mRNA_P-wetherbeei_contig6076.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6076.3.1
Unique NamemRNA_P-wetherbeei_contig6076.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6076.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6076contigP-wetherbeei_contig6076:2300..3162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size864
Hectar predicted targeting categoryother localisation
Exons1
Cds size645
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186887.6586754-CDS-P-wetherbeei_contig6076:2299..29441683186887.6586754-CDS-P-wetherbeei_contig6076:2299..2944Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6076 2300..2944 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186887.6669273-UTR-P-wetherbeei_contig6076:2944..31621683186887.6669273-UTR-P-wetherbeei_contig6076:2944..3162Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6076 2945..3162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6076.3.1prot_P-wetherbeei_contig6076.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6076 2300..2944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6076.3.1

>prot_P-wetherbeei_contig6076.3.1 ID=prot_P-wetherbeei_contig6076.3.1|Name=mRNA_P-wetherbeei_contig6076.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=215bp
LHDGAAALRRGAGSGRDGRAAPGPLATDGGGVGTGRCRGGSGQPLGGGGA
GGGAAPAAVPRRARRRRRTFGGGRHASRHGGKADDAAPRFARVGLRFWFP
IAGRRFRFWRHGRRLCRSRRGRMLCRGVYGAKGDARRRPPANAYSRSPGR
RGGGGCGGNGHSRGGPRRAVAHGGSVAGVTWRLVLRRLKVRWGGRLHIVR
GRQAMHFSGVRWVQ*
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mRNA from alignment at P-wetherbeei_contig6076:2300..3162+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6076.3.1 ID=mRNA_P-wetherbeei_contig6076.3.1|Name=mRNA_P-wetherbeei_contig6076.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=863bp|location=Sequence derived from alignment at P-wetherbeei_contig6076:2300..3162+ (Phaeothamnion wetherbeei SAG_119_79)
CTTCACGACGGCGCGGCGGCGCTTAGGAGAGGTGCTGGAAGCGGCAGAGA
CGGGCGGGCTGCACCGGGGCCACTGGCGACGGATGGCGGCGGCGTCGGCA
CTGGTCGATGCCGAGGTGGCAGCGGGCAACCGCTGGGAGGCGGCGGCGCA
GGCGGCGGCGCTGCTCCTGCCGCTGTGCCGCGCCGCGCACGCCGGCGTCG
GCGCACCTTCGGCGGTGGTCGGCACGCGAGCCGCCATGGCGGGAAAGCTG
ATGATGCTGCTCCTCGATTCGCCCGTGTCGGGCTTCGATTCTGGTTCCCA
ATTGCCGGACGTCGGTTCCGGTTCTGGCGCCACGGCCGCCGCCTCTGCCG
CAGCCGTCGCGGCAGAATGCTTTGCCGAGGCGTTTACGGTGCTAAAGGTG
ACGCACGGCGACGACCACCCGCTAACGCGTACAGTCGCAGCCCTGGCAGA
CGAGGCGGGGGCGGCTGTGGCGGCAACGGCCACAGCCGCGGCGGGCCGCG
GCGTGCGGTGGCACATGGCGGCAGCGTTGCCGGGGTAACTTGGCGTTTGG
TGTTGCGACGACTGAAAGTGAGGTGGGGCGGCCGGCTGCACATTGTGCGA
GGCAGGCAGGCAATGCACTTCAGCGGCGTGAGGTGGGTGCAGTGACAGTT
GTATTAATGGCGTGATTAACAAGCAGGATAAAAAGCGTGTTCTGTGAGGT
GGGAAGCAGACGGGAAGAAAAGGGAGGAGCGTGATTTGACGGTGCTGGCG
GCAACAACGCACAAGTCGGCTGTTCTTGTGGCGGAGCGGGGGCGAGAAAT
ATGCTCGCTTTATGAGGAAAGGCAGAAGAAAGAGAATAAACGACGAGAAA
CATATAATGCCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6076:2300..3162+

>mRNA_P-wetherbeei_contig6076.3.1 ID=mRNA_P-wetherbeei_contig6076.3.1|Name=mRNA_P-wetherbeei_contig6076.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=645bp|location=Sequence derived from alignment at P-wetherbeei_contig6076:2300..3162+ (Phaeothamnion wetherbeei SAG_119_79)
CTTCACGACGGCGCGGCGGCGCTTAGGAGAGGTGCTGGAAGCGGCAGAGA
CGGGCGGGCTGCACCGGGGCCACTGGCGACGGATGGCGGCGGCGTCGGCA
CTGGTCGATGCCGAGGTGGCAGCGGGCAACCGCTGGGAGGCGGCGGCGCA
GGCGGCGGCGCTGCTCCTGCCGCTGTGCCGCGCCGCGCACGCCGGCGTCG
GCGCACCTTCGGCGGTGGTCGGCACGCGAGCCGCCATGGCGGGAAAGCTG
ATGATGCTGCTCCTCGATTCGCCCGTGTCGGGCTTCGATTCTGGTTCCCA
ATTGCCGGACGTCGGTTCCGGTTCTGGCGCCACGGCCGCCGCCTCTGCCG
CAGCCGTCGCGGCAGAATGCTTTGCCGAGGCGTTTACGGTGCTAAAGGTG
ACGCACGGCGACGACCACCCGCTAACGCGTACAGTCGCAGCCCTGGCAGA
CGAGGCGGGGGCGGCTGTGGCGGCAACGGCCACAGCCGCGGCGGGCCGCG
GCGTGCGGTGGCACATGGCGGCAGCGTTGCCGGGGTAACTTGGCGTTTGG
TGTTGCGACGACTGAAAGTGAGGTGGGGCGGCCGGCTGCACATTGTGCGA
GGCAGGCAGGCAATGCACTTCAGCGGCGTGAGGTGGGTGCAGTGA
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