mRNA_P-wetherbeei_contig6030.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6030.2.1
Unique NamemRNA_P-wetherbeei_contig6030.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6030.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6030contigP-wetherbeei_contig6030:1271..2434 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1164
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_003230.1
Cds size1062
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186884.1153302-UTR-P-wetherbeei_contig6030:1270..13651683186884.1153302-UTR-P-wetherbeei_contig6030:1270..1365Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6030 1271..1365 -
1683186884.13784-UTR-P-wetherbeei_contig6030:2427..24341683186884.13784-UTR-P-wetherbeei_contig6030:2427..2434Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6030 2428..2434 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186884.1278734-CDS-P-wetherbeei_contig6030:1365..24271683186884.1278734-CDS-P-wetherbeei_contig6030:1365..2427Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6030 1366..2427 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6030.2.1prot_P-wetherbeei_contig6030.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6030 1366..2427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6030.2.1

>prot_P-wetherbeei_contig6030.2.1 ID=prot_P-wetherbeei_contig6030.2.1|Name=mRNA_P-wetherbeei_contig6030.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=354bp
MCVHWQLQVNPGFSRIREHNLLAAMGKSVPFYDQEALLEKHKEAQALRSA
LAREERSLLHQLSALEKENADLSAALRLGSIATQPFASSNSSGSSDGGSS
ASASGRAMELRILNREILGRQPELESEIVQWEKKVSLGKEALKKAEKKLE
AVPKRFVQSLESVYTDGRALQQEIARLREGAAKVERRAANSLRVEADEAE
TAREELEDVLQRLAEAEAERNMWAARVRAETAKLDAIRAHRGSIQASLSA
EHGERAFVKAAFLLGARGGSSIPTERVADSVRPFLAAEVDVDDTAIMQAL
RASGIAGAAATADVADHDGGGTSGVEPLSFEQFDTVVRALEGLALDGERA
AYK*
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mRNA from alignment at P-wetherbeei_contig6030:1271..2434-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6030.2.1 ID=mRNA_P-wetherbeei_contig6030.2.1|Name=mRNA_P-wetherbeei_contig6030.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1164bp|location=Sequence derived from alignment at P-wetherbeei_contig6030:1271..2434- (Phaeothamnion wetherbeei SAG_119_79)
GAGAAGGATGTGCGTCCACTGGCAGTTACAGGTGAATCCTGGCTTTTCTA
GAATTCGCGAACACAATTTGCTAGCAGCCATGGGAAAATCGGTTCCGTTC
TACGACCAAGAAGCCTTGCTGGAAAAGCATAAAGAGGCACAGGCTTTGCG
ATCCGCCCTCGCGCGGGAAGAGCGATCTTTGCTGCACCAATTATCAGCGC
TGGAGAAGGAAAATGCTGACCTATCCGCCGCCCTTCGCTTGGGCTCGATT
GCGACGCAGCCCTTCGCTTCTTCAAACTCGTCTGGGTCTTCGGACGGTGG
CAGTAGTGCAAGCGCGTCTGGCCGAGCAATGGAGCTACGAATACTCAACC
GAGAGATTTTGGGGAGACAGCCCGAGTTAGAAAGCGAAATAGTGCAATGG
GAGAAAAAAGTGTCCCTCGGAAAGGAGGCTCTGAAGAAGGCGGAGAAGAA
GCTGGAGGCGGTCCCGAAGCGCTTCGTCCAGAGCCTCGAGTCCGTGTACA
CAGACGGAAGAGCCCTCCAGCAGGAGATCGCGCGCCTGCGCGAAGGCGCC
GCCAAGGTGGAACGCCGCGCTGCCAACAGCCTCCGCGTCGAAGCCGACGA
GGCCGAAACCGCCCGCGAAGAGCTCGAAGATGTCCTGCAGAGGTTGGCAG
AGGCCGAGGCGGAGCGCAACATGTGGGCGGCTCGCGTCCGTGCCGAAACC
GCTAAGCTGGATGCCATTCGGGCGCACCGCGGCAGCATCCAGGCCAGCCT
CTCCGCAGAACACGGCGAGCGCGCCTTCGTCAAGGCCGCCTTTCTGCTCG
GCGCCCGCGGAGGTTCGTCGATCCCGACGGAGCGCGTCGCCGATAGCGTG
CGGCCGTTTTTGGCGGCGGAGGTCGATGTCGACGACACTGCCATCATGCA
GGCGTTGAGGGCCAGCGGGATAGCCGGAGCGGCGGCGACGGCAGATGTGG
CAGACCACGACGGCGGCGGCACGAGCGGGGTGGAGCCATTGAGCTTCGAG
CAGTTCGACACTGTTGTCCGCGCCCTGGAGGGGCTGGCGCTCGACGGCGA
ACGAGCGGCGTACAAATAACGAAAGTTTAAAAGTCTATGAGCTGTCAAAA
TGCGCGTTCGACGCCTCGTTATTTACTTTAGGAGCTGCCGGAGCCTTGCA
GCCATCTCAGTGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6030:1271..2434-

>mRNA_P-wetherbeei_contig6030.2.1 ID=mRNA_P-wetherbeei_contig6030.2.1|Name=mRNA_P-wetherbeei_contig6030.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1062bp|location=Sequence derived from alignment at P-wetherbeei_contig6030:1271..2434- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCGTCCACTGGCAGTTACAGGTGAATCCTGGCTTTTCTAGAATTCG
CGAACACAATTTGCTAGCAGCCATGGGAAAATCGGTTCCGTTCTACGACC
AAGAAGCCTTGCTGGAAAAGCATAAAGAGGCACAGGCTTTGCGATCCGCC
CTCGCGCGGGAAGAGCGATCTTTGCTGCACCAATTATCAGCGCTGGAGAA
GGAAAATGCTGACCTATCCGCCGCCCTTCGCTTGGGCTCGATTGCGACGC
AGCCCTTCGCTTCTTCAAACTCGTCTGGGTCTTCGGACGGTGGCAGTAGT
GCAAGCGCGTCTGGCCGAGCAATGGAGCTACGAATACTCAACCGAGAGAT
TTTGGGGAGACAGCCCGAGTTAGAAAGCGAAATAGTGCAATGGGAGAAAA
AAGTGTCCCTCGGAAAGGAGGCTCTGAAGAAGGCGGAGAAGAAGCTGGAG
GCGGTCCCGAAGCGCTTCGTCCAGAGCCTCGAGTCCGTGTACACAGACGG
AAGAGCCCTCCAGCAGGAGATCGCGCGCCTGCGCGAAGGCGCCGCCAAGG
TGGAACGCCGCGCTGCCAACAGCCTCCGCGTCGAAGCCGACGAGGCCGAA
ACCGCCCGCGAAGAGCTCGAAGATGTCCTGCAGAGGTTGGCAGAGGCCGA
GGCGGAGCGCAACATGTGGGCGGCTCGCGTCCGTGCCGAAACCGCTAAGC
TGGATGCCATTCGGGCGCACCGCGGCAGCATCCAGGCCAGCCTCTCCGCA
GAACACGGCGAGCGCGCCTTCGTCAAGGCCGCCTTTCTGCTCGGCGCCCG
CGGAGGTTCGTCGATCCCGACGGAGCGCGTCGCCGATAGCGTGCGGCCGT
TTTTGGCGGCGGAGGTCGATGTCGACGACACTGCCATCATGCAGGCGTTG
AGGGCCAGCGGGATAGCCGGAGCGGCGGCGACGGCAGATGTGGCAGACCA
CGACGGCGGCGGCACGAGCGGGGTGGAGCCATTGAGCTTCGAGCAGTTCG
ACACTGTTGTCCGCGCCCTGGAGGGGCTGGCGCTCGACGGCGAACGAGCG
GCGTACAAATAA
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