mRNA_P-wetherbeei_contig6074.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6074.1.1
Unique NamemRNA_P-wetherbeei_contig6074.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6074.1.1 vs. uniprot
Match: A0A835ZHY3_9STRA (Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHY3_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.940e-26
Identity = 51/64 (79.69%), Postives = 56/64 (87.50%), Query Frame = 1
Query:    7 QVVKTLTMKVAYEVTMETHKAGKATVTTAWKNQAETYCLQLQQCGLTASIAPDANFQNNKGGQE 198
            +VVK LTMK+AYE+TMETHKAGKATVT AWK+QAETYCL LQQCGLTASIAPD+ F   KGG E
Sbjct:   53 KVVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLTASIAPDSKF--GKGGDE 114          
BLAST of mRNA_P-wetherbeei_contig6074.1.1 vs. uniprot
Match: D8LIY1_ECTSI (ClpS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIY1_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 6.000e-23
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 1
Query:    7 QVVKTLTMKVAYEVTMETHKAGKATVTTAWKNQAETYCLQLQQCGLTASIAPDANFQNNKGG 192
            +VVK LTMK AYEVTMETHK+GKATVT AWK+++E+YCLQLQQCGLTASIAPD+ F+    G
Sbjct:  134 KVVKKLTMKKAYEVTMETHKSGKATVTQAWKSKSESYCLQLQQCGLTASIAPDSKFEGGGEG 195          
BLAST of mRNA_P-wetherbeei_contig6074.1.1 vs. uniprot
Match: A0A835ZBL6_9STRA (Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBL6_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 9.260e-22
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 1
Query:    7 QVVKTLTMKVAYEVTMETHKAGKATVTTAWKNQAETYCLQLQQCGLTASIA 159
            +VVK LTMK+AYE+TMETHKAGKATVT AWK+QAETYCL LQQCGLTASIA
Sbjct:  100 KVVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLTASIA 150          
BLAST of mRNA_P-wetherbeei_contig6074.1.1 vs. uniprot
Match: A0A7S1RIS0_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RIS0_ALECA)

HSP 1 Score: 75.5 bits (184), Expect = 2.740e-15
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    7 QVVKTLTMKVAYEVTMETHKAGKATVTTAWKNQAETYCLQLQQCGLTASIAPDANFQNNKGGQE 198
            ++V  LT + AY +T E H +GKATV   WK+ +E YC+ LQQ GLT SIAPD+ F+ NKGG +
Sbjct:  135 RIVPHLTRRKAYNITWEAHSSGKATVACVWKSLSEQYCVNLQQLGLTVSIAPDSKFEGNKGGAQ 198          
BLAST of mRNA_P-wetherbeei_contig6074.1.1 vs. uniprot
Match: A0A7R9ULH9_DIALT (Hypothetical protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9ULH9_DIALT)

HSP 1 Score: 69.7 bits (169), Expect = 2.480e-13
Identity = 32/56 (57.14%), Postives = 45/56 (80.36%), Query Frame = 1
Query:    7 QVVKTLTMKVAYEVTMETHKAGKATVTTAWKNQAETYCLQLQQCGLTASIAPDANF 174
            +VVKT++ K AY++T+E H +G ATVTT WK QA++YC+ LQ+ GLT+SIAPD + 
Sbjct:  108 KVVKTVSRKKAYKITIECHMSGIATVTTTWKQQAKSYCMGLQKMGLTSSIAPDPSM 163          
BLAST of mRNA_P-wetherbeei_contig6074.1.1 vs. uniprot
Match: A0A7S2EBD0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EBD0_TRICV)

HSP 1 Score: 70.1 bits (170), Expect = 5.270e-13
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    7 QVVKTLTMKVAYEVTMETHKAGKATVTTAWKNQAETYCLQLQQCGLTASIAPDANFQ 177
            +VV TL  K A+++ METH  GKATVT AW+ +AE YCL LQ+ GLT SIAPD  F+
Sbjct:  166 EVVSTLDRKRAFDICMETHGIGKATVTKAWRQKAEQYCLNLQRQGLTVSIAPDKAFE 222          
BLAST of mRNA_P-wetherbeei_contig6074.1.1 vs. uniprot
Match: A0A1Z5JEC0_FISSO (ClpS domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JEC0_FISSO)

HSP 1 Score: 68.2 bits (165), Expect = 9.810e-13
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    7 QVVKTLTMKVAYEVTMETHKAGKATVTTAWKNQAETYCLQLQQCGLTASIAPDANFQNNKGG 192
            +V+ TL  K A+E+ ++TH  GKAT+T  WK QAE +CL LQ+ GLT SI+PD +F+    G
Sbjct:  101 KVIGTLDRKAAFEICVQTHGIGKATITKTWKKQAEQFCLGLQRQGLTVSISPDEDFEGGHSG 162          
BLAST of mRNA_P-wetherbeei_contig6074.1.1 vs. uniprot
Match: A0A7R9Z3E7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z3E7_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.530e-12
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   10 VVKTLTMKVAYEVTMETHKAGKATVTTAWKNQAETYCLQLQQCGLTASIAPDANFQ 177
            VV TL  K A+++ METH  GKAT+T  W+ +AE YCL LQ+ GLT SIAPD  F+
Sbjct:   86 VVSTLDRKRAFDICMETHGIGKATITKTWRQKAEQYCLNLQRQGLTVSIAPDKAFE 141          
BLAST of mRNA_P-wetherbeei_contig6074.1.1 vs. uniprot
Match: A0A1E7FBP7_9STRA (ClpS domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBP7_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.630e-12
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   19 TLTMKVAYEVTMETHKAGKATVTTAWKNQAETYCLQLQQCGLTASIAPDANFQNNKGG 192
            TL  K ++E+ +ETH  GKATVT  WK QAE +CL LQ+ GLT SI+PD +F+    G
Sbjct:   96 TLDRKASFEICVETHGVGKATVTKTWKKQAEQFCLGLQRQGLTVSISPDEDFEGGHSG 153          
BLAST of mRNA_P-wetherbeei_contig6074.1.1 vs. uniprot
Match: A0A6U6HVZ7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6HVZ7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.620e-12
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   10 VVKTLTMKVAYEVTMETHKAGKATVTTAWKNQAETYCLQLQQCGLTASIAPDANF 174
            VV TL  K A+++ METH  GKAT+T  W+ +AE YCL LQ+ GLT SIAPD  F
Sbjct:   68 VVTTLDRKRAFDICMETHGIGKATITKVWRQKAEQYCLNLQRQGLTVSIAPDKAF 122          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6074.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A835ZHY3_9STRA1.940e-2679.69Ribosomal protein L7/L12, C-terminal/adaptor prote... [more]
D8LIY1_ECTSI6.000e-2374.19ClpS domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835ZBL6_9STRA9.260e-2286.27Ribosomal protein L7/L12, C-terminal/adaptor prote... [more]
A0A7S1RIS0_ALECA2.740e-1553.13Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7R9ULH9_DIALT2.480e-1357.14Hypothetical protein n=1 Tax=Diacronema lutheri Ta... [more]
A0A7S2EBD0_TRICV5.270e-1359.65Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1Z5JEC0_FISSO9.810e-1350.00ClpS domain-containing protein n=1 Tax=Fistulifera... [more]
A0A7R9Z3E7_9STRA1.530e-1257.14Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A1E7FBP7_9STRA1.630e-1253.45ClpS domain-containing protein n=1 Tax=Fragilariop... [more]
A0A6U6HVZ7_9STRA2.620e-1258.18Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6074contigP-wetherbeei_contig6074:144..344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LIY1
PFAMsClpS
Model size201
Max annot lvl2759|Eukaryota
KEGG koko:K06891
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.31e-21
EggNOG OGs2E2N9@1|root,2S9V9@2759|Eukaryota
DescriptionATP-dependent Clp protease adaptor protein ClpS
Cds size174
COG categoryO
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186887.4029784-UTR-P-wetherbeei_contig6074:143..1701683186887.4029784-UTR-P-wetherbeei_contig6074:143..170Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6074 144..170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186887.414993-CDS-P-wetherbeei_contig6074:170..3441683186887.414993-CDS-P-wetherbeei_contig6074:170..344Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6074 171..344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6074.1.1prot_P-wetherbeei_contig6074.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6074 171..344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6074.1.1

>prot_P-wetherbeei_contig6074.1.1 ID=prot_P-wetherbeei_contig6074.1.1|Name=mRNA_P-wetherbeei_contig6074.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=58bp
MKVAYEVTMETHKAGKATVTTAWKNQAETYCLQLQQCGLTASIAPDANFQ
NNKGGQE*
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mRNA from alignment at P-wetherbeei_contig6074:144..344+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6074.1.1 ID=mRNA_P-wetherbeei_contig6074.1.1|Name=mRNA_P-wetherbeei_contig6074.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig6074:144..344+ (Phaeothamnion wetherbeei SAG_119_79)
GTGTGGCAGGTAGTGAAGACGCTGACAATGAAGGTGGCCTACGAGGTGAC CATGGAGACGCACAAGGCCGGCAAGGCCACCGTCACCACGGCGTGGAAGA ACCAGGCCGAGACGTACTGCCTGCAGCTGCAGCAGTGCGGCCTCACGGCC TCCATCGCGCCCGACGCTAACTTCCAGAACAACAAGGGGGGCCAGGAATG A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6074:144..344+

>mRNA_P-wetherbeei_contig6074.1.1 ID=mRNA_P-wetherbeei_contig6074.1.1|Name=mRNA_P-wetherbeei_contig6074.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig6074:144..344+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGTGGCCTACGAGGTGACCATGGAGACGCACAAGGCCGGCAAGGC
CACCGTCACCACGGCGTGGAAGAACCAGGCCGAGACGTACTGCCTGCAGC
TGCAGCAGTGCGGCCTCACGGCCTCCATCGCGCCCGACGCTAACTTCCAG
AACAACAAGGGGGGCCAGGAATGA
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