mRNA_P-wetherbeei_contig5955.4.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5955.4.2
Unique NamemRNA_P-wetherbeei_contig5955.4.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5955.4.2 vs. uniprot
Match: A0A5D6XQ34_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQ34_9STRA)

HSP 1 Score: 102 bits (254), Expect = 6.490e-25
Identity = 61/160 (38.12%), Postives = 82/160 (51.25%), Query Frame = 1
Query:   25 LKFALVGACWGCTNPLLKRGCNVDST--AATDPKHGGLRWLLDPLKSFRRPTVLIPYAVNQAGSALYWYLIASEGTFPQRLLCSRQSLYKRDAIESRPLWLSLCTDLSMAVPICNSLTFVFTALTGAALGEAFRRPLVAWGGIALVLCGTAFCISAQKEH 498
            L F  VGA WGCTNPL+KRG   D T   A +     LR LL  +K++R    ++P+ +NQ+GSA Y YL+ S                                ++S AVPICNSLTFVFTA+T   LGEA +RP+  + G+ L+L G   C  ++   
Sbjct:    6 LSFLFVGALWGCTNPLIKRGSAADLTYSRANNSPAEFLRQLLHWIKNWR---FVVPFVLNQSGSAAYVYLLGS-------------------------------AEISSAVPICNSLTFVFTAITSRLLGEAPKRPIWTYTGMVLILLGVLICFDSKNNQ 131          
BLAST of mRNA_P-wetherbeei_contig5955.4.2 vs. uniprot
Match: A0A484E0X9_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E0X9_BRELC)

HSP 1 Score: 102 bits (254), Expect = 1.160e-24
Identity = 59/155 (38.06%), Postives = 85/155 (54.84%), Query Frame = 1
Query:   25 LKFALVGACWGCTNPLLKRGCNVDSTAATDPKHGGLRWLLDPLKSFRRPTVLIPYAVNQAGSALYWYLIASEGTFPQRLLCSRQSLYKRDAIESRPLWLSLCTDLSMAVPICNSLTFVFTALTGAALGEAFRRPLVAWGGIALVLCGTAFCISAQ 489
            L F  VGA WGCTNP +KRG N +    T   +    ++   +   R    ++P+A+NQ+GS  Y YL+ S GTFP  L     +  + +       +  +  D+S AVPICNSLTFVFTA+T   LGE  +R +  + G+ L+L G A C  ++
Sbjct:    6 LSFLFVGALWGCTNPFIKRGSN-NKCIYTRKDNSIGEYVKLVVGLVRNWQFMLPFALNQSGSIFYVYLLGSAGTFPLTLNGEGNTGLRLN-------FFLVAIDISNAVPICNSLTFVFTAITSRLLGEKPQRSVSTYTGVVLILLGVAICYDSK 152          
BLAST of mRNA_P-wetherbeei_contig5955.4.2 vs. uniprot
Match: G4Z987_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4Z987_PHYSP)

HSP 1 Score: 100 bits (249), Expect = 3.990e-24
Identity = 60/167 (35.93%), Postives = 86/167 (51.50%), Query Frame = 1
Query:    1 LSPNMALPLKFALVGACWGCTNPLLKRGCNVDS--TAATDPKHGGLRWLLDPLKSFRRPTVLIPYAVNQAGSALYWYLIASEGTFPQRLLCSRQSLYKRDAIESRPLWLSLCTDLSMAVPICNSLTFVFTALTGAALGEAFRRPLVAWGGIALVLCGTAFCISAQKE 495
            +S  +   L F  VGA WGCTNPL+KRG + D   T   +      + LLD +K+++    L+P+A+NQ+GS  Y +L+ S                               TD+S AVPICNSL FVFTA+T   LGE  +RP+  + G+ L+L G A C  +++ 
Sbjct:    1 MSSALTTLLSFLFVGALWGCTNPLIKRGSDADVMYTRKDNSLEEMKKQLLDLMKNWQ---FLLPFALNQSGSVAYVFLLGS-------------------------------TDVSNAVPICNSLAFVFTAITSRLLGEQPQRPISTYTGMTLILTGVAICFDSKQN 133          
BLAST of mRNA_P-wetherbeei_contig5955.4.2 vs. uniprot
Match: A0A225WLS3_9STRA (Putative membrane protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WLS3_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.640e-23
Identity = 58/165 (35.15%), Postives = 84/165 (50.91%), Query Frame = 1
Query:    1 LSPNMALPLKFALVGACWGCTNPLLKRGCNVDSTAATDPKHGGLRWLLDPLKSFRRPTVLIPYAVNQAGSALYWYLIASEGTFPQRLLCSRQSLYKRDAIESRPLWLSLCTDLSMAVPICNSLTFVFTALTGAALGEAFRRPLVAWGGIALVLCGTAFCISAQKE 495
            +S  ++  L F  VGA WGCTNPL+KRG N DS   T   +    +    +   +    ++P+A+NQ+GS +Y YL+ S                                D+S AVPICNSLTFVFTA+T   LGE  +RP+  + G+ L+L G A C  ++++
Sbjct:    1 MSSTISTLLSFLFVGALWGCTNPLIKRGSN-DSVMYTRKSNSVGEFGKQLIGLVKNWQFVLPFALNQSGSVVYVYLLGS-------------------------------ADISNAVPICNSLTFVFTAITSRLLGEKPQRPVSTYTGMFLILLGVAICFDSKQQ 133          
BLAST of mRNA_P-wetherbeei_contig5955.4.2 vs. uniprot
Match: A0A3R7KFJ3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KFJ3_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 3.460e-23
Identity = 56/166 (33.73%), Postives = 84/166 (50.60%), Query Frame = 1
Query:    1 LSPNMALPLKFALVGACWGCTNPLLKRGCNVDSTAATDPKHGGLR-WLLDPLKSFRRPTVLIPYAVNQAGSALYWYLIASEGTFPQRLLCSRQSLYKRDAIESRPLWLSLCTDLSMAVPICNSLTFVFTALTGAALGEAFRRPLVAWGGIALVLCGTAFCISAQKE 495
            +S   +  L F  VGA WGCTNPL+KRG   D  A    K   ++ ++   +   +    ++P+ +NQ+GS +Y YL+ S                                D+S AVPICNSLTFVFTA+T   LGE  +RP+  + G+ L+L G A C +++++
Sbjct:    1 MSSTTSTLLSFLFVGALWGCTNPLIKRGKRSDDDAMYARKDNSVQEFVKQVVHLVKNWQFVLPFILNQSGSVVYVYLLGS-------------------------------ADISNAVPICNSLTFVFTAITSRLLGEKPQRPISTYTGMVLILLGVAICFNSKQD 135          
BLAST of mRNA_P-wetherbeei_contig5955.4.2 vs. uniprot
Match: D0MUD0_PHYIT (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0MUD0_PHYIT)

HSP 1 Score: 97.8 bits (242), Expect = 4.380e-23
Identity = 57/165 (34.55%), Postives = 82/165 (49.70%), Query Frame = 1
Query:    1 LSPNMALPLKFALVGACWGCTNPLLKRGCNVDSTAATDPKHGGLRWLLDPLKSFRRPTVLIPYAVNQAGSALYWYLIASEGTFPQRLLCSRQSLYKRDAIESRPLWLSLCTDLSMAVPICNSLTFVFTALTGAALGEAFRRPLVAWGGIALVLCGTAFCISAQKE 495
            +S  +   L F  VGA WGCTNPL+KRG N D    T   +    +    +   +    ++P+A+NQ+GS +Y YL+ S                                D+S AVPICNSLTFVFTA+T   LGE  +RP   + G+ L+L G A C +++++
Sbjct:    1 MSSTVPTLLSFLFVGALWGCTNPLIKRGSN-DDVMYTRKDNSIGEFTKQAVGIVKNWQFVLPFALNQSGSVVYVYLLGS-------------------------------ADISNAVPICNSLTFVFTAITSRLLGEKPQRPASTYTGMVLILLGVAICFNSKQD 133          
BLAST of mRNA_P-wetherbeei_contig5955.4.2 vs. uniprot
Match: A0A7S1UNM3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UNM3_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 4.100e-22
Identity = 56/158 (35.44%), Postives = 81/158 (51.27%), Query Frame = 1
Query:   10 NMALPLKFALVGACWGCTNPLLKRGCNVDSTAATDPKHGGLRWLLDPLKSFRRPTVLIPYAVNQAGSALYWYLIASEGTFPQRLLCSRQSLYKRDAIESRPLWLSLCTDLSMAVPICNSLTFVFTALTGAALGEAFRRPLVAWGGIALVLCGTAFCIS 483
             + + L   LVGA WGCTNPLL++G   ++T A + +H     LL  L  FR   V +PY +NQ+GS LY+ L+A+                               +DL++AVPICN+L+ VF+  T   LGE   +PL A  G A+V+ G   C++
Sbjct:    2 ELKIILSLILVGAFWGCTNPLLRKGSTAEATDAAEGEHSSSS-LLTTLSRFRNWKVWLPYLLNQSGSLLYYVLLAN-------------------------------SDLTLAVPICNALSLVFSMGTSHLLGERVDKPLRAGLGAAMVMMGVTLCVT 127          
BLAST of mRNA_P-wetherbeei_contig5955.4.2 vs. uniprot
Match: A0A448Z7G1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7G1_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 3.720e-21
Identity = 56/168 (33.33%), Postives = 86/168 (51.19%), Query Frame = 1
Query:   25 LKFALVGACWGCTNPLLKRGCN--VDSTAATDPK--------HGGLRWLLDPLKSFRRPTVLIPYAVNQAGSALYWYLIASEGTFPQRLLCSRQSLYKRDAIESRPLWLSLCTDLSMAVPICNSLTFVFTALTGAALGEAFRRPLVAWGGIALVLCGTAFCISAQKEH 498
            L   LVGA WGCTNPLL++G +   +S++A  P              +L+  L+SF    V +PY +NQ+GS +++ L+A+                               +D+SMAVPICN++  +F+ LT + LGE  ++PL    G  L++ G A C+S+Q EH
Sbjct:    9 LSMLLVGALWGCTNPLLRKGSSDAEESSSAKRPDASDDGSXXDSSSSFLVSSLRSFANVGVWLPYVLNQSGSIVFYVLLAN-------------------------------SDISMAVPICNAMALLFSFLTSSLLGEPIQKPLRTGAGAFLIMVGVAICVSSQ-EH 144          
BLAST of mRNA_P-wetherbeei_contig5955.4.2 vs. uniprot
Match: W2P4A6_PHYPR (BCNT-C domain-containing protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2P4A6_PHYPR)

HSP 1 Score: 96.7 bits (239), Expect = 9.750e-21
Identity = 57/164 (34.76%), Postives = 83/164 (50.61%), Query Frame = 1
Query:    1 LSPNMALPLKFALVGACWGCTNPLLKRGCNVDSTAATDPKHGGLRWLLDPLKSFRRPTVLIPYAVNQAGSALYWYLIASEGTFPQRLLCSRQSLYKRDAIESRPLWLSLCTDLSMAVPICNSLTFVFTALTGAALGEAFRRPLVAWGGIALVLCGTAFCISAQK 492
            +S  ++  L F  VGA WGCTNPL+KRG + D+   T   +    +    +   R    ++P+A+NQ+GS +Y YL+ S                                D+S AVPICNSLTFVFTA+T   LGE  +RP   + G+ L+L G A C ++++
Sbjct:    1 MSSTVSTLLSFLFVGALWGCTNPLIKRGSD-DNVIYTRKDNSVGEFAKQLVGLVRNWQFVLPFALNQSGSVVYVYLLGS-------------------------------ADISNAVPICNSLTFVFTAITSRLLGEKPQRPASTYTGMVLILLGVAICFNSKQ 132          
BLAST of mRNA_P-wetherbeei_contig5955.4.2 vs. uniprot
Match: K3WLG6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLG6_GLOUD)

HSP 1 Score: 90.9 bits (224), Expect = 2.150e-20
Identity = 53/156 (33.97%), Postives = 77/156 (49.36%), Query Frame = 1
Query:   25 LKFALVGACWGCTNPLLKRGCNVDSTAATDPKHGGLRWLLDPLKSFRRPTVLIPYAVNQAGSALYWYLIASEGTFPQRLLCSRQSLYKRDAIESRPLWLSLCTDLSMAVPICNSLTFVFTALTGAALGEAFRRPLVAWGGIALVLCGTAFCISAQK 492
            L F  VGA WGCTNPL+KRG   D T  T   +    ++   +   +    ++P+A+NQ+GS  Y +L+ S                                ++S AVPICNSLTFVFTA+T   LGE  +RP+  + G+ L+L G   C +++ 
Sbjct:   10 LSFLFVGALWGCTNPLIKRGSAEDLTY-TRKDNSFAEFVCQLVHWVKNWRFVVPFALNQSGSIAYVHLLGS-------------------------------AEISNAVPICNSLTFVFTAITSRLLGEKPKRPVWTYSGMVLILLGVVICFNSKN 133          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5955.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6XQ34_9STRA6.490e-2538.13Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A484E0X9_BRELC1.160e-2438.06Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
G4Z987_PHYSP3.990e-2435.93Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A225WLS3_9STRA1.640e-2335.15Putative membrane protein n=1 Tax=Phytophthora meg... [more]
A0A3R7KFJ3_9STRA3.460e-2333.73Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
D0MUD0_PHYIT4.380e-2334.55Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A7S1UNM3_9STRA4.100e-2235.44Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A448Z7G1_9STRA3.720e-2133.33Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
W2P4A6_PHYPR9.750e-2134.76BCNT-C domain-containing protein n=1 Tax=Phytophth... [more]
K3WLG6_GLOUD2.150e-2033.97Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5955contigP-wetherbeei_contig5955:2414..3007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000013705
PFAMsTMEM234
Model size501
Max annot lvl121069|Pythiales
Hectar predicted targeting categorysignal peptide
Exons2
Evalue1.15e-24
EggNOG OGsKOG4831@1|root,KOG4831@2759|Eukaryota,1MHV3@121069|Pythiales
Ec32 ortholog descriptionUncharacterised protein family UPF0546
Ec32 orthologEc-09_004560.1
DescriptionSource PGD
Cds size489
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186878.1314852-UTR-P-wetherbeei_contig5955:2413..24251683186878.1314852-UTR-P-wetherbeei_contig5955:2413..2425Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5955 2414..2425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186878.142032-CDS-P-wetherbeei_contig5955:2425..25871683186878.142032-CDS-P-wetherbeei_contig5955:2425..2587Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5955 2426..2587 +
1683186878.1512086-CDS-P-wetherbeei_contig5955:2680..30071683186878.1512086-CDS-P-wetherbeei_contig5955:2680..3007Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5955 2681..3007 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5955.4.2prot_P-wetherbeei_contig5955.4.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5955 2426..3007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5955.4.2

>prot_P-wetherbeei_contig5955.4.2 ID=prot_P-wetherbeei_contig5955.4.2|Name=mRNA_P-wetherbeei_contig5955.4.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
MALPLKFALVGACWGCTNPLLKRGCNVDSTAATDPKHGGLRWLLDPLKSF
RRPTVLIPYAVNQAGSALYWYLIASEGTFPQRLLCSRQSLYKRDAIESRP
LWLSLCTDLSMAVPICNSLTFVFTALTGAALGEAFRRPLVAWGGIALVLC
GTAFCISAQKEH*
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mRNA from alignment at P-wetherbeei_contig5955:2414..3007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5955.4.2 ID=mRNA_P-wetherbeei_contig5955.4.2|Name=mRNA_P-wetherbeei_contig5955.4.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=594bp|location=Sequence derived from alignment at P-wetherbeei_contig5955:2414..3007+ (Phaeothamnion wetherbeei SAG_119_79)
CTCTCCCCAAACATGGCATTGCCGCTAAAGTTTGCGCTCGTAGGCGCCTG CTGGGGTTGTACAAATCCCTTGCTAAAGAGAGGATGCAATGTCGACTCGA CTGCAGCTACAGATCCAAAACACGGTGGTCTCCGCTGGCTCTTGGATCCC CTGAAGAGCTTTCGGCGTCCAACGGTATGAACCCTGCAAACTTGGTCCAC CTGAGATTGGAATCTTCGACCTGCCTCAAATATGACACCGTTCTTCTCTC TCTCCCCAAAACGATAGGTTCTCATCCCGTACGCGGTGAATCAGGCAGGC TCTGCGCTATACTGGTACTTGATTGCCTCAGAAGGTACGTTTCCACAACG TCTTCTTTGCTCTCGCCAGTCCCTTTACAAACGTGACGCTATCGAGTCCC GCCCACTTTGGCTTTCTCTTTGCACAGATCTCTCGATGGCAGTGCCAATC TGCAACTCGCTAACGTTCGTGTTCACGGCACTGACGGGGGCCGCCCTCGG CGAGGCTTTCCGGCGGCCCTTGGTGGCGTGGGGGGGCATCGCCTTGGTGC TGTGCGGCACTGCTTTCTGCATCTCGGCGCAGAAGGAGCATTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5955:2414..3007+

>mRNA_P-wetherbeei_contig5955.4.2 ID=mRNA_P-wetherbeei_contig5955.4.2|Name=mRNA_P-wetherbeei_contig5955.4.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig5955:2414..3007+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCATTGCCGCTAAAGTTTGCGCTCGTAGGCGCCTGCTGGGGTTGTAC
AAATCCCTTGCTAAAGAGAGGATGCAATGTCGACTCGACTGCAGCTACAG
ATCCAAAACACGGTGGTCTCCGCTGGCTCTTGGATCCCCTGAAGAGCTTT
CGGCGTCCAACGGTTCTCATCCCGTACGCGGTGAATCAGGCAGGCTCTGC
GCTATACTGGTACTTGATTGCCTCAGAAGGTACGTTTCCACAACGTCTTC
TTTGCTCTCGCCAGTCCCTTTACAAACGTGACGCTATCGAGTCCCGCCCA
CTTTGGCTTTCTCTTTGCACAGATCTCTCGATGGCAGTGCCAATCTGCAA
CTCGCTAACGTTCGTGTTCACGGCACTGACGGGGGCCGCCCTCGGCGAGG
CTTTCCGGCGGCCCTTGGTGGCGTGGGGGGGCATCGCCTTGGTGCTGTGC
GGCACTGCTTTCTGCATCTCGGCGCAGAAGGAGCATTAA
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