mRNA_P-wetherbeei_contig6018.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Match: A0A835Z8X4_9STRA (Replication protein A subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X4_9STRA) HSP 1 Score: 179 bits (454), Expect = 1.230e-50 Identity = 84/130 (64.62%), Postives = 106/130 (81.54%), Query Frame = 1
Query: 4 GGGSGPVERRNQ-SFFTPISQVNPYQNRWTIKARVTSKGDIRAWSNQRGEGQLFSIEMLDEAGGEIRATFFRDAVDKYYNMIEQGRVYTFSGGQVKVANKQYSSVNNEYEIAFSSNAEIQPVADDPSIRA 390
GG SGPV+R + + +TPIS +NPY NRWTIKARVT+K +IR WSNQRGEG L S+++LDE GGE+R TFF+DAVDKY M+E VYTFSGG++KVANKQYSS+ N+YEI F+S++ I+ VADD I+A
Sbjct: 190 GGASGPVQRHDSGASYTPISDLNPYMNRWTIKARVTAKSEIRRWSNQRGEGYLASVDLLDEFGGEVRGTFFKDAVDKYLPMLEVNSVYTFSGGRIKVANKQYSSLQNDYEITFNSDSVIEKVADDKRIKA 319
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Match: A0A6H5JTK0_9PHAE (Replication protein A subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK0_9PHAE) HSP 1 Score: 163 bits (412), Expect = 1.510e-44 Identity = 72/129 (55.81%), Postives = 100/129 (77.52%), Query Frame = 1
Query: 1 GGGGSGPVERRNQ-SFFTPISQVNPYQNRWTIKARVTSKGDIRAWSNQRGEGQLFSIEMLDEAGGEIRATFFRDAVDKYYNMIEQGRVYTFSGGQVKVANKQYSSVNNEYEIAFSSNAEIQPVADDPSI 384
G SGPV+R++Q S + PIS +NPYQNRWTIKAR+T KGD+R W+N RG G LFS+++LDE G EI+ TFF+ DK++ ++++G+VY F+GG+VKVANK++SS N EYE+ F S+ +I P+ DD I
Sbjct: 209 GSSNSGPVQRQSQDSAYMPISAINPYQNRWTIKARITKKGDMRQWNNARGSGTLFSVDLLDEDGSEIKGTFFKQDADKWFQILQEGQVYAFTGGKVKVANKKFSSFNAEYELNFDSSTQINPINDDSRI 337
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Match: A0A7S2V6G1_9STRA (Replication protein A subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6G1_9STRA) HSP 1 Score: 155 bits (392), Expect = 5.900e-43 Identity = 70/113 (61.95%), Postives = 90/113 (79.65%), Query Frame = 1
Query: 46 FTPISQVNPYQNRWTIKARVTSKGDIRAWSNQRGEGQLFSIEMLDEAGGEIRATFFRDAVDKYYNMIEQGRVYTFSGGQVKVANKQYSSVNNEYEIAFSSNAEIQPVADDPSI 384
+ PIS +NPYQNRW IKARVT+K I+ WSN RGEG+L SIE+LD+ G EIR TFF+ VD +YN IEQG+VY+ SGG++K+ANKQYS+V N+YEI F ++ +IQ + DD SI
Sbjct: 3 YQPISSLNPYQNRWVIKARVTNKTPIKTWSNVRGEGKLASIELLDDQGTEIRGTFFKQQVDDWYNRIEQGKVYSISGGRIKIANKQYSNVKNDYEITFDNSTDIQQLDDDSSI 115
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Match: W7T7F5_9STRA (Replication protein A subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7F5_9STRA) HSP 1 Score: 155 bits (393), Expect = 7.770e-42 Identity = 75/128 (58.59%), Postives = 96/128 (75.00%), Query Frame = 1
Query: 13 SGPVERRN--QSFFTPISQVNPYQNRWTIKARVTSKGDIRAWSNQRGEGQLFSIEMLDEAGGEIRATFFRDAVDKYYNMIEQGRVYTFSGGQVKVANKQYSSVNNEYEIAFSSNAEIQPVADDPSIRA 390
SGPV R QS PI+ +NPY NRW IKARVTSK DI+ WSN +GEG LFS+++LDE GEIRATFF++A +K+Y ++EQG VYTFSGG++K A +QYSS+ N YE F +N+EI V DD I++
Sbjct: 231 SGPVVRAGPPQSII-PINDLNPYINRWVIKARVTSKTDIKRWSNAKGEGTLFSVDLLDEFDGEIRATFFKEACEKFYPLLEQGHVYTFSGGKLKPAQRQYSSIRNNYETTFDTNSEIMEVMDDHKIQS 357
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Match: A0A7S3LLC6_9STRA (Replication protein A subunit n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LLC6_9STRA) HSP 1 Score: 154 bits (390), Expect = 1.290e-41 Identity = 72/136 (52.94%), Postives = 98/136 (72.06%), Query Frame = 1
Query: 10 GSGPVERRNQ---------SFFTPISQVNPYQNRWTIKARVTSKGDIRAWSN-QRGEGQLFSIEMLDEAGGEIRATFFRDAVDKYYNMIEQGRVYTFSGGQVKVANKQYSSVNNEYEIAFSSNAEIQPVADDPSIR 387
G+GPV R+ Q + PI +NPYQN+W IK R+TSKG I+ W +G+LFS EM+D G E+RATFFRDAVD +Y+M++Q +V+TFSGGQVK+ANKQY++ NN+YE+ F +AE+ PVA+D SI+
Sbjct: 160 GNGPVVRQQQMTRPGPQGDAHILPIRALNPYQNKWVIKGRITSKGGIKTWDKGPNNQGKLFSCEMIDAEGTELRATFFRDAVDNFYDMLQQDQVFTFSGGQVKMANKQYNTTNNDYEVTFGGHAEVVPVANDASIK 295
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Match: A0A4D9CR27_9STRA (Replication protein A subunit n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CR27_9STRA) HSP 1 Score: 155 bits (393), Expect = 1.740e-41 Identity = 75/128 (58.59%), Postives = 96/128 (75.00%), Query Frame = 1
Query: 13 SGPVERRN--QSFFTPISQVNPYQNRWTIKARVTSKGDIRAWSNQRGEGQLFSIEMLDEAGGEIRATFFRDAVDKYYNMIEQGRVYTFSGGQVKVANKQYSSVNNEYEIAFSSNAEIQPVADDPSIRA 390
SGPV R QS PI+ +NPY NRW IKARVTSK DI+ WSN +GEG LFS+++LDE GEIRATFF++A +K+Y ++EQG VYTFSGG++K A +QYSS+ N YE F +N+EI V DD I++
Sbjct: 159 SGPVVRAGPPQSII-PINDLNPYINRWVIKARVTSKTDIKRWSNAKGEGTLFSVDLLDEFDGEIRATFFKEACEKFYPLLEQGHVYTFSGGKLKPAQRQYSSIRNNYETTFDTNSEIMEVMDDHKIQS 285
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Match: A0A7S2MWW4_9STRA (Replication protein A subunit n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MWW4_9STRA) HSP 1 Score: 152 bits (385), Expect = 8.360e-41 Identity = 67/104 (64.42%), Postives = 86/104 (82.69%), Query Frame = 1
Query: 46 FTPISQVNPYQNRWTIKARVTSKGDIRAWSNQRGEGQLFSIEMLDEAGGEIRATFFRDAVDKYYNMIEQGRVYTFSGGQVKVANKQYSSVNNEYEIAFSSNAEI 357
TPIS +N Y NRW I+ARVTSK DIR WSN RGEG LFS+E+LD +G +IRATFF++AVDK+Y+M+EQ RVYTFSGG++KVAN QY++ +++E+ F NAEI
Sbjct: 199 ITPISALNMYMNRWVIRARVTSKSDIRTWSNARGEGSLFSVELLDSSGQDIRATFFKEAVDKFYHMLEQDRVYTFSGGRLKVANAQYNTCKSQFEVTFDQNAEI 302
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Match: A0A7S2VFV8_9STRA (Replication protein A subunit n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2VFV8_9STRA) HSP 1 Score: 151 bits (381), Expect = 2.610e-40 Identity = 67/121 (55.37%), Postives = 94/121 (77.69%), Query Frame = 1
Query: 1 GGGGSGPVERRNQSF--FTPISQVNPYQNRWTIKARVTSKGDIRAWSNQRGEGQLFSIEMLDEAGGEIRATFFRDAVDKYYNMIEQGRVYTFSGGQVKVANKQYSSVNNEYEIAFSSNAEI 357
G G S PV R N S FTPIS +N Y NRW I+A++T+K +IR WSN +GEG LFS+ +LD +G +++ TFF++AVDK+YN++E+GRVYTFSGG++KVAN QY++ +++EI F N+EI
Sbjct: 173 GQGSSNPVIRTNASSQSFTPISGLNMYSNRWVIRAKITNKSEIRTWSNAKGEGSLFSVVVLDSSGTDVKCTFFKEAVDKFYNLLEEGRVYTFSGGRLKVANMQYNTCKSQFEITFDQNSEI 293
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Match: A0A6U0TYW6_9STRA (Replication protein A subunit n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0TYW6_9STRA) HSP 1 Score: 150 bits (380), Expect = 4.160e-40 Identity = 69/128 (53.91%), Postives = 96/128 (75.00%), Query Frame = 1
Query: 7 GGSGPVER-RNQSFFTPISQVNPYQNRWTIKARVTSKGDIRAWSNQRGEGQLFSIEMLDEAGGEIRATFFRDAVDKYYNMIEQGRVYTFSGGQVKVANKQYSSVNNEYEIAFSSNAEIQPVADDPSIR 387
G S PV R + PI+ +N Y ++WTIKARVTSK IR WSN RGEG LF++++LD GGEIRATFF+DA D++ ++++GRVYTFSGG++K+A K+Y+S+ N+YEI F NA+I+P D+ I+
Sbjct: 193 GNSAPVARVESDDRIMPIAALNLYNSKWTIKARVTSKSAIRRWSNARGEGHLFNVDLLDGQGGEIRATFFKDACDRFEPLLQEGRVYTFSGGRLKLAKKEYTSIKNDYEITFDRNADIRPSDDEGGIK 320
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Match: A0A7S0GBI1_9STRA (Replication protein A subunit n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GBI1_9STRA) HSP 1 Score: 150 bits (378), Expect = 6.310e-40 Identity = 69/125 (55.20%), Postives = 92/125 (73.60%), Query Frame = 1
Query: 22 VERRNQSF----FTPISQVNPYQNRWTIKARVTSKGDIRAWSNQRGEGQLFSIEMLDEAGGEIRATFFRDAVDKYYNMIEQGRVYTFSGGQVKVANKQYSSVNNEYEIAFSSNAEIQPVADDPSI 384
+ R N S TPISQ+N YQNRWT+KARVTSK DIR WSN RGEG LFS ++LD +G +IR TFF++AVDK++ M++ VYTF+ G++KVAN QY++ + +E++F NAE+ VADD I
Sbjct: 157 IVRSNMSLSEDNHTPISQLNMYQNRWTVKARVTSKSDIRTWSNARGEGSLFSCDILDSSGTDIRCTFFKEAVDKFHPMLQMDHVYTFTNGRLKVANAQYNTCKSNFEVSFDQNAEVHEVADDGRI 281 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6018.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6018.1.1 >prot_P-wetherbeei_contig6018.1.1 ID=prot_P-wetherbeei_contig6018.1.1|Name=mRNA_P-wetherbeei_contig6018.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp GGGGSGPVERRNQSFFTPISQVNPYQNRWTIKARVTSKGDIRAWSNQRGEback to top mRNA from alignment at P-wetherbeei_contig6018:624..1632- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6018.1.1 ID=mRNA_P-wetherbeei_contig6018.1.1|Name=mRNA_P-wetherbeei_contig6018.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1009bp|location=Sequence derived from alignment at P-wetherbeei_contig6018:624..1632- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6018:624..1632- >mRNA_P-wetherbeei_contig6018.1.1 ID=mRNA_P-wetherbeei_contig6018.1.1|Name=mRNA_P-wetherbeei_contig6018.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig6018:624..1632- (Phaeothamnion wetherbeei SAG_119_79)back to top |