mRNA_P-wetherbeei_contig6023.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6023.3.1
Unique NamemRNA_P-wetherbeei_contig6023.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6023.3.1 vs. uniprot
Match: D8LF21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF21_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.580e-17
Identity = 44/79 (55.70%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:    1 VRALWFTMDSTTPWVEAAAKGGPAGEIKIRECLVAALTRLGITVDVAGSDAEFERLAGADAAARYAFVVVDPWTWAGRG 237
            +R L +TMDS    V  + KGGPAGEI IRE L   LT  G+ V+VA SD +FER A  +A   Y  VVVDPWTWAG+G
Sbjct:    1 MRVLIYTMDSIQTTVAKSMKGGPAGEIIIRESLTRTLTEAGVEVEVATSDGDFERRA--EAMGVYNAVVVDPWTWAGKG 77
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BLAST of mRNA_P-wetherbeei_contig6023.3.1 vs. uniprot
Match: A0A7S3UWN5_HETAK (Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWN5_HETAK)

HSP 1 Score: 75.9 bits (185), Expect = 1.590e-14
Identity = 43/78 (55.13%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:    4 RALWFTMDSTTPWVEAAAKGGPAGEIKIRECLVAALTRLGITVDVAGSDAEFERLAGADAAARYAFVVVDPWTWAGRG 237
            RAL FTMDS T +VE + KGGPAGEI IR  L   L  LG  VD A SDAEF+RL        Y+ ++VDPWT+A +G
Sbjct:   11 RALIFTMDSITSYVEGSRKGGPAGEILIRTALEHGLRELGFAVDTATSDAEFDRLG--KQRDDYSVLIVDPWTYAKKG 86
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BLAST of mRNA_P-wetherbeei_contig6023.3.1 vs. uniprot
Match: A0A482R6T4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482R6T4_9ARCH)

HSP 1 Score: 74.3 bits (181), Expect = 1.920e-14
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:    4 RALWFTMDSTTPWVEAAAKGGPAGEIKIRECLVAALTRLGITVDVAGSDAEFERLAGADAAARYAFVVVDPWT 222
            RA  FTMDS + +VEAAA+GGPAGEI +R  L  AL +LG+ +DVA SDA+FE +    A  +Y F+ +DP T
Sbjct:  146 RAFLFTMDSISAYVEAAARGGPAGEIVVRRSLEHALEQLGVQLDVATSDAQFEHMTRQGAVDQYDFIFLDPMT 218
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BLAST of mRNA_P-wetherbeei_contig6023.3.1 vs. uniprot
Match: A0A7S0PB83_CAFRO (Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PB83_CAFRO)

HSP 1 Score: 49.7 bits (117), Expect = 4.650e-5
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    7 ALWFTMDSTTPWVEAAAKGGPAGEIKIRECLVAALTRLGITVDVAGSDAE 156
            AL FTMD+   +V AA +GGP+GEI +RE L  AL  LG  V  A SD+E
Sbjct:  157 ALLFTMDTLPSYVSAARRGGPSGEILVREGLQTALCELGWRVHTASSDSE 206
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6023.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LF21_ECTSI2.580e-1755.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3UWN5_HETAK1.590e-1455.13Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglu... [more]
A0A482R6T4_9ARCH1.920e-1453.42Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S0PB83_CAFRO4.650e-554.00Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6023contigP-wetherbeei_contig6023:3224..3460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LF21
Model size237
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.23e-15
EggNOG OGs2F12H@1|root,2T24T@2759|Eukaryota
Cds size216
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186883.5159903-UTR-P-wetherbeei_contig6023:3223..32441683186883.5159903-UTR-P-wetherbeei_contig6023:3223..3244Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6023 3224..3244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186883.5275724-CDS-P-wetherbeei_contig6023:3244..34601683186883.5275724-CDS-P-wetherbeei_contig6023:3244..3460Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6023 3245..3460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6023.3.1prot_P-wetherbeei_contig6023.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6023 3245..3460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6023.3.1

>prot_P-wetherbeei_contig6023.3.1 ID=prot_P-wetherbeei_contig6023.3.1|Name=mRNA_P-wetherbeei_contig6023.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
MDSTTPWVEAAAKGGPAGEIKIRECLVAALTRLGITVDVAGSDAEFERLA
GADAAARYAFVVVDPWTWAGRG
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mRNA from alignment at P-wetherbeei_contig6023:3224..3460+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6023.3.1 ID=mRNA_P-wetherbeei_contig6023.3.1|Name=mRNA_P-wetherbeei_contig6023.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig6023:3224..3460+ (Phaeothamnion wetherbeei SAG_119_79)
GTCCGTGCTCTCTGGTTCACCATGGACTCAACGACACCGTGGGTTGAGGC
GGCCGCCAAGGGCGGCCCCGCGGGCGAGATCAAGATCCGCGAGTGCCTCG
TGGCGGCGCTCACCCGCCTCGGCATCACCGTCGACGTCGCCGGCTCCGAC
GCCGAGTTTGAGCGGCTGGCGGGTGCGGATGCCGCAGCCCGTTACGCATT
CGTGGTGGTCGATCCCTGGACCTGGGCCGGCAGGGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6023:3224..3460+

>mRNA_P-wetherbeei_contig6023.3.1 ID=mRNA_P-wetherbeei_contig6023.3.1|Name=mRNA_P-wetherbeei_contig6023.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig6023:3224..3460+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACTCAACGACACCGTGGGTTGAGGCGGCCGCCAAGGGCGGCCCCGC
GGGCGAGATCAAGATCCGCGAGTGCCTCGTGGCGGCGCTCACCCGCCTCG
GCATCACCGTCGACGTCGCCGGCTCCGACGCCGAGTTTGAGCGGCTGGCG
GGTGCGGATGCCGCAGCCCGTTACGCATTCGTGGTGGTCGATCCCTGGAC
CTGGGCCGGCAGGGGT
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