mRNA_P-wetherbeei_contig6000.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6000.1.1
Unique NamemRNA_P-wetherbeei_contig6000.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6000.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6000contigP-wetherbeei_contig6000:669..2615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1085
Hectar predicted targeting categorysignal peptide
Exons4
Cds size1020
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186881.879113-CDS-P-wetherbeei_contig6000:668..12861683186881.879113-CDS-P-wetherbeei_contig6000:668..1286Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6000 669..1286 -
1683186881.88927-CDS-P-wetherbeei_contig6000:1514..16281683186881.88927-CDS-P-wetherbeei_contig6000:1514..1628Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6000 1515..1628 -
1683186881.8989644-CDS-P-wetherbeei_contig6000:1924..21321683186881.8989644-CDS-P-wetherbeei_contig6000:1924..2132Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6000 1925..2132 -
1683186881.9080234-CDS-P-wetherbeei_contig6000:2470..25501683186881.9080234-CDS-P-wetherbeei_contig6000:2470..2550Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6000 2471..2550 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186881.9171765-UTR-P-wetherbeei_contig6000:2550..26151683186881.9171765-UTR-P-wetherbeei_contig6000:2550..2615Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6000 2551..2615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6000.1.1prot_P-wetherbeei_contig6000.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6000 669..2550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6000.1.1

>prot_P-wetherbeei_contig6000.1.1 ID=prot_P-wetherbeei_contig6000.1.1|Name=mRNA_P-wetherbeei_contig6000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=340bp
MKALAVVLVVAPLCGGLRVHAPHGRPRLSLQRQSHKLRAAASRRVSHPVG
TLRMLRSGSSDPTDDSWGPGSQFPIEQPSTRAADDYIDALKRRGDNADAA
PVDEAERERAIQAALERQRRMLESGAGKNLAQQELSDAAQASGGSRFAQL
LNRAKTRAAPRSWDDPPLPPPPPSQFQQPPPQRYQQQPPPQRYQEHPPPP
QRYQGQPPPPQGYQEQPSPQRYQDVSQASLHSSGGDGDGGGGTDDTTFRR
GLPPLAERTEPTEQYDAARAAAFRQDDGGGGGVRFREMMMRSEGGPSRRP
PRPEDDFDGTGGPRPPGAGGGPGGGGPGGGPKRMTRAEKD
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mRNA from alignment at P-wetherbeei_contig6000:669..2615-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6000.1.1 ID=mRNA_P-wetherbeei_contig6000.1.1|Name=mRNA_P-wetherbeei_contig6000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1947bp|location=Sequence derived from alignment at P-wetherbeei_contig6000:669..2615- (Phaeothamnion wetherbeei SAG_119_79)
AACCAGAGAGGAGAGAAATTTAGTCGTGGTGAGATCTTCGCCGACTCCAG
GGGTGAGAGAAGCCAATGAAGGCCCTTGCTGTGGTCCTTGTAGTGGCGCC
ACTTTGCGGTGGCTTGCGAGTTCATGCTCCGCATGGGAGACCGAGGTGAG
CGAGCGATGCTACCTAACGAAGAGTCAGAATCAGCCAAGCGATTATGCGT
TCAAAGCGCACAGTGGTCCAGGCGATTGATTCAACCGACCTGAGACTTTG
CAGGAGAGCGCCTGTAATGGAAGTTGTGGATGTAAACAGGATCCGTCCTA
GAGCAGGCAGCACTTGATGCAACGCGTCTTTCAGGCATCCTCGATAGTTC
GCATGGTTTCTGCAGTGGATGTCAAACGTATGATGAAAGAATATTTCCTA
TTGCACCCTAGCTTCTCTGTGCGGAAGTGAAGGTCCCTATACCTCCCCTC
AAGCCAAATTTCCTTCATCGCGAAACCTAACAGGTTATCGCTGCAGCGAC
AGTCCCACAAGCTGCGGGCAGCAGCTAGCCGTCGCGTTAGTCACCCTGTA
GGGACGCTGCGGATGCTGCGTAGCGGCAGCAGCGACCCGACGGACGACAG
CTGGGGGCCGGGAAGCCAGTTCCCCATCGAACAGCCGTCGACGCGAGCCG
CCGACGACTACATTGACGCGCTGAAGCGGCGCGGCGACAATGTGAGCCCG
TTCGGAAGCCGCCAACGCTGCCGGAGGGACGACACGTGCATTGGATGCAA
CTAGGAATCCTGTTCTTTGTTATTTCCAGGAGCGGGTCGTTTTCAAATTC
ACGTTCTGACGTTCGACTGCTTTTGAGCACGGTTGCTGCTTCAGCCTTCC
CTTCTCATGATCCATAAGCATTAGAAGACAGCAAATGCTCTCTCGGGTCC
TTCTTAATGACCTTTCTGTCTCGACCGCGCGGTTCACGGCGGCTGCGGCT
GCGGCTGCATCGACGGCGGCGCAACGAACGCTCCAAGGCGGATGCGGCCC
CGGTAGACGAAGCGGAGCGGGAGCGCGCCATCCAGGCGGCCCTGGAGCGG
CAGCGGCGGATGCTCGAGTCCGGCGCCGGAAAGAACCTCGCGCAGCAAGA
GGTGCATCGTTTATTACTTTTGTTGCCCTTTCGAGATGCGGTTAAATGCG
ACCCCTGCTGATTCTTGTCCTTGACCACTGGAGAACAAAATTGTCCACGC
ACTGTGGCATGCAGCGTTTTCCCCCCGACTGCGGACGCCCGGGCTTCTTT
CAACGAGAATCTGTTATGTTTCAATGCGGATACTCCCTGCTGCCACGCCC
TCTTTGCTGCCGTGATGCTGTGCGGACAGCTTTCGGACGCGGCACAGGCC
TCCGGCGGCTCCAGGTTCGCTCAGCTGCTGAACCGCGCGAAGACGCGGGC
AGCACCGCGGTCATGGGATGATCCGCCACTGCCGCCACCGCCGCCATCAC
AATTCCAGCAGCCGCCGCCGCAGCGATACCAGCAGCAGCCTCCGCCACAG
CGGTATCAGGAGCATCCTCCGCCACCGCAACGCTACCAAGGTCAGCCTCC
GCCGCCGCAAGGGTATCAGGAGCAGCCCTCGCCGCAGCGTTATCAGGACG
TCTCCCAGGCTTCGCTGCACTCCTCTGGCGGCGACGGTGACGGCGGCGGC
GGCACGGACGATACAACGTTCCGGCGAGGGCTGCCGCCGCTGGCGGAGCG
GACGGAGCCGACAGAGCAGTACGATGCCGCTCGCGCCGCCGCGTTCCGGC
AGGACGACGGCGGCGGCGGCGGCGTTCGCTTCCGTGAGATGATGATGCGC
TCCGAGGGTGGCCCCTCGCGCCGCCCACCGCGGCCGGAGGACGACTTTGA
CGGCACCGGCGGCCCGCGGCCCCCTGGCGCCGGCGGCGGTCCCGGCGGCG
GCGGCCCCGGCGGCGGGCCGAAGCGGATGACGCGGGCGGAGAAGGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6000:669..2615-

>mRNA_P-wetherbeei_contig6000.1.1 ID=mRNA_P-wetherbeei_contig6000.1.1|Name=mRNA_P-wetherbeei_contig6000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1020bp|location=Sequence derived from alignment at P-wetherbeei_contig6000:669..2615- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGCCCTTGCTGTGGTCCTTGTAGTGGCGCCACTTTGCGGTGGCTT
GCGAGTTCATGCTCCGCATGGGAGACCGAGGTTATCGCTGCAGCGACAGT
CCCACAAGCTGCGGGCAGCAGCTAGCCGTCGCGTTAGTCACCCTGTAGGG
ACGCTGCGGATGCTGCGTAGCGGCAGCAGCGACCCGACGGACGACAGCTG
GGGGCCGGGAAGCCAGTTCCCCATCGAACAGCCGTCGACGCGAGCCGCCG
ACGACTACATTGACGCGCTGAAGCGGCGCGGCGACAATGCGGATGCGGCC
CCGGTAGACGAAGCGGAGCGGGAGCGCGCCATCCAGGCGGCCCTGGAGCG
GCAGCGGCGGATGCTCGAGTCCGGCGCCGGAAAGAACCTCGCGCAGCAAG
AGCTTTCGGACGCGGCACAGGCCTCCGGCGGCTCCAGGTTCGCTCAGCTG
CTGAACCGCGCGAAGACGCGGGCAGCACCGCGGTCATGGGATGATCCGCC
ACTGCCGCCACCGCCGCCATCACAATTCCAGCAGCCGCCGCCGCAGCGAT
ACCAGCAGCAGCCTCCGCCACAGCGGTATCAGGAGCATCCTCCGCCACCG
CAACGCTACCAAGGTCAGCCTCCGCCGCCGCAAGGGTATCAGGAGCAGCC
CTCGCCGCAGCGTTATCAGGACGTCTCCCAGGCTTCGCTGCACTCCTCTG
GCGGCGACGGTGACGGCGGCGGCGGCACGGACGATACAACGTTCCGGCGA
GGGCTGCCGCCGCTGGCGGAGCGGACGGAGCCGACAGAGCAGTACGATGC
CGCTCGCGCCGCCGCGTTCCGGCAGGACGACGGCGGCGGCGGCGGCGTTC
GCTTCCGTGAGATGATGATGCGCTCCGAGGGTGGCCCCTCGCGCCGCCCA
CCGCGGCCGGAGGACGACTTTGACGGCACCGGCGGCCCGCGGCCCCCTGG
CGCCGGCGGCGGTCCCGGCGGCGGCGGCCCCGGCGGCGGGCCGAAGCGGA
TGACGCGGGCGGAGAAGGAC
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