mRNA_P-wetherbeei_contig6000.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6000.3.1
Unique NamemRNA_P-wetherbeei_contig6000.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6000.3.1 vs. uniprot
Match: D8LE23_ECTSI (Haloacid dehalogenase-like hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE23_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 2.050e-41
Identity = 66/91 (72.53%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:    1 SIPSHPALVFDCDGVILESENLHREAYNAVFREFSVPYAWSEEYYDDLQNKVGGGKPKMRYYFDLNGWPVTSLGPPPESAEAKDALLDTLQ 273
            S P   A++FDCDGVILESE+LHREAYNAVFREF+V Y WS EYYD+LQNKVGGGKPKMRYYF  NGWP + LG PPE+ + KD L+D+LQ
Sbjct:   52 SSPPEWAVIFDCDGVILESESLHREAYNAVFREFAVDYEWSPEYYDELQNKVGGGKPKMRYYFGENGWPKSKLGAPPETDQEKDLLIDSLQ 142
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BLAST of mRNA_P-wetherbeei_contig6000.3.1 vs. uniprot
Match: A0A835YN75_9STRA (Haloacid dehalogenase-like hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN75_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.800e-38
Identity = 59/84 (70.24%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:   22 LVFDCDGVILESENLHREAYNAVFREFSVPYAWSEEYYDDLQNKVGGGKPKMRYYFDLNGWPVTSLGPPPESAEAKDALLDTLQ 273
            L+FDCDGVILESE LHR+AYNAVF+EF V Y WS EYYD+LQN +GGGKPKMR+YF +NGWP + LGPPP  +  +DAL+D LQ
Sbjct:   50 LIFDCDGVILESEGLHRDAYNAVFKEFEVDYNWSPEYYDELQNLIGGGKPKMRHYFGVNGWPASKLGPPPSESADQDALIDALQ 133
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BLAST of mRNA_P-wetherbeei_contig6000.3.1 vs. uniprot
Match: A0A7S0ZDV9_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZDV9_9RHOD)

HSP 1 Score: 136 bits (343), Expect = 1.360e-37
Identity = 61/85 (71.76%), Postives = 71/85 (83.53%), Query Frame = 1 
Query:   19 ALVFDCDGVILESENLHREAYNAVFREFSVPYAWSEEYYDDLQNKVGGGKPKMRYYFDLNGWPVTSLGPPPESAEAKDALLDTLQ 273
            AL+FDCDGVILESE LHREAYN  FREF V Y WSEEYYD+LQN+VGGGKPKMR+YF ++GWP + LG  PES E +D L+D+LQ
Sbjct:   52 ALIFDCDGVILESEALHREAYNQAFREFDVNYHWSEEYYDELQNQVGGGKPKMRHYFGIHGWPDSKLGTSPESQEDRDFLIDSLQ 136
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BLAST of mRNA_P-wetherbeei_contig6000.3.1 vs. uniprot
Match: A0A0G4G1V6_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G1V6_VITBC)

HSP 1 Score: 133 bits (334), Expect = 1.020e-35
Identity = 55/85 (64.71%), Postives = 70/85 (82.35%), Query Frame = 1 
Query:   19 ALVFDCDGVILESENLHREAYNAVFREFSVPYAWSEEYYDDLQNKVGGGKPKMRYYFDLNGWPVTSLGPPPESAEAKDALLDTLQ 273
            AL+FDCDGVI+ESE LHR+AYNA+FREF++PY W+ EYYD LQN +GGG PKMR+YF  NGWP ++LGPPP   + ++ +L TLQ
Sbjct:  102 ALIFDCDGVIIESEGLHRDAYNAMFREFAIPYEWTPEYYDVLQNMIGGGIPKMRHYFTENGWPSSTLGPPPADTDGREGMLKTLQ 186
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BLAST of mRNA_P-wetherbeei_contig6000.3.1 vs. uniprot
Match: A0A5J4YM40_PORPP (Haloacid dehalogenase-like hydrolase domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YM40_PORPP)

HSP 1 Score: 134 bits (338), Expect = 2.410e-35
Identity = 64/92 (69.57%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:    1 SIPSHPALVFDCDGVILESENLHREAYNAVFREFSVPYAWSEEYYDDLQNKVGGGKPKMRYYFDLNGWPVTSLGPPPES-AEAKDALLDTLQ 273
            S+ S  AL+FDCDGVILESE+LHREAYN VFREF++ Y WSEEYYD LQNKVGGGKPKMRYYF+  GWP +SL P P+   EA+  L+D LQ
Sbjct:  212 SLSSARALIFDCDGVILESESLHREAYNQVFREFNIAYEWSEEYYDGLQNKVGGGKPKMRYYFNKYGWPDSSLFPAPQDDEEAQTRLVDELQ 303
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BLAST of mRNA_P-wetherbeei_contig6000.3.1 vs. uniprot
Match: A0A7S2DXJ0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2DXJ0_9DINO)

HSP 1 Score: 124 bits (310), Expect = 1.150e-34
Identity = 57/87 (65.52%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:   19 ALVFDCDGVILESENLHREAYNAVFREFSVPYAWSEEYYDDLQNKVGGGKPKMRYYFDLNGWPVTSLGPPPESAE--AKDALLDTLQ 273
            AL+FDCDGVI ESE LHREAYN VF EF +   WS+EYYD LQN VGGGKPKMRY+F  NGWP + LGP P  ++  A+  L+DTLQ
Sbjct:   31 ALIFDCDGVIAESEELHREAYNLVFDEFELGVTWSKEYYDRLQNTVGGGKPKMRYHFSRNGWPASKLGPAPGESDDAAQSQLIDTLQ 117
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BLAST of mRNA_P-wetherbeei_contig6000.3.1 vs. uniprot
Match: W7T531_9STRA (Haloacid dehalogenase-like hydrolase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T531_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.540e-34
Identity = 56/85 (65.88%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:   19 ALVFDCDGVILESENLHREAYNAVFREFSVPYAWSEEYYDDLQNKVGGGKPKMRYYFDLNGWPVTSLGPPPESAEAKDALLDTLQ 273
            AL+FDCDGVILESE+LHREAYN VFREF + Y W EEYYD LQNKVGGG PKMRY+F  NGWP ++LG  P   + +  +L+ LQ
Sbjct:   60 ALIFDCDGVILESESLHREAYNTVFREFEIDYRWDEEYYDQLQNKVGGGIPKMRYFFGENGWPTSTLGAAPTEEKGRKDMLNALQ 144
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BLAST of mRNA_P-wetherbeei_contig6000.3.1 vs. uniprot
Match: A8IUJ4_CHLRE (Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IUJ4_CHLRE)

HSP 1 Score: 121 bits (303), Expect = 3.620e-32
Identity = 55/92 (59.78%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:   19 ALVFDCDGVILESENLHREAYNAVFREFSV-----PYAWSEEYYDDLQNKVGGGKPKMRYYFDLNGWPVTSLGPPPESAEAKDALLDTLQVC 279
            AL+FDCDGVI+E+E LHR+AYNA F  F       P  WS EYYD LQN VGGGKPKM+++F+ NGWP +  GPPP + EAK+ L+D LQ C
Sbjct:    1 ALLFDCDGVIVETEELHRKAYNAAFAAFECTIDGKPLVWSVEYYDVLQNTVGGGKPKMKWHFNRNGWPASKAGPPPATEEAKNKLVDDLQDC 92
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BLAST of mRNA_P-wetherbeei_contig6000.3.1 vs. uniprot
Match: E1ZSE5_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZSE5_CHLVA)

HSP 1 Score: 122 bits (307), Expect = 4.320e-32
Identity = 58/93 (62.37%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:   19 ALVFDCDGVILESENLHREAYNAVFREFSV-------PYAWSEEYYDDLQNKVGGGKPKMRYYFDLNGWPVTS-LGPPPESAEAKDALLDTLQ 273
            AL+FDCDGVI+ESE++HR AYNA F+ F V       P  W+EEYYDDLQN+VGGGKPKMR+YF LNGWP +  LG  P S EA+  L+D LQ
Sbjct:   51 ALIFDCDGVIVESEDIHRMAYNATFQHFDVRCPGGDGPVVWTEEYYDDLQNRVGGGKPKMRHYFSLNGWPTSGVLGAVPSSEEAQARLIDALQ 143
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BLAST of mRNA_P-wetherbeei_contig6000.3.1 vs. uniprot
Match: A0A7S1TEX1_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TEX1_9RHOD)

HSP 1 Score: 119 bits (298), Expect = 2.780e-31
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:   13 HP--ALVFDCDGVILESENLHREAYNAVFREFSVPYAWSEEYYDDLQNKVGGGKPKMRYYFDLNGWPVTSLGPPPESAEAKDALLDTLQV 276
            HP  AL+FDCDGVILESE+LH +AYN  F  F V Y WS E YDDLQN+VGGGKPKM YYF  +G+P + LGP P + E K+ L+D LQ 
Sbjct:   45 HPRKALIFDCDGVILESESLHLQAYNQAFDNFDVQYRWSVEEYDDLQNRVGGGKPKMHYYFGKHGYPKSLLGPAPVTQEHKNNLVDALQT 134
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6000.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE23_ECTSI2.050e-4172.53Haloacid dehalogenase-like hydrolase n=1 Tax=Ectoc... [more]
A0A835YN75_9STRA1.800e-3870.24Haloacid dehalogenase-like hydrolase n=1 Tax=Tribo... [more]
A0A7S0ZDV9_9RHOD1.360e-3771.76Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A0G4G1V6_VITBC1.020e-3564.71Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A5J4YM40_PORPP2.410e-3569.57Haloacid dehalogenase-like hydrolase domain-contai... [more]
A0A7S2DXJ0_9DINO1.150e-3465.52Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
W7T531_9STRA2.540e-3465.88Haloacid dehalogenase-like hydrolase n=2 Tax=Nanno... [more]
A8IUJ4_CHLRE3.620e-3259.78Predicted protein (Fragment) n=1 Tax=Chlamydomonas... [more]
E1ZSE5_CHLVA4.320e-3262.37Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A7S1TEX1_9RHOD2.780e-3162.22Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6000contigP-wetherbeei_contig6000:3159..3449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LE23
PFAMsHAD_2
Model size291
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.36e-42
EggNOG OGsCOG0637@1|root,KOG2914@2759|Eukaryota
Ec32 ortholog descriptionHaloacid dehalogenase-like hydrolase
Ec32 orthologEc-05_004330.1
Descriptionpseudouridine 5'-phosphatase activity
Cds size291
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186881.9464998-CDS-P-wetherbeei_contig6000:3158..34491683186881.9464998-CDS-P-wetherbeei_contig6000:3158..3449Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6000 3159..3449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6000.3.1prot_P-wetherbeei_contig6000.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6000 3159..3449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6000.3.1

>prot_P-wetherbeei_contig6000.3.1 ID=prot_P-wetherbeei_contig6000.3.1|Name=mRNA_P-wetherbeei_contig6000.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
SIPSHPALVFDCDGVILESENLHREAYNAVFREFSVPYAWSEEYYDDLQN
KVGGGKPKMRYYFDLNGWPVTSLGPPPESAEAKDALLDTLQVCAQE*
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mRNA from alignment at P-wetherbeei_contig6000:3159..3449+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6000.3.1 ID=mRNA_P-wetherbeei_contig6000.3.1|Name=mRNA_P-wetherbeei_contig6000.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig6000:3159..3449+ (Phaeothamnion wetherbeei SAG_119_79)
TCTATTCCCTCCCACCCAGCCCTGGTGTTTGACTGCGACGGCGTGATCCT
CGAGTCGGAGAACCTCCACCGCGAGGCATACAACGCCGTCTTCCGCGAGT
TCTCCGTGCCCTACGCATGGAGCGAGGAGTACTATGACGACCTGCAGAAC
AAGGTCGGCGGAGGCAAGCCGAAAATGCGCTACTACTTCGATCTGAATGG
TTGGCCGGTGACGTCGCTCGGCCCGCCGCCCGAGTCGGCCGAGGCCAAGG
ATGCCCTCCTCGACACTCTCCAGGTCTGTGCACAGGAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6000:3159..3449+

>mRNA_P-wetherbeei_contig6000.3.1 ID=mRNA_P-wetherbeei_contig6000.3.1|Name=mRNA_P-wetherbeei_contig6000.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig6000:3159..3449+ (Phaeothamnion wetherbeei SAG_119_79)
TCTATTCCCTCCCACCCAGCCCTGGTGTTTGACTGCGACGGCGTGATCCT
CGAGTCGGAGAACCTCCACCGCGAGGCATACAACGCCGTCTTCCGCGAGT
TCTCCGTGCCCTACGCATGGAGCGAGGAGTACTATGACGACCTGCAGAAC
AAGGTCGGCGGAGGCAAGCCGAAAATGCGCTACTACTTCGATCTGAATGG
TTGGCCGGTGACGTCGCTCGGCCCGCCGCCCGAGTCGGCCGAGGCCAAGG
ATGCCCTCCTCGACACTCTCCAGGTCTGTGCACAGGAGTAG
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