCCGACGCTGGCCGGCGACCGCGATGCCATTTGGGG
CCTGCTCTGGCACGCTTCGCAGCATTTCCCCGCCGACGACAACGGCGGCG
ATTACGACGGCTACGGCGAAAGCAGCGGCTGCGCTGTTGGCAGTACTGTC
GCCGCGGCTGGCGGCAGAAGTATTGGCGGTGGCGTTAGCGGCGATATCGG
TAGCAACTGTGTCGGCGGCGGCAGCGGCGGAAACTGTCAAGGGCGGTCTA
AAGTTATTGAGTCGGCCATCCTGGCGTGGATCGGCGGGATGGACGTCTTG
GACGCCTTTGCAGGCGCCGGCGTCGTGCCGCCGTCGCTCGGTGGCCTCGA
GCGGTGGTTCCGCGATGGCACCTTGCTCTGCGCGCTGACGGAGAAGGCGG
CAGGGCGGCCGGTGGCCGGCTGGCTGCGGCGACCGCGCACGGTGACTTCG
GCCGCCGCCAACGTTGCCAAGGCGGTGGCGGCCCTCCGCGGCTGGCGGCC
GATGCCGCGGCGGCACCTCTGGCCGGGCATCGAGGCAGCGCTTTGCCAAG
GCGACTGGCGGGAGCTGGTGGGACTCCTGGAGGACATGCGAGTGGCGTCC
GGCGGTGGTCCTCCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6084:581..1498+

>mRNA_P-wetherbeei_contig6084.1.1 ID=mRNA_P-wetherbeei_contig6084.1.1|Name=mRNA_P-wetherbeei_contig6084.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=804bp|location=Sequence derived from alignment at P-wetherbeei_contig6084:581..1498+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCCGCCAATAACTGCGCAGCAGGAGGCGGCGGGGCGGCAGTGGCTGTG
CAGCCGTGGGCTGATTCCGGTCGGCGGCCTCCTGCCTGTGGGCGCGTCAT
GTCTCCTGCGGGATCCGCTCCGCAACGGGACGCTGCTGTGCCAGCTGGTC
GGCGCCGTCCGCCCGGCGGTCTTCGCCGCCGCCCGCCTCGCTCGCCTGGT
GCACTGGCGGCCATCGAGCGCCGCCGCCGCCCTCGAGAACATTCGACGGG
CGCTCTGGCTTCTGCGGCTGCACTGTGCGCCGCCGCTGCCGCGCTGCCTC
TTGGCGGCGGCCGAGCCGACGCTGGCCGGCGACCGCGATGCCATTTGGGG
CCTGCTCTGGCACGCTTCGCAGCATTTCCCCGCCGACGACAACGGCGGCG
ATTACGACGGCTACGGCGAAAGCAGCGGCTGCGCTGTTGGCAGTACTTCG
GCCATCCTGGCGTGGATCGGCGGGATGGACGTCTTGGACGCCTTTGCAGG
CGCCGGCGTCGTGCCGCCGTCGCTCGGTGGCCTCGAGCGGTGGTTCCGCG
ATGGCACCTTGCTCTGCGCGCTGACGGAGAAGGCGGCAGGGCGGCCGGTG
GCCGGCTGGCTGCGGCGACCGCGCACGGTGACTTCGGCCGCCGCCAACGT
TGCCAAGGCGGTGGCGGCCCTCCGCGGCTGGCGGCCGATGCCGCGGCGGC
ACCTCTGGCCGGGCATCGAGGCAGCGCTTTGCCAAGGCGACTGGCGGGAG
CTGGTGGGACTCCTGGAGGACATGCGAGTGGCGTCCGGCGGTGGTCCTCC
GGCG
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