mRNA_P-wetherbeei_contig6018.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6018.1.1
Unique NamemRNA_P-wetherbeei_contig6018.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Match: A0A835Z8X4_9STRA (Replication protein A subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X4_9STRA)

HSP 1 Score: 179 bits (454), Expect = 1.230e-50
Identity = 84/130 (64.62%), Postives = 106/130 (81.54%), Query Frame = 1
Query:    4 GGGSGPVERRNQ-SFFTPISQVNPYQNRWTIKARVTSKGDIRAWSNQRGEGQLFSIEMLDEAGGEIRATFFRDAVDKYYNMIEQGRVYTFSGGQVKVANKQYSSVNNEYEIAFSSNAEIQPVADDPSIRA 390
            GG SGPV+R +  + +TPIS +NPY NRWTIKARVT+K +IR WSNQRGEG L S+++LDE GGE+R TFF+DAVDKY  M+E   VYTFSGG++KVANKQYSS+ N+YEI F+S++ I+ VADD  I+A
Sbjct:  190 GGASGPVQRHDSGASYTPISDLNPYMNRWTIKARVTAKSEIRRWSNQRGEGYLASVDLLDEFGGEVRGTFFKDAVDKYLPMLEVNSVYTFSGGRIKVANKQYSSLQNDYEITFNSDSVIEKVADDKRIKA 319          
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Match: A0A6H5JTK0_9PHAE (Replication protein A subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK0_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.510e-44
Identity = 72/129 (55.81%), Postives = 100/129 (77.52%), Query Frame = 1
Query:    1 GGGGSGPVERRNQ-SFFTPISQVNPYQNRWTIKARVTSKGDIRAWSNQRGEGQLFSIEMLDEAGGEIRATFFRDAVDKYYNMIEQGRVYTFSGGQVKVANKQYSSVNNEYEIAFSSNAEIQPVADDPSI 384
            G   SGPV+R++Q S + PIS +NPYQNRWTIKAR+T KGD+R W+N RG G LFS+++LDE G EI+ TFF+   DK++ ++++G+VY F+GG+VKVANK++SS N EYE+ F S+ +I P+ DD  I
Sbjct:  209 GSSNSGPVQRQSQDSAYMPISAINPYQNRWTIKARITKKGDMRQWNNARGSGTLFSVDLLDEDGSEIKGTFFKQDADKWFQILQEGQVYAFTGGKVKVANKKFSSFNAEYELNFDSSTQINPINDDSRI 337          
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Match: A0A7S2V6G1_9STRA (Replication protein A subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6G1_9STRA)

HSP 1 Score: 155 bits (392), Expect = 5.900e-43
Identity = 70/113 (61.95%), Postives = 90/113 (79.65%), Query Frame = 1
Query:   46 FTPISQVNPYQNRWTIKARVTSKGDIRAWSNQRGEGQLFSIEMLDEAGGEIRATFFRDAVDKYYNMIEQGRVYTFSGGQVKVANKQYSSVNNEYEIAFSSNAEIQPVADDPSI 384
            + PIS +NPYQNRW IKARVT+K  I+ WSN RGEG+L SIE+LD+ G EIR TFF+  VD +YN IEQG+VY+ SGG++K+ANKQYS+V N+YEI F ++ +IQ + DD SI
Sbjct:    3 YQPISSLNPYQNRWVIKARVTNKTPIKTWSNVRGEGKLASIELLDDQGTEIRGTFFKQQVDDWYNRIEQGKVYSISGGRIKIANKQYSNVKNDYEITFDNSTDIQQLDDDSSI 115          
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Match: W7T7F5_9STRA (Replication protein A subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7F5_9STRA)

HSP 1 Score: 155 bits (393), Expect = 7.770e-42
Identity = 75/128 (58.59%), Postives = 96/128 (75.00%), Query Frame = 1
Query:   13 SGPVERRN--QSFFTPISQVNPYQNRWTIKARVTSKGDIRAWSNQRGEGQLFSIEMLDEAGGEIRATFFRDAVDKYYNMIEQGRVYTFSGGQVKVANKQYSSVNNEYEIAFSSNAEIQPVADDPSIRA 390
            SGPV R    QS   PI+ +NPY NRW IKARVTSK DI+ WSN +GEG LFS+++LDE  GEIRATFF++A +K+Y ++EQG VYTFSGG++K A +QYSS+ N YE  F +N+EI  V DD  I++
Sbjct:  231 SGPVVRAGPPQSII-PINDLNPYINRWVIKARVTSKTDIKRWSNAKGEGTLFSVDLLDEFDGEIRATFFKEACEKFYPLLEQGHVYTFSGGKLKPAQRQYSSIRNNYETTFDTNSEIMEVMDDHKIQS 357          
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Match: A0A7S3LLC6_9STRA (Replication protein A subunit n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LLC6_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.290e-41
Identity = 72/136 (52.94%), Postives = 98/136 (72.06%), Query Frame = 1
Query:   10 GSGPVERRNQ---------SFFTPISQVNPYQNRWTIKARVTSKGDIRAWSN-QRGEGQLFSIEMLDEAGGEIRATFFRDAVDKYYNMIEQGRVYTFSGGQVKVANKQYSSVNNEYEIAFSSNAEIQPVADDPSIR 387
            G+GPV R+ Q         +   PI  +NPYQN+W IK R+TSKG I+ W      +G+LFS EM+D  G E+RATFFRDAVD +Y+M++Q +V+TFSGGQVK+ANKQY++ NN+YE+ F  +AE+ PVA+D SI+
Sbjct:  160 GNGPVVRQQQMTRPGPQGDAHILPIRALNPYQNKWVIKGRITSKGGIKTWDKGPNNQGKLFSCEMIDAEGTELRATFFRDAVDNFYDMLQQDQVFTFSGGQVKMANKQYNTTNNDYEVTFGGHAEVVPVANDASIK 295          
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Match: A0A4D9CR27_9STRA (Replication protein A subunit n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CR27_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.740e-41
Identity = 75/128 (58.59%), Postives = 96/128 (75.00%), Query Frame = 1
Query:   13 SGPVERRN--QSFFTPISQVNPYQNRWTIKARVTSKGDIRAWSNQRGEGQLFSIEMLDEAGGEIRATFFRDAVDKYYNMIEQGRVYTFSGGQVKVANKQYSSVNNEYEIAFSSNAEIQPVADDPSIRA 390
            SGPV R    QS   PI+ +NPY NRW IKARVTSK DI+ WSN +GEG LFS+++LDE  GEIRATFF++A +K+Y ++EQG VYTFSGG++K A +QYSS+ N YE  F +N+EI  V DD  I++
Sbjct:  159 SGPVVRAGPPQSII-PINDLNPYINRWVIKARVTSKTDIKRWSNAKGEGTLFSVDLLDEFDGEIRATFFKEACEKFYPLLEQGHVYTFSGGKLKPAQRQYSSIRNNYETTFDTNSEIMEVMDDHKIQS 285          
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Match: A0A7S2MWW4_9STRA (Replication protein A subunit n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MWW4_9STRA)

HSP 1 Score: 152 bits (385), Expect = 8.360e-41
Identity = 67/104 (64.42%), Postives = 86/104 (82.69%), Query Frame = 1
Query:   46 FTPISQVNPYQNRWTIKARVTSKGDIRAWSNQRGEGQLFSIEMLDEAGGEIRATFFRDAVDKYYNMIEQGRVYTFSGGQVKVANKQYSSVNNEYEIAFSSNAEI 357
             TPIS +N Y NRW I+ARVTSK DIR WSN RGEG LFS+E+LD +G +IRATFF++AVDK+Y+M+EQ RVYTFSGG++KVAN QY++  +++E+ F  NAEI
Sbjct:  199 ITPISALNMYMNRWVIRARVTSKSDIRTWSNARGEGSLFSVELLDSSGQDIRATFFKEAVDKFYHMLEQDRVYTFSGGRLKVANAQYNTCKSQFEVTFDQNAEI 302          
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Match: A0A7S2VFV8_9STRA (Replication protein A subunit n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2VFV8_9STRA)

HSP 1 Score: 151 bits (381), Expect = 2.610e-40
Identity = 67/121 (55.37%), Postives = 94/121 (77.69%), Query Frame = 1
Query:    1 GGGGSGPVERRNQSF--FTPISQVNPYQNRWTIKARVTSKGDIRAWSNQRGEGQLFSIEMLDEAGGEIRATFFRDAVDKYYNMIEQGRVYTFSGGQVKVANKQYSSVNNEYEIAFSSNAEI 357
            G G S PV R N S   FTPIS +N Y NRW I+A++T+K +IR WSN +GEG LFS+ +LD +G +++ TFF++AVDK+YN++E+GRVYTFSGG++KVAN QY++  +++EI F  N+EI
Sbjct:  173 GQGSSNPVIRTNASSQSFTPISGLNMYSNRWVIRAKITNKSEIRTWSNAKGEGSLFSVVVLDSSGTDVKCTFFKEAVDKFYNLLEEGRVYTFSGGRLKVANMQYNTCKSQFEITFDQNSEI 293          
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Match: A0A6U0TYW6_9STRA (Replication protein A subunit n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0TYW6_9STRA)

HSP 1 Score: 150 bits (380), Expect = 4.160e-40
Identity = 69/128 (53.91%), Postives = 96/128 (75.00%), Query Frame = 1
Query:    7 GGSGPVER-RNQSFFTPISQVNPYQNRWTIKARVTSKGDIRAWSNQRGEGQLFSIEMLDEAGGEIRATFFRDAVDKYYNMIEQGRVYTFSGGQVKVANKQYSSVNNEYEIAFSSNAEIQPVADDPSIR 387
            G S PV R  +     PI+ +N Y ++WTIKARVTSK  IR WSN RGEG LF++++LD  GGEIRATFF+DA D++  ++++GRVYTFSGG++K+A K+Y+S+ N+YEI F  NA+I+P  D+  I+
Sbjct:  193 GNSAPVARVESDDRIMPIAALNLYNSKWTIKARVTSKSAIRRWSNARGEGHLFNVDLLDGQGGEIRATFFKDACDRFEPLLQEGRVYTFSGGRLKLAKKEYTSIKNDYEITFDRNADIRPSDDEGGIK 320          
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Match: A0A7S0GBI1_9STRA (Replication protein A subunit n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GBI1_9STRA)

HSP 1 Score: 150 bits (378), Expect = 6.310e-40
Identity = 69/125 (55.20%), Postives = 92/125 (73.60%), Query Frame = 1
Query:   22 VERRNQSF----FTPISQVNPYQNRWTIKARVTSKGDIRAWSNQRGEGQLFSIEMLDEAGGEIRATFFRDAVDKYYNMIEQGRVYTFSGGQVKVANKQYSSVNNEYEIAFSSNAEIQPVADDPSI 384
            + R N S      TPISQ+N YQNRWT+KARVTSK DIR WSN RGEG LFS ++LD +G +IR TFF++AVDK++ M++   VYTF+ G++KVAN QY++  + +E++F  NAE+  VADD  I
Sbjct:  157 IVRSNMSLSEDNHTPISQLNMYQNRWTVKARVTSKSDIRTWSNARGEGSLFSCDILDSSGTDIRCTFFKEAVDKFHPMLQMDHVYTFTNGRLKVANAQYNTCKSNFEVSFDQNAEVHEVADDGRI 281          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8X4_9STRA1.230e-5064.62Replication protein A subunit n=1 Tax=Tribonema mi... [more]
A0A6H5JTK0_9PHAE1.510e-4455.81Replication protein A subunit n=1 Tax=Ectocarpus s... [more]
A0A7S2V6G1_9STRA5.900e-4361.95Replication protein A subunit n=1 Tax=Fibrocapsa j... [more]
W7T7F5_9STRA7.770e-4258.59Replication protein A subunit n=1 Tax=Nannochlorop... [more]
A0A7S3LLC6_9STRA1.290e-4152.94Replication protein A subunit n=1 Tax=Aplanochytri... [more]
A0A4D9CR27_9STRA1.740e-4158.59Replication protein A subunit n=1 Tax=Nannochlorop... [more]
A0A7S2MWW4_9STRA8.360e-4164.42Replication protein A subunit n=1 Tax=Helicotheca ... [more]
A0A7S2VFV8_9STRA2.610e-4055.37Replication protein A subunit n=1 Tax=Skeletonema ... [more]
A0A6U0TYW6_9STRA4.160e-4053.91Replication protein A subunit n=1 Tax=Pinguiococcu... [more]
A0A7S0GBI1_9STRA6.310e-4055.20Replication protein A subunit n=1 Tax=Proboscia in... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6018contigP-wetherbeei_contig6018:624..1632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps263415
PFAMsREPA_OB_2,Rep-A_N,Rep_fac-A_C,tRNA_anti-codon
Model size390
Max annot lvl2836|Bacillariophyta
KEGG koko:K07466
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.35e-39
EggNOG OGsCOG1599@1|root,KOG0851@2759|Eukaryota,2XBGI@2836|Bacillariophyta
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-06_001110.1
DescriptionReplication factor-A C terminal domain
Cds size390
COG categoryL
BRITEko00000,ko00001,ko00002,ko03000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186882.9873-CDS-P-wetherbeei_contig6018:623..7531683186882.9873-CDS-P-wetherbeei_contig6018:623..753Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6018 624..753 -
1683186882.9996228-CDS-P-wetherbeei_contig6018:1043..11171683186882.9996228-CDS-P-wetherbeei_contig6018:1043..1117Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6018 1044..1117 -
1683186883.0098963-CDS-P-wetherbeei_contig6018:1446..16321683186883.0098963-CDS-P-wetherbeei_contig6018:1446..1632Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6018 1447..1632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6018.1.1prot_P-wetherbeei_contig6018.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6018 624..1632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6018.1.1

>prot_P-wetherbeei_contig6018.1.1 ID=prot_P-wetherbeei_contig6018.1.1|Name=mRNA_P-wetherbeei_contig6018.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
GGGGSGPVERRNQSFFTPISQVNPYQNRWTIKARVTSKGDIRAWSNQRGE
GQLFSIEMLDEAGGEIRATFFRDAVDKYYNMIEQGRVYTFSGGQVKVANK
QYSSVNNEYEIAFSSNAEIQPVADDPSIRA
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mRNA from alignment at P-wetherbeei_contig6018:624..1632-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6018.1.1 ID=mRNA_P-wetherbeei_contig6018.1.1|Name=mRNA_P-wetherbeei_contig6018.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1009bp|location=Sequence derived from alignment at P-wetherbeei_contig6018:624..1632- (Phaeothamnion wetherbeei SAG_119_79)
GGGGGCGGCGGCAGCGGGCCGGTGGAGCGTCGGAACCAGAGCTTCTTCAC GCCGATCTCGCAGGTGAACCCGTACCAGAACCGGTGGACCATCAAGGCGC GCGTGACGAGCAAAGGCGATATCCGCGCGTGGAGCAACCAGCGCGGGGAG GGGCAGCTCTTCTCCATAGAAATGCTCGACGAGGCGGTGAGTGAACAGAC GGGACGGCTTAGTTGGCAGGACAGGCTGGGTTACTTCGCGATTGGTGTGG CGGTGGTTGTGGCGGCGGCGGCAGTGGTATGACGGCTTGCGCGGCGGCGC GGCGCCGGTAGTAAGGCGGTGGTTTCGCGGTTGGCTCGGTGGCGGTGGCG GTGGTTTTGCAGGCCTGGTGATGGTGGCGGTGGTTTCGCAGTGGTATGGC TGGTGATGGAGGCGACAACGGAGGCGGTGGTTTGTCACCGCTGCGATAGC AATTGTTTGCCAACGTTCTCGATCGCCCCCACCTCCCGCGCTGGCTCTGT TTCCGCCAAAAACAGGGTGGGGAGATCCGGGCGACGTTCTTCCGGGACGC CGTGGACAAGTACTACAACATGATCGAACAGGGCCGAGTGTGAGTTCAGG ATTCCTTTTGGTAGCGCCATCACTGCGGCCCTTGTGGTGGGGCGCCCTCT TTCTTCCATTTCCTCTGATGATTCCGGCTGCCGCTTCTCATCGGGCTCTT TTGGCGGGGGAGTGGTGTGCGAAACGCCGTTTCAAAATTACGGCACCACA TCTCTTCCTCTTTCGTGATCTCCAACTTCTTCTCCGTCTGAAATCCTCCT TTTCTCGCTTGCGTCGGGCCGGAAAAAAATTCGGCTGGAAAACTGTACGG CGAAACGAAATGGCCGAAACTTGCAACAGATACACGTTCAGCGGGGGCCA GGTGAAGGTGGCCAACAAGCAGTACTCGAGCGTCAACAACGAGTACGAGA TAGCCTTCAGCAGCAACGCCGAGATCCAGCCCGTCGCCGACGACCCCTCC ATCCGCGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6018:624..1632-

>mRNA_P-wetherbeei_contig6018.1.1 ID=mRNA_P-wetherbeei_contig6018.1.1|Name=mRNA_P-wetherbeei_contig6018.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig6018:624..1632- (Phaeothamnion wetherbeei SAG_119_79)
GGGGGCGGCGGCAGCGGGCCGGTGGAGCGTCGGAACCAGAGCTTCTTCAC
GCCGATCTCGCAGGTGAACCCGTACCAGAACCGGTGGACCATCAAGGCGC
GCGTGACGAGCAAAGGCGATATCCGCGCGTGGAGCAACCAGCGCGGGGAG
GGGCAGCTCTTCTCCATAGAAATGCTCGACGAGGCGGGTGGGGAGATCCG
GGCGACGTTCTTCCGGGACGCCGTGGACAAGTACTACAACATGATCGAAC
AGGGCCGAGTATACACGTTCAGCGGGGGCCAGGTGAAGGTGGCCAACAAG
CAGTACTCGAGCGTCAACAACGAGTACGAGATAGCCTTCAGCAGCAACGC
CGAGATCCAGCCCGTCGCCGACGACCCCTCCATCCGCGCT
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