mRNA_P-wetherbeei_contig5993.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5993.3.1
Unique NamemRNA_P-wetherbeei_contig5993.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5993.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5993contigP-wetherbeei_contig5993:2969..3460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size493
Hectar predicted targeting categoryother localisation
Exons1
Cds size447
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186880.5020342-UTR-P-wetherbeei_contig5993:2968..30131683186880.5020342-UTR-P-wetherbeei_contig5993:2968..3013Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5993 2969..3013 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186880.5122812-CDS-P-wetherbeei_contig5993:3013..34601683186880.5122812-CDS-P-wetherbeei_contig5993:3013..3460Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5993 3014..3460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5993.3.1prot_P-wetherbeei_contig5993.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5993 3014..3460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5993.3.1

>prot_P-wetherbeei_contig5993.3.1 ID=prot_P-wetherbeei_contig5993.3.1|Name=mRNA_P-wetherbeei_contig5993.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
MNSSRERSAFEQIQVRQSLSYMLLTVQATQVHASAILPSQHVPVTSQHPY
TCLWNLFRKLPAPRNTKTGIRKLQRPTTLSLCWGSSGNGQSSGNEHPLLA
ARVGRVVAAALCRHSGQPGVQERRFYSLWKPRDATKMTGPASANSRSRR
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mRNA from alignment at P-wetherbeei_contig5993:2969..3460+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5993.3.1 ID=mRNA_P-wetherbeei_contig5993.3.1|Name=mRNA_P-wetherbeei_contig5993.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig5993:2969..3460+ (Phaeothamnion wetherbeei SAG_119_79)
GCGTAGGAGGAGGAGTAGCATTTGGCGGCGGCGGAAGAAGGAGGGATGAA
CTCGTCGCGGGAGCGGTCAGCGTTTGAGCAGATTCAGGTGCGTCAGAGCC
TTTCCTACATGCTGCTGACCGTACAAGCAACACAGGTACACGCGTCTGCT
ATTCTGCCCTCGCAGCACGTGCCTGTCACATCGCAGCATCCCTACACTTG
TCTATGGAACCTCTTCCGTAAATTACCTGCCCCACGCAACACTAAGACTG
GAATCAGGAAGCTACAACGGCCAACGACCCTATCTCTGTGCTGGGGCTCC
TCCGGCAATGGCCAGAGCAGTGGAAACGAACACCCTCTCCTTGCCGCCCG
CGTCGGCAGGGTAGTTGCGGCGGCGCTGTGTCGCCATTCGGGTCAACCAG
GCGTGCAAGAGAGACGCTTCTATTCTCTTTGGAAACCCCGCGACGCGACG
AAGATGACCGGGCCGGCGTCGGCGAACTCGCGGTCCAGGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5993:2969..3460+

>mRNA_P-wetherbeei_contig5993.3.1 ID=mRNA_P-wetherbeei_contig5993.3.1|Name=mRNA_P-wetherbeei_contig5993.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig5993:2969..3460+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACTCGTCGCGGGAGCGGTCAGCGTTTGAGCAGATTCAGGTGCGTCA
GAGCCTTTCCTACATGCTGCTGACCGTACAAGCAACACAGGTACACGCGT
CTGCTATTCTGCCCTCGCAGCACGTGCCTGTCACATCGCAGCATCCCTAC
ACTTGTCTATGGAACCTCTTCCGTAAATTACCTGCCCCACGCAACACTAA
GACTGGAATCAGGAAGCTACAACGGCCAACGACCCTATCTCTGTGCTGGG
GCTCCTCCGGCAATGGCCAGAGCAGTGGAAACGAACACCCTCTCCTTGCC
GCCCGCGTCGGCAGGGTAGTTGCGGCGGCGCTGTGTCGCCATTCGGGTCA
ACCAGGCGTGCAAGAGAGACGCTTCTATTCTCTTTGGAAACCCCGCGACG
CGACGAAGATGACCGGGCCGGCGTCGGCGAACTCGCGGTCCAGGCGC
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