mRNA_P-wetherbeei_contig600.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig600.3.1
Unique NamemRNA_P-wetherbeei_contig600.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig600.3.1 vs. uniprot
Match: A0A836CGF0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGF0_9STRA)

HSP 1 Score: 129 bits (325), Expect = 4.610e-34
Identity = 84/179 (46.93%), Postives = 101/179 (56.42%), Query Frame = 2
Query:   50 VLGCCFLLATGGSAFTASAPQLARVSGRGAPASSSSTGALHMAYVPDGLSAEQWREIRQREQAATQGKNLGAVGVTKFKSRSQRAWQEAGAE----HLFPVDPRAV-----PVEDRPYMMRGGSWDNSDL--KSAG-KRVSWIKADVEYANGGERQAQSVSVFGGGAPFASERLDWTGR 550
            +L    L+A G   F   AP  A  +    PA+SS    L MAY+PDGL+ EQW+ I+++EQ     KNLG VG T FKSRS +AWQEA       HLFPVDP  V     P+   PYM RGGSWD+ DL  K  G K+  W   D  YA GGER  QS+++FG GA      L W GR
Sbjct:    6 ILATVVLVACGAHGF---APSAALPAALARPATSS----LSMAYIPDGLTPEQWKVIKEKEQEKA-SKNLGRVGATSFKSRSFQAWQEAMERGEGGHLFPVDPVKVKRGEIPLSKVPYMQRGGSWDDEDLVKKEKGIKKKEWSPLDKAYATGGERANQSINIFGRGA-----NLPWNGR 171          
BLAST of mRNA_P-wetherbeei_contig600.3.1 vs. uniprot
Match: A0A7S2US33_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US33_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.310e-33
Identity = 63/122 (51.64%), Postives = 84/122 (68.85%), Query Frame = 2
Query:  167 LHMAYVPDGLSAEQWREIRQREQAATQGKNLGAVGVTKFKSRSQRAWQEAGAEHLFPVDPRAVP-----VEDRPYMMRGGSWDNSDLKSAGKR---VSWIKADVEYANGGERQAQSVSVFGG 508
            L M YVP+GL+ EQW++I+++++A     NLG +G  +FKSRS  AWQ AG +HLFPVDP+ V      ++D PYM RGG+WDNSDL   G++   V W   D +YA GG R+ QSVS+FGG
Sbjct:   38 LRMGYVPEGLTPEQWKKIQEKDKAKG---NLGEMGPKRFKSRSFAAWQAAGGKHLFPVDPKKVKTGEIAMKDVPYMQRGGAWDNSDLIKKGEKAPKVEWSDRDKQYAAGGFRKEQSVSIFGG 156          
BLAST of mRNA_P-wetherbeei_contig600.3.1 vs. uniprot
Match: D7G4S4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4S4_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 3.410e-31
Identity = 65/147 (44.22%), Postives = 88/147 (59.86%), Query Frame = 2
Query:  149 SSSTGALHMAYVPDGLSAEQWREIRQREQAATQGKNLGAVGVTKFKSRSQRAWQEAGAEHLFPVDPRAV-----PVEDRPYMMRGGSWDNSDLKSAG----------------------KRVSWIKADVEYANGGERQAQSVSVFGG 508
            SSS+ AL M Y+PDGLS  +W++I+  ++   +  NLG +G ++FKSRS +AWQE+GA HLFPVDP+ V     P++  PYM RGG+WDNSDL S                        K+ +W   D  YA GG ++ QSVS+FGG
Sbjct:   35 SSSSAALKMVYIPDGLSPAEWKKIKDADKKKQE--NLGKLGPSRFKSRSFQAWQESGAGHLFPVDPKKVKSGEIPMDKVPYMQRGGAWDNSDLTSKKGQAAMRARKDKVVLNNKVSKGVKQKAWSSTDKAYAAGGYKKEQSVSIFGG 179          
BLAST of mRNA_P-wetherbeei_contig600.3.1 vs. uniprot
Match: B7FS39_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FS39_PHATC)

HSP 1 Score: 119 bits (297), Expect = 1.780e-30
Identity = 65/140 (46.43%), Postives = 88/140 (62.86%), Query Frame = 2
Query:  167 LHMAYVPDGLSAEQWREIRQREQAATQGKNLGAVGVTKFKSRSQRAWQEAGAE----HLF-PVDPRA------VPVEDRPYMMRGGSWDNSDLKSAGKRVSWIKADVEYANGGERQAQSVSVFGGGAPFASERLDWTGRG 553
            ++  YVPDGL+ EQ+R+I+  +    +GK+LG +G T FKSRS +AWQEA  +    H F P++ +       +  ED PYM+RGGSWDNSD+K A K++ W K D EYA GG ++ QS S+ G G  F     DWTG G
Sbjct:   36 VNAGYVPDGLTEEQYRKIKVSDAKKNKGKDLGRLGPTGFKSRSMQAWQEAFDQGKTGHSFAPLNYKEKMKKGLMKREDVPYMVRGGSWDNSDVKGA-KKLKWSKEDKEYAKGGYKKEQSASILGSGPGF-----DWTGNG 169          
BLAST of mRNA_P-wetherbeei_contig600.3.1 vs. uniprot
Match: B7FS70_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FS70_PHATC)

HSP 1 Score: 118 bits (296), Expect = 2.080e-30
Identity = 64/140 (45.71%), Postives = 86/140 (61.43%), Query Frame = 2
Query:  167 LHMAYVPDGLSAEQWREIRQREQAATQGKNLGAVGVTKFKSRSQRAWQEA----GAEHLF-PVDPRA------VPVEDRPYMMRGGSWDNSDLKSAGKRVSWIKADVEYANGGERQAQSVSVFGGGAPFASERLDWTGRG 553
            L M YVPDGL+ +Q+R+I+  +    +GK LG +G   FKSRS ++WQEA     A H F P+D +       +  ED PYM+RGG+WDNSD+K A K++ W K D +YA GG ++ QS S+ G G  F     DWTG G
Sbjct:   33 LEMGYVPDGLTEDQYRKIKMDDARKAKGKELGRLGPKGFKSRSLQSWQEAFDHGKAGHTFAPIDYKERVKQGLMKKEDVPYMVRGGNWDNSDVKGA-KKLQWSKKDKDYAKGGYKKEQSASILGSGPGF-----DWTGMG 166          
BLAST of mRNA_P-wetherbeei_contig600.3.1 vs. uniprot
Match: A0A6U3BRN0_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3BRN0_9STRA)

HSP 1 Score: 118 bits (295), Expect = 7.260e-30
Identity = 63/137 (45.99%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  176 AYVPDGLSAEQWREIRQREQAATQGKNLGAVGVTKFKSRSQRAWQEA----GAEHLFPV-------DPRAVPVEDRPYMMRGGSWDNSDLKSAGKRVSWIKADVEYANGGERQAQSVSVFGGGAPFASERLDWTGRG 553
            AYVPDG + E +++ ++ E    Q +NLG +G   FKSRS +++QEA     A+HL PV           +  ED PYM RGGSWDNSD+K+A  +  W+ +D EYANGG ++ QSVSV G G+      LDWTG+G
Sbjct:   36 AYVPDGFTPESYKKFKEAEAKKLQKQNLGKLGPKGFKSRSFQSFQEALERGEADHLMPVFNAKERVKKGELRTEDIPYMQRGGSWDNSDVKNAKNKKRWLSSDKEYANGGYKKEQSVSVLGFGSG-----LDWTGKG 167          
BLAST of mRNA_P-wetherbeei_contig600.3.1 vs. uniprot
Match: A0A1Z5KB69_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KB69_FISSO)

HSP 1 Score: 117 bits (292), Expect = 2.150e-29
Identity = 65/134 (48.51%), Postives = 84/134 (62.69%), Query Frame = 2
Query:  179 YVPDGLSAEQWREIRQREQAATQGKNLGAVGVTKFKSRSQRAWQEA----GAEHLFPVDPRAVPV-------EDRPYMMRGGSWDNSDLKSAGKRVSWIKADVEYANGGERQAQSVSVFGGGAPFASERLDWTG 547
            YVPDG + E +++ ++ E+   + KNLG VG   FKSRS +++QEA     A HL PV      V       ED PYM RGGSWDNSD+K A K+V W+++D EYANGG  + QSVS+FG G     + LDWTG
Sbjct:   38 YVPDGFTPESYKKFKEEERKKNEKKNLGRVGPKGFKSRSFQSFQEALERGEATHLLPVMNAKERVKKGELKWEDIPYMQRGGSWDNSDVKGA-KKVRWLQSDKEYANGGYLKEQSVSIFGYG-----QGLDWTG 165          
BLAST of mRNA_P-wetherbeei_contig600.3.1 vs. uniprot
Match: A0A8J5XDF9_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XDF9_DIALT)

HSP 1 Score: 116 bits (290), Expect = 4.720e-29
Identity = 66/134 (49.25%), Postives = 86/134 (64.18%), Query Frame = 2
Query:  173 MAYVPDGLSAEQWREIRQREQAATQGKNLGAVGVTKFKSRSQRAWQEA----GAEHLFPVDPR-----AVPVEDRPYMMR-GGSWDNSDLKSAGKRVSWIKADVEYANGGERQAQSVSVFGGGAPFASERLDWT 544
            M YVPDGL+AE++++I++RE+A    KNLGA G  +F+SRS  A+Q+A     A HLFPVDP+     A+ +ED PYM R  G WD SD+K A KR  W + D  Y NGG  Q+ SVS+FGG +      L WT
Sbjct:   35 MGYVPDGLTAEEYKKIKEREKAQ---KNLGASGTNRFQSRSMYAFQKALESGEAAHLFPVDPKKVKAGAIKLEDVPYMQRRDGRWDQSDVKGAAKR-KWSRWDKAYENGGRAQSTSVSIFGGAS------LPWT 158          
BLAST of mRNA_P-wetherbeei_contig600.3.1 vs. uniprot
Match: A0A835YZT7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZT7_9STRA)

HSP 1 Score: 117 bits (292), Expect = 5.030e-29
Identity = 68/137 (49.64%), Postives = 87/137 (63.50%), Query Frame = 2
Query:  179 YVPDGLSAEQWREIRQREQAATQGKNLGAVGVTKFKSRSQRAWQ---EAG-AEHLFPVDPRAVP-----VEDRPYMMRG-GSWDNSDL---KSAGKRVSWIKADVEYANGGERQAQSVSVFGGGAPFASERLDWTGR 550
            Y+PDGLS EQW+ I+Q+EQA    KNLG VG  KFKSRS +A+    EAG   HLFPVD R V      +   PYMMR  G+WD+SD+   +   K+ +W+ ADV YANGGER AQSV+++G      S  + W G+
Sbjct:   48 YIPDGLSLEQWQAIKQKEQAKA-SKNLGRVGTVKFKSRSFQAFHQSLEAGHGGHLFPVDLRKVKSGEIGLSQVPYMMRRRGAWDDSDMVDKEPGAKKKNWLPADVAYANGGERAAQSVNLYG-----TSVNMPWRGK 178          
BLAST of mRNA_P-wetherbeei_contig600.3.1 vs. uniprot
Match: A0A7S2SHZ4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHZ4_9STRA)

HSP 1 Score: 113 bits (283), Expect = 6.820e-29
Identity = 59/112 (52.68%), Postives = 77/112 (68.75%), Query Frame = 2
Query:  152 SSTGALHMAYVPDGLSAEQWREIRQREQAATQGKNLGAVGVTKFKSRSQRAWQEA----GAEHLFPVDPRAVP-----VEDRPYMMRGGSWDNSDLKSAGKRVSWIKADVEY 460
            S TG + M YVPDGLS EQW +I+++E+AA  G  LG VG   FKSRS +++ EA     A+HL PVDPR V      +ED PYM RGGSWDNSD+K A K+  W+K+D+++
Sbjct:   10 SRTGVVRMGYVPDGLSPEQWEKIKKKERAAKTG--LGRVGARGFKSRSMQSFHEALELGEAKHLMPVDPRLVKSGKIKMEDVPYMQRGGSWDNSDVKGA-KKKRWLKSDMQF 118          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig600.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CGF0_9STRA4.610e-3446.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2US33_9STRA1.310e-3351.64Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7G4S4_ECTSI3.410e-3144.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
B7FS39_PHATC1.780e-3046.43Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
B7FS70_PHATC2.080e-3045.71Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A6U3BRN0_9STRA7.260e-3045.99Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A1Z5KB69_FISSO2.150e-2948.51Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A8J5XDF9_DIALT4.720e-2949.25Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A835YZT7_9STRA5.030e-2949.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SHZ4_9STRA6.820e-2952.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig600contigP-wetherbeei_contig600:4358..4916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G4S4
Model size559
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons1
Evalue4.28e-32
EggNOG OGs2D1KJ@1|root,2S4WB@2759|Eukaryota
Cds size534
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186881.756487-UTR-P-wetherbeei_contig600:4357..43821683186881.756487-UTR-P-wetherbeei_contig600:4357..4382Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig600 4358..4382 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186881.7664876-CDS-P-wetherbeei_contig600:4382..49161683186881.7664876-CDS-P-wetherbeei_contig600:4382..4916Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig600 4383..4916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig600.3.1prot_P-wetherbeei_contig600.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig600 4383..4916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig600.3.1

>prot_P-wetherbeei_contig600.3.1 ID=prot_P-wetherbeei_contig600.3.1|Name=mRNA_P-wetherbeei_contig600.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=178bp
MPSASSMTVLGCCFLLATGGSAFTASAPQLARVSGRGAPASSSSTGALHM
AYVPDGLSAEQWREIRQREQAATQGKNLGAVGVTKFKSRSQRAWQEAGAE
HLFPVDPRAVPVEDRPYMMRGGSWDNSDLKSAGKRVSWIKADVEYANGGE
RQAQSVSVFGGGAPFASERLDWTGRGY*
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mRNA from alignment at P-wetherbeei_contig600:4358..4916+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig600.3.1 ID=mRNA_P-wetherbeei_contig600.3.1|Name=mRNA_P-wetherbeei_contig600.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=559bp|location=Sequence derived from alignment at P-wetherbeei_contig600:4358..4916+ (Phaeothamnion wetherbeei SAG_119_79)
CTCTCTCTTTCACAAGCCAACCACAATGCCTTCGGCTTCGAGCATGACCG TCCTGGGCTGCTGCTTCCTGCTCGCAACGGGAGGTTCCGCGTTCACGGCC TCCGCCCCGCAGCTGGCGCGGGTGTCGGGTCGCGGGGCTCCTGCCTCGAG CTCTTCTACCGGCGCGCTGCACATGGCCTACGTTCCCGACGGGCTCTCGG CGGAGCAATGGCGCGAGATTCGGCAGCGCGAGCAGGCGGCGACGCAGGGC AAAAACCTCGGCGCCGTCGGCGTGACCAAGTTCAAGAGCCGCAGCCAGCG GGCGTGGCAGGAGGCGGGGGCTGAGCACCTCTTCCCCGTGGACCCGCGGG CCGTGCCTGTGGAAGACCGCCCGTACATGATGCGGGGCGGTTCGTGGGAC AACAGCGACCTCAAGTCAGCGGGGAAGCGCGTCAGCTGGATCAAGGCCGA CGTCGAATACGCTAACGGCGGTGAGCGGCAGGCGCAGAGCGTATCCGTCT TCGGCGGCGGCGCGCCTTTCGCCTCAGAGCGGCTGGACTGGACCGGCCGC GGTTATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig600:4358..4916+

>mRNA_P-wetherbeei_contig600.3.1 ID=mRNA_P-wetherbeei_contig600.3.1|Name=mRNA_P-wetherbeei_contig600.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig600:4358..4916+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTTCGGCTTCGAGCATGACCGTCCTGGGCTGCTGCTTCCTGCTCGC
AACGGGAGGTTCCGCGTTCACGGCCTCCGCCCCGCAGCTGGCGCGGGTGT
CGGGTCGCGGGGCTCCTGCCTCGAGCTCTTCTACCGGCGCGCTGCACATG
GCCTACGTTCCCGACGGGCTCTCGGCGGAGCAATGGCGCGAGATTCGGCA
GCGCGAGCAGGCGGCGACGCAGGGCAAAAACCTCGGCGCCGTCGGCGTGA
CCAAGTTCAAGAGCCGCAGCCAGCGGGCGTGGCAGGAGGCGGGGGCTGAG
CACCTCTTCCCCGTGGACCCGCGGGCCGTGCCTGTGGAAGACCGCCCGTA
CATGATGCGGGGCGGTTCGTGGGACAACAGCGACCTCAAGTCAGCGGGGA
AGCGCGTCAGCTGGATCAAGGCCGACGTCGAATACGCTAACGGCGGTGAG
CGGCAGGCGCAGAGCGTATCCGTCTTCGGCGGCGGCGCGCCTTTCGCCTC
AGAGCGGCTGGACTGGACCGGCCGCGGTTATTGA
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