mRNA_P-wetherbeei_contig6.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6.1.1
Unique NamemRNA_P-wetherbeei_contig6.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6.1.1 vs. uniprot
Match: UPI001ED87873 (activated RNA polymerase II transcriptional coactivator p15 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED87873)

HSP 1 Score: 56.6 bits (135), Expect = 1.960e-6
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:  712 HLSPRKAATVSVFQDTVLIDLRCYVKNQYNGGPQHTKKGISLTVDQWDRLKAAAPEIDRQVEQM 903
            HL   K A V  FQ  V +D+R Y   Q +G  +  KKGISL+VDQW R+K   PEID  +++M
Sbjct:   48 HLEKMKYAKVRTFQGKVYVDIREYY--QSDGKMKPGKKGISLSVDQWRRIKELMPEIDEAIKEM 109
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BLAST of mRNA_P-wetherbeei_contig6.1.1 vs. uniprot
Match: A0A8H4AHM5_GIGMA (Activated RNA polymerase II transcriptional coactivator p15-like n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4AHM5_GIGMA)

HSP 1 Score: 57.4 bits (137), Expect = 2.860e-6
Identity = 26/63 (41.27%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:  715 LSPRKAATVSVFQDTVLIDLRCYVKNQYNGGPQHTKKGISLTVDQWDRLKAAAPEIDRQVEQM 903
            LS ++  T+  F++ VLID R Y K++ +G    TKKGISL +DQW++LK    +ID ++++ 
Sbjct:   91 LSDKRRVTIREFKNMVLIDFREYYKSKDDGEYHPTKKGISLQIDQWNKLKELIDDIDEEIKKF 153
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BLAST of mRNA_P-wetherbeei_contig6.1.1 vs. uniprot
Match: A0A397U2M4_9GLOM (Transcriptional Coactivator p15-domain-containing protein (Fragment) n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397U2M4_9GLOM)

HSP 1 Score: 54.7 bits (130), Expect = 3.780e-6
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:  715 LSPRKAATVSVFQDTVLIDLRCYVKNQYNGGPQHTKKGISLTVDQWDRLKAAAPEIDRQVEQM 903
            LS ++  T+  F++ VL+D R Y K++ +G     KKGISL +DQW++LK    +ID +V++ 
Sbjct:   10 LSDKRRVTIREFKNMVLVDFREYFKSKDDGEYHPGKKGISLQIDQWNKLKELIDDIDEEVKKF 72
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BLAST of mRNA_P-wetherbeei_contig6.1.1 vs. uniprot
Match: F6ZYN8_CIOIN (Activated RNA polymerase II transcriptional coactivator p15 n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F6ZYN8_CIOIN)

HSP 1 Score: 52.8 bits (125), Expect = 5.930e-5
Identity = 26/67 (38.81%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:  703 EPMHLSPRKAATVSVFQDTVLIDLRCYVKNQYNGGPQHTKKGISLTVDQWDRLKAAAPEIDRQVEQM 903
            E +HL   K   V  F+D +LID+R +   Q +G  +  KKGISL+ +QW++LK +  E+D +++Q 
Sbjct:   58 EKIHLGKMKFIDVRTFKDKILIDIREHY--QKDGEIKPGKKGISLSTEQWEKLKMSMEEVDSRIQQF 122
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BLAST of mRNA_P-wetherbeei_contig6.1.1 vs. uniprot
Match: A0A397TM97_9GLOM (Transcriptional Coactivator p15-domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TM97_9GLOM)

HSP 1 Score: 52.0 bits (123), Expect = 7.300e-5
Identity = 25/64 (39.06%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:  715 LSPRKAATVSVFQDTVLIDLRCYVKNQYNGGPQHTKKGISLTVDQWDRLKAAAPEIDRQVEQMR 906
            LS +K  T+  +++ VLID R + + + +G  Q TKKGISL +DQW++LK    +ID ++ +++
Sbjct:   42 LSNKKRVTIREWKNMVLIDFREFFETK-DGNIQPTKKGISLQLDQWNKLKELIHDIDNEIRKLK 104
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001ED878731.960e-646.88activated RNA polymerase II transcriptional coacti... [more]
A0A8H4AHM5_GIGMA2.860e-641.27Activated RNA polymerase II transcriptional coacti... [more]
A0A397U2M4_9GLOM3.780e-639.68Transcriptional Coactivator p15-domain-containing ... [more]
F6ZYN8_CIOIN5.930e-538.81Activated RNA polymerase II transcriptional coacti... [more]
A0A397TM97_9GLOM7.300e-539.06Transcriptional Coactivator p15-domain-containing ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6contigP-wetherbeei_contig6:2179..3891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7719.XP_002128161.1
Preferred nameSUB1
PFAMsPC4
Model size1346
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
GOsGO:0000981,GO:0001205,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003700,GO:0003705,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0060260,GO:0060261,GO:0060395,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2000142,GO:2000144,GO:2001141
Exons2
Evalue3.89e-06
EggNOG OGsKOG2712@1|root,KOG2712@2759|Eukaryota,3A20Q@33154|Opisthokonta,3BQG5@33208|Metazoa,3DBFI@33213|Bilateria,48ET1@7711|Chordata
Ec32 ortholog descriptionssDNA-binding transcriptional regulator
Ec32 orthologEc-19_002360.1
Descriptionpositive regulation of transcription initiation from RNA polymerase II promoter
Cds size738
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186880.8630953-UTR-P-wetherbeei_contig6:2178..25621683186880.8630953-UTR-P-wetherbeei_contig6:2178..2562Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6 2179..2562 +
1683186880.908395-UTR-P-wetherbeei_contig6:3667..38911683186880.908395-UTR-P-wetherbeei_contig6:3667..3891Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6 3668..3891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186880.8754117-CDS-P-wetherbeei_contig6:2562..29311683186880.8754117-CDS-P-wetherbeei_contig6:2562..2931Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6 2563..2931 +
1683186880.8984785-CDS-P-wetherbeei_contig6:3298..36671683186880.8984785-CDS-P-wetherbeei_contig6:3298..3667Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6 3299..3667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6.1.1prot_P-wetherbeei_contig6.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6 2563..3667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6.1.1

>prot_P-wetherbeei_contig6.1.1 ID=prot_P-wetherbeei_contig6.1.1|Name=mRNA_P-wetherbeei_contig6.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=246bp
MSINTATRALGAVHFGEVHRLILQQIGAACRWSSSRSTVEAGGFWESVKR
DAEKSESYKRAKAGDGPGYRNFNPQAAASSSPSSEAGPAAGAGDDSWANS
LVFDMTEPMHLSPRKAATVSVFQDTVLIDLRCYVKNQYNGGPQHTKKGIS
LTVDQWDRLKAAAPEIDRQVEQMRWSLVKNLAPPADDDDGDGADGDGDDG
SSDGGSRDGDSRDGDSSGGRGSSGSDGGGESLRRGGEHNIGVVRP*
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mRNA from alignment at P-wetherbeei_contig6:2179..3891+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6.1.1 ID=mRNA_P-wetherbeei_contig6.1.1|Name=mRNA_P-wetherbeei_contig6.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1713bp|location=Sequence derived from alignment at P-wetherbeei_contig6:2179..3891+ (Phaeothamnion wetherbeei SAG_119_79)
CCTGCTGCGTTCGAGCATCATAGAAGACACGTATGACAGGCTGTTGCAAG
CGTCAGATAAGGAGTGCAGTCGCTTATTTTGCCATCCTTAGGGGATACTG
CTCGTTTCAAGAAATGTTTTTCCTTTCCAAATGTGCTGTCGGGCTTCTTC
TTGTACCTAGCTTCTTGCGTTACCGTTGCGTTGTGGGCTCATGTCGGAGA
CGCCACTCTTTTCCTCATCGTTCCCCTTCCCTGCTGCCGCCTATTCTCAA
CTGTTTTTGCGCAAAGGTTGTCTTTCTAAGCGAAAAAAAAGTTGCCTGAT
TCCATCAGTGCGGACGGACTGCGTACTTCGGAGAAAAACATCCTTGTGAA
TTTCGTTGTTGGGAGCCGCTCCCTGGTCCGAAAAATGTCCATCAACACCG
CCACCCGCGCTCTGGGCGCTGTGCATTTTGGTGAAGTGCATCGTCTCATC
CTCCAGCAGATCGGGGCCGCGTGCAGATGGAGCAGCAGCAGATCGACTGT
GGAGGCGGGCGGATTCTGGGAGTCGGTCAAGAGAGACGCGGAGAAATCCG
AGAGCTACAAGCGTGCGAAGGCTGGAGATGGGCCAGGCTACCGCAATTTC
AATCCGCAGGCGGCAGCGTCGTCATCACCATCATCAGAAGCTGGGCCTGC
CGCAGGCGCGGGAGACGACAGCTGGGCCAATAGCTTGGTCTTTGACATGA
CAGAGCCCATGCATCTGTCGCCTCGAAAAGCGGCCACTGTCTCGGTGTTT
CAGGTGTGACCGACCAAGGGAAAAGGGGGAACAGGAGAGGCGCCGCGGGC
CGTGATGCCCTGTGCCGGGCTTGCGAGCGGGCCGGTTCTCTGTGGATGTT
TGGTCTGCCGTTTCACAGCTGTTGAGCCCTCTGCTGCTCCCCGCTGCTGT
TTCTCGTCAGCGATAGTGCATCTGTCGCCGCCACATTACTCCATTCGCTG
CTTTTGCAAGTTTACGGTCACCGACACAGCCGTTTTTTGCCCCAGTCGCC
ATTGGCCGCACCAAATGCACGCGTCTTTGCAACCTTTGTTCGTGACCCCC
TTAGTTCGTGTGCCCAAAGCCCAAAGCAACCATTTGATAATGTTCGACTG
TTTTCTAATACGTACTTTAGGACACGGTGCTGATCGATTTGAGGTGTTAC
GTCAAGAACCAGTACAACGGCGGGCCACAGCACACGAAAAAGGGTATAAG
CCTGACCGTGGATCAATGGGACCGGCTCAAAGCCGCCGCCCCCGAGATCG
ATCGCCAGGTGGAGCAGATGCGGTGGAGTCTCGTCAAAAACTTGGCGCCT
CCCGCCGACGACGATGATGGCGATGGCGCTGATGGCGACGGGGACGACGG
CAGCAGTGATGGCGGCAGCAGGGATGGCGACAGCAGGGATGGCGATAGCA
GCGGCGGCAGAGGCAGCAGCGGCAGCGACGGCGGCGGCGAAAGCTTGAGG
AGAGGTGGCGAGCACAACATCGGCGTGGTGCGGCCGTGAACTGCGTGCAT
CAGCACAGGAAACAAGAGGTGTGCCAACGTCTCTTTGTATTAAGAAAGTT
GGATTCAATGGACGCTGTTCTCTGAGATGAGGAAAGTCTTTCACTTTCTG
CGTGCTTTCCAGGCGGGATATGTGCAATAGCTGTAGAAACGAGCTGCTTT
CGTGCTGGGATTTTATGGCGCATCGTCTTTCGGGTTCATTGTTGTTAAGG
TTCGAAAAATTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6:2179..3891+

>mRNA_P-wetherbeei_contig6.1.1 ID=mRNA_P-wetherbeei_contig6.1.1|Name=mRNA_P-wetherbeei_contig6.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=738bp|location=Sequence derived from alignment at P-wetherbeei_contig6:2179..3891+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCATCAACACCGCCACCCGCGCTCTGGGCGCTGTGCATTTTGGTGA
AGTGCATCGTCTCATCCTCCAGCAGATCGGGGCCGCGTGCAGATGGAGCA
GCAGCAGATCGACTGTGGAGGCGGGCGGATTCTGGGAGTCGGTCAAGAGA
GACGCGGAGAAATCCGAGAGCTACAAGCGTGCGAAGGCTGGAGATGGGCC
AGGCTACCGCAATTTCAATCCGCAGGCGGCAGCGTCGTCATCACCATCAT
CAGAAGCTGGGCCTGCCGCAGGCGCGGGAGACGACAGCTGGGCCAATAGC
TTGGTCTTTGACATGACAGAGCCCATGCATCTGTCGCCTCGAAAAGCGGC
CACTGTCTCGGTGTTTCAGGACACGGTGCTGATCGATTTGAGGTGTTACG
TCAAGAACCAGTACAACGGCGGGCCACAGCACACGAAAAAGGGTATAAGC
CTGACCGTGGATCAATGGGACCGGCTCAAAGCCGCCGCCCCCGAGATCGA
TCGCCAGGTGGAGCAGATGCGGTGGAGTCTCGTCAAAAACTTGGCGCCTC
CCGCCGACGACGATGATGGCGATGGCGCTGATGGCGACGGGGACGACGGC
AGCAGTGATGGCGGCAGCAGGGATGGCGACAGCAGGGATGGCGATAGCAG
CGGCGGCAGAGGCAGCAGCGGCAGCGACGGCGGCGGCGAAAGCTTGAGGA
GAGGTGGCGAGCACAACATCGGCGTGGTGCGGCCGTGA
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