mRNA_P-wetherbeei_contig6013.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6013.4.1
Unique NamemRNA_P-wetherbeei_contig6013.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6013.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6013contigP-wetherbeei_contig6013:2188..3126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRT4
Preferred nameSEC61G
PFAMsSecE
Model size939
Max annot lvl2759|Eukaryota
KEGG koko:K01262,ko:K07342
KEGG TC3.A.5.7,3.A.5.8,3.A.5.9
KEGG Pathwayko03060,ko04141,ko04145,ko05110,map03060,map04141,map04145,map05110
KEGG ModuleM00401
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001555,GO:0003006,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0006810,GO:0006886,GO:0007276,GO:0007281,GO:0007292,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0009994,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016049,GO:0019953,GO:0022412,GO:0022414,GO:0022804,GO:0022857,GO:0022884,GO:0030154,GO:0030728,GO:0032501,GO:0032502,GO:0032504,GO:0033036,GO:0034613,GO:0040007,GO:0042886,GO:0042887,GO:0044703,GO:0045184,GO:0046907,GO:0048468,GO:0048477,GO:0048588,GO:0048589,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:1904680
Exons1
Evalue0.000851
EggNOG OGsCOG2443@1|root,KOG3498@2759|Eukaryota
EC3.4.11.9
DescriptionP-P-bond-hydrolysis-driven protein transmembrane transporter activity
Cds size510
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02044
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186882.7727044-UTR-P-wetherbeei_contig6013:2187..22991683186882.7727044-UTR-P-wetherbeei_contig6013:2187..2299Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6013 2188..2299 -
1683186882.7941031-UTR-P-wetherbeei_contig6013:2809..31261683186882.7941031-UTR-P-wetherbeei_contig6013:2809..3126Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6013 2810..3126 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186882.783192-CDS-P-wetherbeei_contig6013:2299..28091683186882.783192-CDS-P-wetherbeei_contig6013:2299..2809Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6013 2300..2809 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6013.4.1prot_P-wetherbeei_contig6013.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6013 2300..2809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6013.4.1

>prot_P-wetherbeei_contig6013.4.1 ID=prot_P-wetherbeei_contig6013.4.1|Name=mRNA_P-wetherbeei_contig6013.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
MDVQELVITPLERFLKDSAYLVKKCTKPNKQGKPSTSFRTAIQRLVIPPA
AGAVMIVSGDLFQQTVRIHKFFHHLCLSIFLEISLTLFSPHRVHGSCASN
IRRLLMYGLCRPYGQVADARLPQDPADIVNSTQRGLGEERMGDEEGFRIR
NCPAAEMAAGTKENHYVKG*
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mRNA from alignment at P-wetherbeei_contig6013:2188..3126-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6013.4.1 ID=mRNA_P-wetherbeei_contig6013.4.1|Name=mRNA_P-wetherbeei_contig6013.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=939bp|location=Sequence derived from alignment at P-wetherbeei_contig6013:2188..3126- (Phaeothamnion wetherbeei SAG_119_79)
AGCGACAGCAGAGAGGGGCGTACGCGAGGTGGTCCCATCGTTTTTGACGC
AACGGAAGGTGCCGAAAACCGATCCACAGTAAACGGTAAGAGTGAAGACT
GAGGGAAACTATTGAAGAACTGGGCAAAGCTTCCTACTTCCAACTTTCTG
TTGCCTTCTGAGTTAATGGATGTTGTTGCTGCGCCGCATCCTTCTTCTTC
TATGCGCAAAAGGTTATTTTTCTGGGGAAGGTTGTGGTTGGATTGCTTTA
CCTTTTGTCAGCGCACCCTAACACAGCCGGGCTTCGCATCTATTCCAGCA
GGTAGCTGCGGTCAAACATGGATGTCCAGGAGCTCGTCATTACTCCGTTG
GAGCGGTTCCTGAAGGACTCTGCGTACCTCGTGAAGAAGTGTACGAAGCC
CAACAAACAAGGTAAGCCTAGCACGTCTTTCCGGACAGCAATCCAGAGGT
TGGTAATCCCTCCCGCCGCCGGCGCCGTTATGATCGTCTCTGGAGATCTT
TTCCAGCAGACAGTCCGCATTCACAAATTCTTTCACCACCTGTGCCTTTC
TATTTTTCTCGAAATCTCCTTAACGCTTTTCTCGCCCCACAGAGTTCATG
GTAGTTGCGCGAGCAACATCCGTCGGCTTCTTATGTATGGCCTTTGTCGG
CCTTATGGCCAAGTTGCTGACGCGAGGCTTCCTCAAGATCCTGCGGATAT
AGTGAATAGCACGCAAAGGGGACTAGGGGAGGAAAGGATGGGGGATGAAG
AGGGATTCAGGATCAGAAATTGCCCGGCAGCAGAAATGGCTGCGGGGACT
AAGGAAAACCATTATGTAAAGGGCTGAAGTCCGCCACCCGTGGGCTTCAG
AGCTCACTCCTGGCATAAAACAGGAGAAAGCTACACACACGCAGCGCTCG
ACGGTAAGAGAGTGGAGCGTTTATTCATGTTGATTCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6013:2188..3126-

>mRNA_P-wetherbeei_contig6013.4.1 ID=mRNA_P-wetherbeei_contig6013.4.1|Name=mRNA_P-wetherbeei_contig6013.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig6013:2188..3126- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATGTCCAGGAGCTCGTCATTACTCCGTTGGAGCGGTTCCTGAAGGA
CTCTGCGTACCTCGTGAAGAAGTGTACGAAGCCCAACAAACAAGGTAAGC
CTAGCACGTCTTTCCGGACAGCAATCCAGAGGTTGGTAATCCCTCCCGCC
GCCGGCGCCGTTATGATCGTCTCTGGAGATCTTTTCCAGCAGACAGTCCG
CATTCACAAATTCTTTCACCACCTGTGCCTTTCTATTTTTCTCGAAATCT
CCTTAACGCTTTTCTCGCCCCACAGAGTTCATGGTAGTTGCGCGAGCAAC
ATCCGTCGGCTTCTTATGTATGGCCTTTGTCGGCCTTATGGCCAAGTTGC
TGACGCGAGGCTTCCTCAAGATCCTGCGGATATAGTGAATAGCACGCAAA
GGGGACTAGGGGAGGAAAGGATGGGGGATGAAGAGGGATTCAGGATCAGA
AATTGCCCGGCAGCAGAAATGGCTGCGGGGACTAAGGAAAACCATTATGT
AAAGGGCTGA
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