mRNA_P-wetherbeei_contig5946.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Match: D7FWB5_ECTSI (Amino acid transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB5_ECTSI) HSP 1 Score: 135 bits (341), Expect = 6.740e-35 Identity = 63/120 (52.50%), Postives = 89/120 (74.17%), Query Frame = 1
Query: 1 VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERDRVIVTTFRLVCALPPIICASAFRNLASIIGYAGSLAIVISMIVPPYLAMRSREMCQKRFGASDTPFDGPLSS--PLALRCV 354
V L P SVYPLNVMV++NNMMAAVY+D +D AE D VIVTTFR++CA+PP++CA +++ A+I+GYAG L ++I+ + P Y+ + S+ MC++RFGAS TPF G ++S P C+
Sbjct: 422 VVLFPAMDVTSVYPLNVMVVANNMMAAVYNDHVDNAENDSVIVTTFRILCAVPPLLCALLWKDFAAIVGYAGCLTVMIAFVFPAYVNLLSKRMCEERFGASKTPFTGAITSSTPALYACI 541
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Match: A0A7S3Y2P6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2P6_HETAK) HSP 1 Score: 105 bits (262), Expect = 2.210e-26 Identity = 56/128 (43.75%), Postives = 82/128 (64.06%), Query Frame = 1
Query: 1 VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERDRVIVTTFRLVCALPPIICASAF-RNLASIIGYAGSLAIVISMIVPPYLAMRSREMCQKRFGAS--DTPFDGPLSSPLALRCVMAAGTAL 375
V L P ++PLN + + N+MAA YHDR+DKAE D+ IV FRLV +L PI+ A NL +++ YAG+ A++I MI+PP+L ++S++ ++ G S DTPF GP+S P L+ +M G L
Sbjct: 11 VLLFPALDVVGIFPLNAIAAAQNLMAATYHDRMDKAESDKFIVRFFRLVTSLTPILLALFVGSNLDTVLCYAGTCAVLICMIIPPFLNLKSQKYVKEHLGFSNADTPFSGPMSKPAVLKSLMGVGALL 138
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Match: A0A6H5JRD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD8_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 5.660e-21 Identity = 54/120 (45.00%), Postives = 71/120 (59.17%), Query Frame = 1
Query: 1 VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERDRVIVTTFRLVCALPPIICASAFRNLASIIGYAGSLAIVISMIVPPYLAMRSREMCQKRFGASDTPFDGPLSS--PLALRCV 354
V L P SVYPLNVMV++NNMMAAVY+D +D AE D VIVTTFR + P I G L ++I+ + P Y+ + S+ MC++RFGAS TPF G ++S P C+
Sbjct: 304 VVLFPAMDVTSVYPLNVMVVANNMMAAVYNDHVDNAENDSVIVTTFRGEADVVPFID--------------GCLTVMIAFVFPAYVNLLSKRMCEERFGASKTPFTGAITSSTPALYACI 409
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Match: A0A836CJG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJG5_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 3.400e-20 Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1
Query: 1 VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERDRVIVTTFRLVCALPPIICASAFRNLASIIGYAG 216
V L P SVYPLNVMVL+NN+MAAVYHDR+DKAE+DRVIV FRL CA+PPI+ A A +L I+ YAG
Sbjct: 451 VVLFPALDVLSVYPLNVMVLANNLMAAVYHDRVDKAEQDRVIVAVFRLGCAVPPILAAVALNSLTQIVDYAG 522
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Match: A0A7S3UU28_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU28_HETAK) HSP 1 Score: 86.3 bits (212), Expect = 2.830e-18 Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 1
Query: 1 VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERDRVIVTTFRLVCALPPIICASAFR-NLASIIGYAGSLAIVISMIVPPYLAMRSREMCQKRFG--ASDTPFDGPLSSPLALRCVMAAGTAL 375
V L P A SV+ LN + ++ +MA +YHDR+DKAE+D+ ++ FRL CA+PP+IC+ NL + AGS+AI ISM++P YL + S++ G ++ T + S P L V AG L
Sbjct: 75 VLLFPAMDAISVFSLNAVNMAGKLMAGLYHDRMDKAEKDKFLLRFFRLTCAIPPLICSFFVGDNLDKVYACAGSVAIPISMVIPAYLNIISQQKVVSDLGFRSARTRYSDWRSRPAVLAAVAGAGAVL 202
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Match: A0A7S2UWS4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWS4_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 5.610e-16 Identity = 38/87 (43.68%), Postives = 60/87 (68.97%), Query Frame = 1
Query: 1 VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERDRVIVTTFRLVCALPPIICASAFRNLASIIGYAGSLAIVISMIVPPYLA 261
V + P S +PLN+ L+ N+MAAVYHDR+D+AERD+ + FR V A P++ AS L +I+ Y+G++ I+++M++PPYL+
Sbjct: 293 VLIFPVIDVMSAFPLNIHNLATNLMAAVYHDRVDRAERDKTVRKFFRGVSAAVPLVVASLITKLDTILDYSGTVGILLAMVIPPYLS 379
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Match: A0A7S2V546_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V546_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 6.450e-16 Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 1
Query: 1 VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERDRVIVTTFRLVCALPPIICASAFRNLASIIGYAGSLAIVISMIVPPYLAMRSREMCQKRFG 297
V + P S +PLN + LS N+MAA+YHDR+DKAERD I FR CA ++ A+ L I+ YAGS I+++M++PPYL+ S + ++ G
Sbjct: 364 VLIFPVFDTISAFPLNAINLSTNVMAAIYHDRVDKAERDPTICGFFRGTCASVALVAAAFCTKLDVILDYAGSFGILLAMVIPPYLSYVSEKGTREELG 462
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Match: A0A4D9DET5_9STRA (Aa_trans domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DET5_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 3.140e-8 Identity = 35/101 (34.65%), Postives = 52/101 (51.49%), Query Frame = 1
Query: 1 VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERD---RVIVTTFRLVCALPPIICASAFRNLASIIGYAGSLAIVISMIVPPYLAMRSREMCQKRF 294
V L P S +PLN + L NNM+ + D RV FRL+ A+PP++ A R+L I YAG++ I+I+++ P L +RSR + F
Sbjct: 347 VLLFPALDVASAFPLNAITLGNNMLDMGNDQKRPDGSPDHPSRVTTVAFRLLAAIPPLVAALFLRDLGRISEYAGTVGIIITLVFPAVLNLRSRTRMKDLF 447
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Match: A0A7S3S4L3_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3S4L3_9SPIT) HSP 1 Score: 60.1 bits (144), Expect = 5.810e-8 Identity = 31/94 (32.98%), Postives = 54/94 (57.45%), Query Frame = 1
Query: 1 VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERDRVIVTTFRLVCALPPIICASAFRNLASIIGYAGSLAIVISMIVPPYLAMRSREMC 282
+ L P +V+PLN + LSNN+++ + +R + R + RL C+LPPII A+A+ +L+ + + G +A+++ IV P L +S C
Sbjct: 345 IELFPAIDTFTVFPLNAIFLSNNLLSILLGERWHAMQVPRWMGFVSRLACSLPPIILAAAYPSLSGTLDFTGIVAVILPFIVTPMLHRQSLNKC 438
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Match: A0A7S0ASG1_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ASG1_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 1.770e-6 Identity = 33/107 (30.84%), Postives = 56/107 (52.34%), Query Frame = 1
Query: 1 VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERDRVIVTTFRLVCALPPIICASAFRNLASIIGYAGSLAIVISMIVPPYLAMRSREMCQKRFGASDTPFDG 321
V L P S YPLN +VL NN++ +++ R + E + T +R++ + PPI+ A R L I YAG LAI+ + P + + S+ + + + T ++G
Sbjct: 389 VVLFPAVNIISAYPLNAIVLGNNLVQKIHNQR--EIETHAHLRTIYRVIASSPPIVGALFVRELGVITSYAGVLAIITVLCFPAMMYISSKRAARSKGYNNATMYEG 493 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5946.2.1 >prot_P-wetherbeei_contig5946.2.1 ID=prot_P-wetherbeei_contig5946.2.1|Name=mRNA_P-wetherbeei_contig5946.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERDRVIVTTFRLVCback to top mRNA from alignment at P-wetherbeei_contig5946:2509..3442- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5946.2.1 ID=mRNA_P-wetherbeei_contig5946.2.1|Name=mRNA_P-wetherbeei_contig5946.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=934bp|location=Sequence derived from alignment at P-wetherbeei_contig5946:2509..3442- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5946:2509..3442- >mRNA_P-wetherbeei_contig5946.2.1 ID=mRNA_P-wetherbeei_contig5946.2.1|Name=mRNA_P-wetherbeei_contig5946.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig5946:2509..3442- (Phaeothamnion wetherbeei SAG_119_79)back to top |