mRNA_P-wetherbeei_contig5974.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5974.1.1
Unique NamemRNA_P-wetherbeei_contig5974.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5974.1.1 vs. uniprot
Match: D8LG56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG56_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 8.200e-34
Identity = 71/176 (40.34%), Postives = 108/176 (61.36%), Query Frame = 3 
Query:  213 RKRPWHVVRQEHKAYFAMVSCLSAPQAPGSGXXXXTESDDQSVAERRRELIARLGIALNIPKYITNAVEPAMAAPRALDRRKGLASIATQLKGQLPDPDVSAPWP-GGMELSVGADVDVLDADV-WRPATVRRMRGSEVLIHYHGWSSKWDIWVDSAVGGVAPAETHTTAGEWAKR 734
            RKRPW++VRQEHKAYFA+++ L  P A         +     + + RR+++ RL   L+IP  +++AV  A+ + + L  ++ L ++  ++K +LP+    AP   G +EL VGADVDV D    W P  +  ++GS + IHYHGW++KWD WVD + G VAP ET+T+   W +R
Sbjct:   40 RKRPWNLVRQEHKAYFAVLAVLFQPTA--------CQEASPEMLDARRDILKRLKKELHIPDSVSDAVHGALKSDKPLQWQRSLVALQGKVKAKLPE---HAPLMLGNLELCVGADVDVKDFQKNWLPGKINGLQGSSLCIHYHGWANKWDEWVDVSHGRVAPRETYTSKAAWGRR 204
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BLAST of mRNA_P-wetherbeei_contig5974.1.1 vs. uniprot
Match: A0A024TS32_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TS32_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 6.270e-6
Identity = 41/134 (30.60%), Postives = 63/134 (47.01%), Query Frame = 3 
Query:  360 LIARLGIALNIPKYITNAVEPAMAAPRALDR-RKGLASIATQLKGQLPDPDVSA--PWPGGMELSVGADVDVLDA-DVWRPATVRRMRGSEVLIHYHGWSSKWDIWVDSAVGGVAPAETHTTAGEWAKRGRPPV 749
            L +R G + + P     +    +A P +++  R+GL +I + L   LP   V+A  P P   +  VG  +DV D  + W   T+  +   +V +HYHGW S+WD W+D     +A   T T  G    R   P 
Sbjct:  193 LRSRYGPSDSTPSNEPESEASTIAPPPSVEHIRQGLLTIQSMLS--LPATPVAAGEPSPPSRQFFVGQWLDVKDTVNQWLEGTILEVNEDQVFVHYHGWPSRWDEWIDRKSPRLAAFRTRTLHGAGTSRHLSPA 324
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BLAST of mRNA_P-wetherbeei_contig5974.1.1 vs. uniprot
Match: A0A418AS54_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AS54_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.530e-5
Identity = 40/134 (29.85%), Postives = 62/134 (46.27%), Query Frame = 3 
Query:  360 LIARLGIALNIPKYITNAVEPAMAAPRALDR-RKGLASIATQLKGQLPDPDVSA--PWPGGMELSVGADVDVLDA-DVWRPATVRRMRGSEVLIHYHGWSSKWDIWVDSAVGGVAPAETHTTAGEWAKRGRPPV 749
            L +R G + + P     +    +  P +++  R+GL +I + L   LP   V+A  P P   +  VG  +DV D  + W   T+  +   +V +HYHGW S+WD W+D     +A   T T  G    R   P 
Sbjct:  168 LRSRYGPSDSTPSNEPESEASTIVPPPSVEHIRQGLLTIQSMLS--LPATPVAAGEPSPPSRQFFVGQWLDVKDTVNQWLEGTILEVNEDQVFVHYHGWPSRWDEWIDRKSPRLAAFRTRTLHGAGTSRHLSPA 299
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BLAST of mRNA_P-wetherbeei_contig5974.1.1 vs. uniprot
Match: A0A7S0XMH9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0XMH9_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 6.070e-5
Identity = 30/77 (38.96%), Postives = 40/77 (51.95%), Query Frame = 3 
Query:  546 VGADVDVLDA-DVWRPATVRRMRGSEVLIHYHGWSSKWDIWVDSAVGGVAPAETHTTAGEWAKRGRP----PVAKGP 761
            VG  VDV D    W  ATV R+R  ++L+HY+GW ++WD W+D     VAP  T T   + +    P    PV   P
Sbjct:   86 VGQWVDVEDTVHQWLEATVMRVRARQMLVHYNGWPTRWDEWLDFDSRRVAPFRTRTLHSQHSPHASPSPLTPVEDAP 162
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5974.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LG56_ECTSI8.200e-3440.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A024TS32_9STRA6.270e-630.60Ubiquitin-like domain-containing protein n=1 Tax=A... [more]
A0A418AS54_9STRA1.530e-529.85Ubiquitin-like domain-containing protein n=1 Tax=A... [more]
A0A7S0XMH9_9STRA6.070e-538.96Hypothetical protein (Fragment) n=1 Tax=Chrysocyst... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5974contigP-wetherbeei_contig5974:818..2700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LG56
Model size1264
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.08e-36
EggNOG OGs2E4UF@1|root,2SBPI@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_001870.1
Cds size579
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186879.0228453-UTR-P-wetherbeei_contig5974:817..13171683186879.0228453-UTR-P-wetherbeei_contig5974:817..1317Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5974 818..1317 -
1683186879.0640821-UTR-P-wetherbeei_contig5974:2515..27001683186879.0640821-UTR-P-wetherbeei_contig5974:2515..2700Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5974 2516..2700 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186879.0340626-CDS-P-wetherbeei_contig5974:1317..14611683186879.0340626-CDS-P-wetherbeei_contig5974:1317..1461Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5974 1318..1461 -
1683186879.043877-CDS-P-wetherbeei_contig5974:1818..19561683186879.043877-CDS-P-wetherbeei_contig5974:1818..1956Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5974 1819..1956 -
1683186879.0555098-CDS-P-wetherbeei_contig5974:2218..25151683186879.0555098-CDS-P-wetherbeei_contig5974:2218..2515Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5974 2219..2515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5974.1.1prot_P-wetherbeei_contig5974.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5974 1318..2515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5974.1.1

>prot_P-wetherbeei_contig5974.1.1 ID=prot_P-wetherbeei_contig5974.1.1|Name=mRNA_P-wetherbeei_contig5974.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=193bp
MAEESTRLLRKRPWHVVRQEHKAYFAMVSCLSAPQAPGSGGGGGTESDDQ
SVAERRRELIARLGIALNIPKYITNAVEPAMAAPRALDRRKGLASIATQL
KGQLPDPDVSAPWPGGMELSVGADVDVLDADVWRPATVRRMRGSEVLIHY
HGWSSKWDIWVDSAVGGVAPAETHTTAGEWAKRGRPPVAKGP*
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mRNA from alignment at P-wetherbeei_contig5974:818..2700-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5974.1.1 ID=mRNA_P-wetherbeei_contig5974.1.1|Name=mRNA_P-wetherbeei_contig5974.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1883bp|location=Sequence derived from alignment at P-wetherbeei_contig5974:818..2700- (Phaeothamnion wetherbeei SAG_119_79)
TTTCCTTAGCTCCAGGGTTCAGGGTTTCCTCTCCTGTTCTGCACGCCTTT
CTCCGCCGCGGCGAATGCCTCTTCTCGGAGAGGAGCGGGTCGTCAATACG
CGGTCGTGAGCTCAAACTCCAAAATCCAAACTGGAAAGAAAAGCAGCACG
CCAGTGCACAAAAACCTTCCTTCCTTTGAGAAGCGATGGCTGAGGAGTCG
ACGAGATTGTTGCGGAAACGCCCGTGGCACGTCGTGAGGCAGGAGCACAA
GGCGTATTTTGCGATGGTCTCTTGCCTGTCGGCGCCTCAAGCGCCTGGAA
GCGGCGGCGGCGGCGGCACGGAAAGCGACGACCAATCCGTGGCGGAACGA
CGGCGCGAACTCATTGCGCGCCTCGGAATAGCCCTCAACATTCCGAAATA
CATAACAAATGCGGTGGAGCCAGCAATGGCGGCGCCCCGGGCTCTTGACC
GGAGAAAGGGCCTGGCCAGCATCGCGACGCAGGTATGTTCGATTGCATCA
ATGCATAAAACCCTTTCTGAGCGAGAATATTGCGTGTCAACTTTTGGTCG
AGGAGAAGGGGCATTTGTTCAGGTTGACACAGGCGTCCCCCCTACTGTGC
TATTAGAAGGAGAGCGAGAGCGCCGCCTACAGGAACCGTTTCCTTACGCG
CATTCGCAGCTTGCGATTTCTGATCTCCTCATTCACCTTGTTTGTTCTGA
GAAAGTCTCCTCGCTTTGATATCTCGGTTCTTTCCCCTCCTTAGCTCAAG
GGGCAGCTGCCGGACCCGGATGTTTCGGCCCCGTGGCCGGGCGGGATGGA
GCTCTCCGTCGGCGCCGACGTCGATGTTTTGGACGCCGACGTCTGGCGCC
CGGCCACGGTCCGGAGAATGCGCGGAAGCGAGGTGAGTTTAGGAAACGCC
GCCGTTTGCGACCTAAAACTTCTGAAAGGTTCCCATGGGATTTCGTGCTT
CACAAGCAGCTTTTTGCCCTTGTCATACTTTTCTTTTCTTGTCTTTGGTC
GTTGTCGCCTCATCTCGTTTTGATCCGTGGTAGGCAATTCTCGTTTTGTG
CACCGCTGCCGGCCTCCGTCCATTTGGTACCACGGTGCTCCAGACGCTCT
TACGGCCGCATTCCTGTTCTGCCTAGGCCGAATCCGAAACAGTCGCCGTG
CACCACAGCGATTCCGCCAGTTCCTTTACTCTCCAAACGCCGGGCCCTCT
CCTGAACCCGCCTACCAAAATTTTCTCCCTTTCAAGCAGGTGTTGATCCA
CTACCACGGGTGGAGCAGCAAGTGGGACATCTGGGTGGACTCGGCAGTCG
GCGGCGTGGCGCCCGCCGAGACGCACACCACTGCCGGCGAGTGGGCCAAG
CGTGGCCGGCCCCCCGTCGCCAAGGGCCCCTGACCGAGTCGCTGAAGTAT
TTTGAAGACATTTGAGCACTGGACCATTGGGGCATTGGGGCAAGCTGAAG
AAGCGTTTTTCCAGTGAGGGTTTGTCTCGGCTTGGCCTTGTTTTGGCCTA
CGAGGCGCGCTTCGGCGGACCGTTGTTCTTCCGGCGAGCGCTGAGCATGG
CGACGCCGACAGCGGGAGGCTGCCGGCGGGGGCGGGCAGGGGTGTCGCGG
CAGCGGCCATTGGCAGCGGCGGCGGCGGCACCTAATAGCGGCGGCGACGG
CCCGATACGGCTGGCTGCAACCACTTTCATAGATGGTGAGCACCGGCGAG
AACAGAAACGCTGCCAACGCCGGGACAACGCCAGCAAATATATTGAGGGG
ATTGCCGACGGAGATGAGGCAGGCGGCACGAAGCATAGGGCTTCTAATTG
GACTGTGAGCCATTAAGTTGACTTTGGCAACACGCCCGGCTGTCCGGTTG
AGCACCTGTAAATGTTTCAATCAGTTTTCTCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5974:818..2700-

>mRNA_P-wetherbeei_contig5974.1.1 ID=mRNA_P-wetherbeei_contig5974.1.1|Name=mRNA_P-wetherbeei_contig5974.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=579bp|location=Sequence derived from alignment at P-wetherbeei_contig5974:818..2700- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGAGGAGTCGACGAGATTGTTGCGGAAACGCCCGTGGCACGTCGT
GAGGCAGGAGCACAAGGCGTATTTTGCGATGGTCTCTTGCCTGTCGGCGC
CTCAAGCGCCTGGAAGCGGCGGCGGCGGCGGCACGGAAAGCGACGACCAA
TCCGTGGCGGAACGACGGCGCGAACTCATTGCGCGCCTCGGAATAGCCCT
CAACATTCCGAAATACATAACAAATGCGGTGGAGCCAGCAATGGCGGCGC
CCCGGGCTCTTGACCGGAGAAAGGGCCTGGCCAGCATCGCGACGCAGCTC
AAGGGGCAGCTGCCGGACCCGGATGTTTCGGCCCCGTGGCCGGGCGGGAT
GGAGCTCTCCGTCGGCGCCGACGTCGATGTTTTGGACGCCGACGTCTGGC
GCCCGGCCACGGTCCGGAGAATGCGCGGAAGCGAGGTGTTGATCCACTAC
CACGGGTGGAGCAGCAAGTGGGACATCTGGGTGGACTCGGCAGTCGGCGG
CGTGGCGCCCGCCGAGACGCACACCACTGCCGGCGAGTGGGCCAAGCGTG
GCCGGCCCCCCGTCGCCAAGGGCCCCTGA
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