mRNA_P-wetherbeei_contig608.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig608.1.1
Unique NamemRNA_P-wetherbeei_contig608.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig608.1.1 vs. uniprot
Match: A0A835ZDI5_9STRA (Triose-phosphate transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDI5_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 5.620e-22
Identity = 46/69 (66.67%), Postives = 57/69 (82.61%), Query Frame = 1
Query:    4 FSWRQVAFYCLNAIHPITHAVGNTIKRVVLIGVSVVVFQHELTPLSILGSSIAIAGVLLYSLAKNAYAK 210
            + + +VAFYCLN+I   THAVGNT+KRVVL+GVSV+VF H+LTPL   GS++AI GVL+YSL KN YAK
Sbjct:  252 YLYNEVAFYCLNSIDATTHAVGNTVKRVVLLGVSVLVFGHQLTPLGATGSAVAIGGVLVYSLTKNHYAK 320          
BLAST of mRNA_P-wetherbeei_contig608.1.1 vs. uniprot
Match: A0A835YPU6_9STRA (Triosephosphate/phosphate translocator n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU6_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 7.270e-22
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    4 FSWRQVAFYCLNAIHPITHAVGNTIKRVVLIGVSVVVFQHELTPLSILGSSIAIAGVLLYSLAKNAY 204
            + + +VAFYCLNAIHP+TH +GNTIKRVV+I VSV+ F H  TPL ++GS+ AI GVLLYS+ K  Y
Sbjct:  201 YLYNEVAFYCLNAIHPLTHGIGNTIKRVVMIAVSVIAFHHRFTPLGVVGSATAIGGVLLYSIVKGHY 267          
BLAST of mRNA_P-wetherbeei_contig608.1.1 vs. uniprot
Match: A0A6H5KYA6_9PHAE (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYA6_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 8.290e-22
Identity = 45/71 (63.38%), Postives = 58/71 (81.69%), Query Frame = 1
Query:    4 FSWRQVAFYCLNAIHPITHAVGNTIKRVVLIGVSVVVFQHELTPLSILGSSIAIAGVLLYSLAKNAYAKAK 216
            + + +VAFYCL+AIHP+THAV NT+KRV LI VS++VF H+LTPL  +GS++AIAGVLLYSLAK  +   K
Sbjct:  340 YMYNEVAFYCLDAIHPVTHAVANTVKRVFLIAVSILVFGHKLTPLGSIGSAVAIAGVLLYSLAKQKFPNKK 410          
BLAST of mRNA_P-wetherbeei_contig608.1.1 vs. uniprot
Match: A0A7R9YBK2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBK2_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.350e-18
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    4 FSWRQVAFYCLNAIHPITHAVGNTIKRVVLIGVSVVVFQHELTPLSILGSSIAIAGVLLYSLAKNAYAKAK 216
            +S+ +VAF  L+ +HPITHAVGNTIKRVV+I  SV+VF   +TP +I GSS+AI G L+Y+LAKN Y K K
Sbjct:  314 YSYNEVAFLALSQVHPITHAVGNTIKRVVVIIASVIVFGTTMTPTAIAGSSVAILGTLMYALAKNYYQKKK 384          
BLAST of mRNA_P-wetherbeei_contig608.1.1 vs. uniprot
Match: A0A8J6C741_DIALT (TPT domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C741_DIALT)

HSP 1 Score: 85.9 bits (211), Expect = 4.050e-18
Identity = 43/65 (66.15%), Postives = 54/65 (83.08%), Query Frame = 1
Query:    4 FSWRQVAFYCLNAIHPITHAVGNTIKRVVLIGVSVVVFQHELTPLSILGSSIAIAGVLLYSLAKN 198
            + + +VAF CL+ +HPITHAVGNTIKRVV+I  SVVVF  ++TPL+ +GSS+AI GVLLYSLAK 
Sbjct:  303 YLYNEVAFLCLDNVHPITHAVGNTIKRVVIILASVVVFGTKMTPLNQIGSSLAIFGVLLYSLAKQ 367          
BLAST of mRNA_P-wetherbeei_contig608.1.1 vs. uniprot
Match: A0A6H5KC08_9PHAE (TPT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC08_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 6.620e-18
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    4 FSWRQVAFYCLNAIHPITHAVGNTIKRVVLIGVSVVVFQHELTPLSILGSSIAIAGVLLYSLAKNAYAK 210
            + + +VAF CL  +HP+THAVGNT KRV LI  S++VF+ +LTPL+ +GS +AIAGVLLYSL K   AK
Sbjct:  318 YLYNEVAFRCLGVVHPVTHAVGNTFKRVFLIATSIIVFKSKLTPLAAMGSFMAIAGVLLYSLTKEWCAK 386          
BLAST of mRNA_P-wetherbeei_contig608.1.1 vs. uniprot
Match: A0A7S3ALG3_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ALG3_9EUKA)

HSP 1 Score: 80.1 bits (196), Expect = 3.440e-17
Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    4 FSWRQVAFYCLNAIHPITHAVGNTIKRVVLIGVSVVVFQHELTPLSILGSSIAIAGVLLYSLAKNAYAKAKK 219
            + + +VA Y L+A+HPITHAVGNTIKRV+LI  SV  F   +T  S++GS+IA+AGV LYSLAK  + K KK
Sbjct:   98 YLYNEVAMYTLDAVHPITHAVGNTIKRVILILFSVFRFGTPMTMQSVIGSTIAMAGVFLYSLAKMKFKKDKK 169          
BLAST of mRNA_P-wetherbeei_contig608.1.1 vs. uniprot
Match: A0A7S1XYR7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYR7_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 4.040e-17
Identity = 42/65 (64.62%), Postives = 53/65 (81.54%), Query Frame = 1
Query:    4 FSWRQVAFYCLNAIHPITHAVGNTIKRVVLIGVSVVVFQHELTPLSILGSSIAIAGVLLYSLAKN 198
            + + +VAF  LNA+HPITHAVGNTIKRVV+I  SV+ F+ +++  SI+GSSIAI GVLLYSLAK 
Sbjct:  307 YLYNEVAFLALNAVHPITHAVGNTIKRVVIIVASVIFFKTKMSMQSIIGSSIAIFGVLLYSLAKQ 371          
BLAST of mRNA_P-wetherbeei_contig608.1.1 vs. uniprot
Match: A0A1X6PGY9_PORUM (TPT domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PGY9_PORUM)

HSP 1 Score: 82.8 bits (203), Expect = 6.210e-17
Identity = 39/70 (55.71%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    7 SWRQVAFYCLNAIHPITHAVGNTIKRVVLIGVSVVVFQHELTPLSILGSSIAIAGVLLYSLAKNAYAKAK 216
            ++++VAF  L+ +HPITHAV NT KRV+++GVS++VF++ LT   ++GSSIA+ GVLLYS AKN Y + K
Sbjct:  321 TYQEVAFLALSNVHPITHAVANTTKRVIIMGVSILVFKNPLTQNGLIGSSIALLGVLLYSFAKNRYPEKK 390          
BLAST of mRNA_P-wetherbeei_contig608.1.1 vs. uniprot
Match: B5AJS9_GALSU (Sugar-phosphate:phosphate translocator, DMT family n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=B5AJS9_GALSU)

HSP 1 Score: 82.8 bits (203), Expect = 6.620e-17
Identity = 38/69 (55.07%), Postives = 58/69 (84.06%), Query Frame = 1
Query:    4 FSWRQVAFYCLNAIHPITHAVGNTIKRVVLIGVSVVVFQHELTPLSILGSSIAIAGVLLYSLAKNAYAK 210
            + + +VAFY L+++HPITH+VGNT+KRVV+I  S++VF++ +TP + +GS+IAI+GVLLYSL K  Y++
Sbjct:  336 YLYNEVAFYALDSVHPITHSVGNTMKRVVIIITSLLVFKNPITPANAIGSAIAISGVLLYSLTKYYYSQ 404          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig608.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZDI5_9STRA5.620e-2266.67Triose-phosphate transporter family-domain-contain... [more]
A0A835YPU6_9STRA7.270e-2262.69Triosephosphate/phosphate translocator n=1 Tax=Tri... [more]
A0A6H5KYA6_9PHAE8.290e-2263.38TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7R9YBK2_9STRA2.350e-1860.56Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A8J6C741_DIALT4.050e-1866.15TPT domain-containing protein n=2 Tax=Diacronema l... [more]
A0A6H5KC08_9PHAE6.620e-1859.42TPT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3ALG3_9EUKA3.440e-1758.33Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S1XYR7_9STRA4.040e-1764.62Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1X6PGY9_PORUM6.210e-1755.71TPT domain-containing protein n=1 Tax=Porphyra umb... [more]
B5AJS9_GALSU6.620e-1755.07Sugar-phosphate:phosphate translocator, DMT family... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig608contigP-wetherbeei_contig608:625..849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LJY5
Preferred nameSLC35E3
PFAMsTPT
Model size225
Max annot lvl2759|Eukaryota
KEGG koko:K06643,ko:K15285
KEGG Pathwayko01522,ko01524,ko04068,ko04110,ko04115,ko04120,ko04144,ko04151,ko04218,ko04919,ko05165,ko05169,ko05200,ko05202,ko05203,ko05205,ko05206,ko05214,ko05215,ko05218,ko05219,ko05220,map01522,map01524,map04068,map04110,map04115,map04120,map04144,map04151,map04218,map04919,map05165,map05169,map05200,map05202,map05203,map05205,map05206,map05214,map05215,map05218,map05219,map05220
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.67e-22
EggNOG OGsKOG1441@1|root,KOG1441@2759|Eukaryota
EC2.3.2.27
Descriptioncarbohydrate transport
Cds size225
COG categoryZ
BRITEko00000,ko00001,ko01000,ko02000,ko04121,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186887.6900744-CDS-P-wetherbeei_contig608:624..8491683186887.6900744-CDS-P-wetherbeei_contig608:624..849Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig608 625..849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig608.1.1prot_P-wetherbeei_contig608.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig608 625..849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig608.1.1

>prot_P-wetherbeei_contig608.1.1 ID=prot_P-wetherbeei_contig608.1.1|Name=mRNA_P-wetherbeei_contig608.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=75bp
LFSWRQVAFYCLNAIHPITHAVGNTIKRVVLIGVSVVVFQHELTPLSILG
SSIAIAGVLLYSLAKNAYAKAKKA*
back to top

mRNA from alignment at P-wetherbeei_contig608:625..849+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig608.1.1 ID=mRNA_P-wetherbeei_contig608.1.1|Name=mRNA_P-wetherbeei_contig608.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig608:625..849+ (Phaeothamnion wetherbeei SAG_119_79)
CTTTTTTCGTGGCGGCAGGTAGCCTTCTACTGCCTGAACGCGATCCACCC CATTACGCACGCCGTGGGAAACACCATCAAGCGGGTGGTGCTCATTGGCG TGTCGGTGGTCGTCTTCCAGCACGAGCTCACGCCGCTCTCCATTCTCGGC TCCTCCATCGCCATCGCCGGCGTCCTCCTCTACTCCCTCGCCAAGAACGC CTACGCAAAAGCCAAGAAGGCATGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig608:625..849+

>mRNA_P-wetherbeei_contig608.1.1 ID=mRNA_P-wetherbeei_contig608.1.1|Name=mRNA_P-wetherbeei_contig608.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig608:625..849+ (Phaeothamnion wetherbeei SAG_119_79)
CTTTTTTCGTGGCGGCAGGTAGCCTTCTACTGCCTGAACGCGATCCACCC
CATTACGCACGCCGTGGGAAACACCATCAAGCGGGTGGTGCTCATTGGCG
TGTCGGTGGTCGTCTTCCAGCACGAGCTCACGCCGCTCTCCATTCTCGGC
TCCTCCATCGCCATCGCCGGCGTCCTCCTCTACTCCCTCGCCAAGAACGC
CTACGCAAAAGCCAAGAAGGCATGA
back to top