mRNA_P-wetherbeei_contig6.10.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6.10.1
Unique NamemRNA_P-wetherbeei_contig6.10.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6.10.1 vs. uniprot
Match: A0A7R9UH25_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UH25_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.570e-24
Identity = 48/104 (46.15%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    1 MYVIALGTGGIKPNMATFCAEQFDETSPRDQEDLRTFWTSFYWRAVHTFFPTPCIQFRHALLRYSINLGALVAYTAVSYVCQFGIPAAGGEEWGFVIGYSIPCV 312
            +Y+IA GTGGIKPN++TF A+QFD+ + +D+++  +F+  FYW                     SINLGAL++YT V+Y+CQ+GI   GGE+WGF IG+ IP V
Sbjct:   89 LYIIAFGTGGIKPNVSTFGADQFDDDNEQDKKEKESFFNWFYW---------------------SINLGALISYTLVAYICQYGIAGLGGEDWGFFIGFIIPAV 171          
BLAST of mRNA_P-wetherbeei_contig6.10.1 vs. uniprot
Match: A0A6H5J9H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H6_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.920e-24
Identity = 49/104 (47.12%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 MYVIALGTGGIKPNMATFCAEQFDETSPRDQEDLRTFWTSFYWRAVHTFFPTPCIQFRHALLRYSINLGALVAYTAVSYVCQFGIPAAGGEEWGFVIGYSIPCV 312
            +Y++ALGTGGIK +++ F A+QFDE  P D  + ++F+  FYW                     SINLGALV++T VSYVCQ+G+P  GG +WGF+ GYSIPC+
Sbjct:  184 IYLLALGTGGIKSSVSVFGADQFDEDDPADVNEKQSFFNWFYW---------------------SINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCI 266          
BLAST of mRNA_P-wetherbeei_contig6.10.1 vs. uniprot
Match: A0A7S3GU63_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU63_9STRA)

HSP 1 Score: 102 bits (254), Expect = 4.120e-24
Identity = 48/104 (46.15%), Postives = 64/104 (61.54%), Query Frame = 1
Query:    1 MYVIALGTGGIKPNMATFCAEQFDETSPRDQEDLRTFWTSFYWRAVHTFFPTPCIQFRHALLRYSINLGALVAYTAVSYVCQFGIPAAGGEEWGFVIGYSIPCV 312
            MYV+ALG GGIKPN +T  A+QFD    +D ++ + F++ FYW                     SINLGAL+AYT V+Y+CQ+G+P  GGE WGF +GY IP +
Sbjct:  124 MYVVALGAGGIKPNCSTMGADQFDLKIEQDAKEAKQFFSYFYW---------------------SINLGALLAYTIVAYICQYGLPGLGGETWGFFVGYLIPTI 206          
BLAST of mRNA_P-wetherbeei_contig6.10.1 vs. uniprot
Match: A0A835YK04_9STRA (POT family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK04_9STRA)

HSP 1 Score: 101 bits (251), Expect = 8.170e-23
Identity = 45/104 (43.27%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 MYVIALGTGGIKPNMATFCAEQFDETSPRDQEDLRTFWTSFYWRAVHTFFPTPCIQFRHALLRYSINLGALVAYTAVSYVCQFGIPAAGGEEWGFVIGYSIPCV 312
            +Y IA+GTGGIKPN++TF A+QF ++ P+D E+  +F+  FY                      SINLGAL++Y+ V+Y+CQ+G+   GGE WGF +G++IPC+
Sbjct:   71 IYTIAIGTGGIKPNVSTFGADQFKDSCPQDTEEKASFFLYFYG---------------------SINLGALISYSLVAYICQYGVGGLGGEPWGFTVGFTIPCI 153          
BLAST of mRNA_P-wetherbeei_contig6.10.1 vs. uniprot
Match: A0A482UWI9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UWI9_9ARCH)

HSP 1 Score: 90.9 bits (224), Expect = 2.100e-21
Identity = 47/116 (40.52%), Postives = 69/116 (59.48%), Query Frame = 1
Query:   16 LGTGGIKPNMATFCAEQFDETSPRDQEDLRTFWT-----------SFYWRAVHTFF---PTPCIQFRHALLR---YSINLGALVAYTAVSYVCQFGIPAAGGEEWGFVIGYSIPCV 312
            +GTGGIKPN+ T  A+QFD+   +D+++  +F+              Y    HT +    TP    R  L R   +SINLG+L++YT V+Y+CQ+G+P  GGE+WGF +GY IP +
Sbjct:    8 VGTGGIKPNVCTMGADQFDDRYTQDRKEKESFFNWLVLIAVVNNYYIYCHKPHTAYFIRHTPYTSNRFYLYRRFYWSINLGSLISYTLVAYICQYGLPFLGGEKWGFFVGYCIPAI 123          
BLAST of mRNA_P-wetherbeei_contig6.10.1 vs. uniprot
Match: D7G1M8_ECTSI (Amino acid/peptide transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M8_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 3.180e-18
Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = 1
Query:    4 YVIALGTGGIKPNMATFCAEQFDETSPRDQEDLRTFWTSFYWRAVHTFFPTPCIQFRHALLRYSINLGALVAYTAVSYVCQFGIPAAGGEEWGFVIGYSIPCV 312
            +V  LG   IK +++ F A+QF+E  P D ++ ++F+  FYW                     SINLGALV++T VSYVCQ+G+   GG +WGF+ GYSIPC+
Sbjct:   17 HVPPLGGAWIKSSVSVFGADQFEEDDPADVKEKQSFFNWFYW---------------------SINLGALVSFTLVSYVCQYGLSFLGGPDWGFMAGYSIPCI 98          
BLAST of mRNA_P-wetherbeei_contig6.10.1 vs. uniprot
Match: W7TJG8_9STRA (Peptide transporter ptr1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJG8_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 5.050e-11
Identity = 34/104 (32.69%), Postives = 56/104 (53.85%), Query Frame = 1
Query:    1 MYVIALGTGGIKPNMATFCAEQFDETSPRDQEDLRTFWTSFYWRAVHTFFPTPCIQFRHALLRYSINLGALVAYTAVSYVCQFGIPAAGGEEWGFVIGYSIPCV 312
            +Y +ALG GGIKPN++TF A+QFD  S   +  + +F+  FY                      +IN GAL+++T V  + Q+G+   GG ++ F +G+S+  +
Sbjct:  181 IYTMALGDGGIKPNVSTFGADQFDSRSAEGKRAMESFFNIFYA---------------------AINCGALISFTLVVSITQYGVSWIGGMDYRFSVGFSVAAI 263          
BLAST of mRNA_P-wetherbeei_contig6.10.1 vs. uniprot
Match: A0A7S1CW14_9CHLO (Hypothetical protein n=1 Tax=Picochlorum oklahomense TaxID=249345 RepID=A0A7S1CW14_9CHLO)

HSP 1 Score: 66.6 bits (161), Expect = 1.270e-10
Identity = 36/104 (34.62%), Postives = 57/104 (54.81%), Query Frame = 1
Query:    1 MYVIALGTGGIKPNMATFCAEQFDETSPRDQEDLRTFWTSFYWRAVHTFFPTPCIQFRHALLRYSINLGALVAYTAVSYVCQFGIPAAGGEEWGFVIGYSIPCV 312
            +YV+ALGTGGIKPN++ F A+QFDE  PRD+++ ++F+  FY                     +SIN+G+L+A T + ++          E   + IG+ IP +
Sbjct:  142 LYVVALGTGGIKPNVSAFGADQFDELDPRDRKEKKSFFNWFY---------------------FSINVGSLLAVTGIVWI---------QENVSWAIGFVIPAI 215          
BLAST of mRNA_P-wetherbeei_contig6.10.1 vs. uniprot
Match: A0A812NLG0_9DINO (NPF8.1 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812NLG0_9DINO)

HSP 1 Score: 65.5 bits (158), Expect = 3.250e-10
Identity = 34/101 (33.66%), Postives = 53/101 (52.48%), Query Frame = 1
Query:    1 MYVIALGTGGIKPNMATFCAEQFDETSPRDQEDLRTFWTSFYWRAVHTFFPTPCIQFRHALLRYSINLGALVAYTAVSYVCQFGIPAAGGEEWGFVIGYSI 303
            M ++ALGTGGIKPN++ F A+QFD  SP  ++    F+T FY                      +INLGAL++Y  ++ +C  G+P    ++ G+   Y +
Sbjct:  138 MGLLALGTGGIKPNISNFGADQFDSRSPEGRKAREEFYTQFYT---------------------AINLGALLSYGFLTTLCSSGLPGVVPQDMGYCFAYFV 217          
BLAST of mRNA_P-wetherbeei_contig6.10.1 vs. uniprot
Match: A0A5B8MGU7_9CHLO (Proton-dependent oligopeptide transporter n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MGU7_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 3.260e-10
Identity = 40/104 (38.46%), Postives = 56/104 (53.85%), Query Frame = 1
Query:    1 MYVIALGTGGIKPNMATFCAEQFDETSPRDQEDLRTFWTSFYWRAVHTFFPTPCIQFRHALLRYSINLGALVAYTAVSYVCQFGIPAAGGEEWGFVIGYSIPCV 312
            +Y+IA+GTGGIKPN+++F A+QFDE  P+ +++  +F+  FY                       INLG+LVA TAV YV Q         E  + IG+ IP V
Sbjct:  191 LYIIAVGTGGIKPNVSSFGADQFDENIPKQKKEKESFFNWFYL---------------------FINLGSLVASTAVVYVQQ---------EISWTIGFLIPAV 264          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9UH25_9STRA2.570e-2446.15Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6H5J9H6_9PHAE2.920e-2447.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3GU63_9STRA4.120e-2446.15Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A835YK04_9STRA8.170e-2343.27POT family-domain-containing protein n=1 Tax=Tribo... [more]
A0A482UWI9_9ARCH2.100e-2140.52Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
D7G1M8_ECTSI3.180e-1841.75Amino acid/peptide transporter n=1 Tax=Ectocarpus ... [more]
W7TJG8_9STRA5.050e-1132.69Peptide transporter ptr1 n=1 Tax=Nannochloropsis g... [more]
A0A7S1CW14_9CHLO1.270e-1034.62Hypothetical protein n=1 Tax=Picochlorum oklahomen... [more]
A0A812NLG0_9DINO3.250e-1033.66NPF8.1 protein n=2 Tax=Symbiodinium TaxID=2949 Rep... [more]
A0A5B8MGU7_9CHLO3.260e-1038.46Proton-dependent oligopeptide transporter n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6contigP-wetherbeei_contig6:20445..21067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G1M8
PFAMsPTR2
Model size312
Max annot lvl2759|Eukaryota
KEGG koko:K14638,ko:K14639
KEGG TC2.A.17.3
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.21e-19
EggNOG OGsCOG3104@1|root,KOG1237@2759|Eukaryota
Descriptiontransmembrane transporter activity
Cds size312
COG categoryE
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186881.1272883-CDS-P-wetherbeei_contig6:20444..206251683186881.1272883-CDS-P-wetherbeei_contig6:20444..20625Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6 20445..20625 -
1683186881.1483934-CDS-P-wetherbeei_contig6:20936..210671683186881.1483934-CDS-P-wetherbeei_contig6:20936..21067Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6 20937..21067 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6.10.1prot_P-wetherbeei_contig6.10.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6 20445..21067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6.10.1

>prot_P-wetherbeei_contig6.10.1 ID=prot_P-wetherbeei_contig6.10.1|Name=mRNA_P-wetherbeei_contig6.10.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
MYVIALGTGGIKPNMATFCAEQFDETSPRDQEDLRTFWTSFYWRAVHTFF
PTPCIQFRHALLRYSINLGALVAYTAVSYVCQFGIPAAGGEEWGFVIGYS
IPCV
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mRNA from alignment at P-wetherbeei_contig6:20445..21067-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6.10.1 ID=mRNA_P-wetherbeei_contig6.10.1|Name=mRNA_P-wetherbeei_contig6.10.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=623bp|location=Sequence derived from alignment at P-wetherbeei_contig6:20445..21067- (Phaeothamnion wetherbeei SAG_119_79)
ATGTACGTCATTGCGCTGGGCACAGGCGGGATCAAGCCAAACATGGCAAC CTTTTGCGCGGAGCAGTTCGACGAAACATCGCCACGCGACCAAGAGGACT TGCGCACCTTCTGGACGTCGTTTTACTGGAGGTGAGGGAGCCGGGCGGCA CGGCACGGGGTGGCATGGGCGGTCCTGCCAGCAGATTCTACTTTTATTGC TTGGTGCCTTCAAGGTTGAAGTCTGATAATGTGATATGAGAGTGTGAAAA TGCCGTGTCTACAGGTGGTCCAGCGCCTGTTGCTACCGGCTGTTTTTTAG GTTTTGGCTATCCATGTGACGCTATCAGCTCTCGTCTCCCGTTGCACATC GTCTAGCGTTCCTGCATTTTCCATTTCGGTTGCTGCGTGACTTTTGCTGT CAACTTCCCTCCGAAAACGAATTGAGAATGGCTTGGCGGAAGAGCCGTTC ACACATTTTTCCCCACGCCTTGCATTCAATTCCGACATGCTCTGCTCCGT TACAGCATCAATCTCGGCGCGCTGGTGGCCTACACCGCAGTCTCGTACGT TTGCCAGTTCGGCATCCCGGCGGCGGGTGGCGAGGAGTGGGGCTTCGTCA TCGGCTACAGCATTCCCTGCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6:20445..21067-

>mRNA_P-wetherbeei_contig6.10.1 ID=mRNA_P-wetherbeei_contig6.10.1|Name=mRNA_P-wetherbeei_contig6.10.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig6:20445..21067- (Phaeothamnion wetherbeei SAG_119_79)
ATGTACGTCATTGCGCTGGGCACAGGCGGGATCAAGCCAAACATGGCAAC
CTTTTGCGCGGAGCAGTTCGACGAAACATCGCCACGCGACCAAGAGGACT
TGCGCACCTTCTGGACGTCGTTTTACTGGAGAGCCGTTCACACATTTTTC
CCCACGCCTTGCATTCAATTCCGACATGCTCTGCTCCGTTACAGCATCAA
TCTCGGCGCGCTGGTGGCCTACACCGCAGTCTCGTACGTTTGCCAGTTCG
GCATCCCGGCGGCGGGTGGCGAGGAGTGGGGCTTCGTCATCGGCTACAGC
ATTCCCTGCGTC
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