mRNA_P-wetherbeei_contig5946.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5946.2.1
Unique NamemRNA_P-wetherbeei_contig5946.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Match: D7FWB5_ECTSI (Amino acid transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB5_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 6.740e-35
Identity = 63/120 (52.50%), Postives = 89/120 (74.17%), Query Frame = 1
Query:    1 VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERDRVIVTTFRLVCALPPIICASAFRNLASIIGYAGSLAIVISMIVPPYLAMRSREMCQKRFGASDTPFDGPLSS--PLALRCV 354
            V L P     SVYPLNVMV++NNMMAAVY+D +D AE D VIVTTFR++CA+PP++CA  +++ A+I+GYAG L ++I+ + P Y+ + S+ MC++RFGAS TPF G ++S  P    C+
Sbjct:  422 VVLFPAMDVTSVYPLNVMVVANNMMAAVYNDHVDNAENDSVIVTTFRILCAVPPLLCALLWKDFAAIVGYAGCLTVMIAFVFPAYVNLLSKRMCEERFGASKTPFTGAITSSTPALYACI 541          
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Match: A0A7S3Y2P6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2P6_HETAK)

HSP 1 Score: 105 bits (262), Expect = 2.210e-26
Identity = 56/128 (43.75%), Postives = 82/128 (64.06%), Query Frame = 1
Query:    1 VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERDRVIVTTFRLVCALPPIICASAF-RNLASIIGYAGSLAIVISMIVPPYLAMRSREMCQKRFGAS--DTPFDGPLSSPLALRCVMAAGTAL 375
            V L P      ++PLN +  + N+MAA YHDR+DKAE D+ IV  FRLV +L PI+ A     NL +++ YAG+ A++I MI+PP+L ++S++  ++  G S  DTPF GP+S P  L+ +M  G  L
Sbjct:   11 VLLFPALDVVGIFPLNAIAAAQNLMAATYHDRMDKAESDKFIVRFFRLVTSLTPILLALFVGSNLDTVLCYAGTCAVLICMIIPPFLNLKSQKYVKEHLGFSNADTPFSGPMSKPAVLKSLMGVGALL 138          
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Match: A0A6H5JRD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD8_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 5.660e-21
Identity = 54/120 (45.00%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    1 VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERDRVIVTTFRLVCALPPIICASAFRNLASIIGYAGSLAIVISMIVPPYLAMRSREMCQKRFGASDTPFDGPLSS--PLALRCV 354
            V L P     SVYPLNVMV++NNMMAAVY+D +D AE D VIVTTFR    + P I               G L ++I+ + P Y+ + S+ MC++RFGAS TPF G ++S  P    C+
Sbjct:  304 VVLFPAMDVTSVYPLNVMVVANNMMAAVYNDHVDNAENDSVIVTTFRGEADVVPFID--------------GCLTVMIAFVFPAYVNLLSKRMCEERFGASKTPFTGAITSSTPALYACI 409          
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Match: A0A836CJG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJG5_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.400e-20
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERDRVIVTTFRLVCALPPIICASAFRNLASIIGYAG 216
            V L P     SVYPLNVMVL+NN+MAAVYHDR+DKAE+DRVIV  FRL CA+PPI+ A A  +L  I+ YAG
Sbjct:  451 VVLFPALDVLSVYPLNVMVLANNLMAAVYHDRVDKAEQDRVIVAVFRLGCAVPPILAAVALNSLTQIVDYAG 522          
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Match: A0A7S3UU28_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU28_HETAK)

HSP 1 Score: 86.3 bits (212), Expect = 2.830e-18
Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 1
Query:    1 VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERDRVIVTTFRLVCALPPIICASAFR-NLASIIGYAGSLAIVISMIVPPYLAMRSREMCQKRFG--ASDTPFDGPLSSPLALRCVMAAGTAL 375
            V L P   A SV+ LN + ++  +MA +YHDR+DKAE+D+ ++  FRL CA+PP+IC+     NL  +   AGS+AI ISM++P YL + S++      G  ++ T +    S P  L  V  AG  L
Sbjct:   75 VLLFPAMDAISVFSLNAVNMAGKLMAGLYHDRMDKAEKDKFLLRFFRLTCAIPPLICSFFVGDNLDKVYACAGSVAIPISMVIPAYLNIISQQKVVSDLGFRSARTRYSDWRSRPAVLAAVAGAGAVL 202          
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Match: A0A7S2UWS4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWS4_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 5.610e-16
Identity = 38/87 (43.68%), Postives = 60/87 (68.97%), Query Frame = 1
Query:    1 VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERDRVIVTTFRLVCALPPIICASAFRNLASIIGYAGSLAIVISMIVPPYLA 261
            V + P     S +PLN+  L+ N+MAAVYHDR+D+AERD+ +   FR V A  P++ AS    L +I+ Y+G++ I+++M++PPYL+
Sbjct:  293 VLIFPVIDVMSAFPLNIHNLATNLMAAVYHDRVDRAERDKTVRKFFRGVSAAVPLVVASLITKLDTILDYSGTVGILLAMVIPPYLS 379          
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Match: A0A7S2V546_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V546_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 6.450e-16
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 1
Query:    1 VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERDRVIVTTFRLVCALPPIICASAFRNLASIIGYAGSLAIVISMIVPPYLAMRSREMCQKRFG 297
            V + P     S +PLN + LS N+MAA+YHDR+DKAERD  I   FR  CA   ++ A+    L  I+ YAGS  I+++M++PPYL+  S +  ++  G
Sbjct:  364 VLIFPVFDTISAFPLNAINLSTNVMAAIYHDRVDKAERDPTICGFFRGTCASVALVAAAFCTKLDVILDYAGSFGILLAMVIPPYLSYVSEKGTREELG 462          
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Match: A0A4D9DET5_9STRA (Aa_trans domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DET5_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.140e-8
Identity = 35/101 (34.65%), Postives = 52/101 (51.49%), Query Frame = 1
Query:    1 VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERD---RVIVTTFRLVCALPPIICASAFRNLASIIGYAGSLAIVISMIVPPYLAMRSREMCQKRF 294
            V L P     S +PLN + L NNM+      +      D   RV    FRL+ A+PP++ A   R+L  I  YAG++ I+I+++ P  L +RSR   +  F
Sbjct:  347 VLLFPALDVASAFPLNAITLGNNMLDMGNDQKRPDGSPDHPSRVTTVAFRLLAAIPPLVAALFLRDLGRISEYAGTVGIIITLVFPAVLNLRSRTRMKDLF 447          
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Match: A0A7S3S4L3_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3S4L3_9SPIT)

HSP 1 Score: 60.1 bits (144), Expect = 5.810e-8
Identity = 31/94 (32.98%), Postives = 54/94 (57.45%), Query Frame = 1
Query:    1 VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERDRVIVTTFRLVCALPPIICASAFRNLASIIGYAGSLAIVISMIVPPYLAMRSREMC 282
            + L P     +V+PLN + LSNN+++ +  +R    +  R +    RL C+LPPII A+A+ +L+  + + G +A+++  IV P L  +S   C
Sbjct:  345 IELFPAIDTFTVFPLNAIFLSNNLLSILLGERWHAMQVPRWMGFVSRLACSLPPIILAAAYPSLSGTLDFTGIVAVILPFIVTPMLHRQSLNKC 438          
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Match: A0A7S0ASG1_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ASG1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.770e-6
Identity = 33/107 (30.84%), Postives = 56/107 (52.34%), Query Frame = 1
Query:    1 VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERDRVIVTTFRLVCALPPIICASAFRNLASIIGYAGSLAIVISMIVPPYLAMRSREMCQKRFGASDTPFDG 321
            V L P     S YPLN +VL NN++  +++ R  + E    + T +R++ + PPI+ A   R L  I  YAG LAI+  +  P  + + S+   + +   + T ++G
Sbjct:  389 VVLFPAVNIISAYPLNAIVLGNNLVQKIHNQR--EIETHAHLRTIYRVIASSPPIVGALFVRELGVITSYAGVLAIITVLCFPAMMYISSKRAARSKGYNNATMYEG 493          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5946.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FWB5_ECTSI6.740e-3552.50Amino acid transporter n=1 Tax=Ectocarpus siliculo... [more]
A0A7S3Y2P6_HETAK2.210e-2643.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6H5JRD8_9PHAE5.660e-2145.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJG5_9STRA3.400e-2065.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3UU28_HETAK2.830e-1839.84Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UWS4_9STRA5.610e-1643.68Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2V546_9STRA6.450e-1642.42Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9DET5_9STRA3.140e-834.65Aa_trans domain-containing protein n=1 Tax=Nannoch... [more]
A0A7S3S4L3_9SPIT5.810e-832.98Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S0ASG1_9STRA1.770e-630.84Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5946contigP-wetherbeei_contig5946:2509..3442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FWB5
PFAMsAa_trans
Model size390
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.1e-35
EggNOG OGsKOG3832@1|root,2SA9U@2759|Eukaryota
Ec32 ortholog descriptionAmino acid transporter, transmembrane
Ec32 orthologEc-25_003760.1
DescriptionTransmembrane amino acid transporter protein
Cds size390
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186877.5298953-CDS-P-wetherbeei_contig5946:2508..26841683186877.5298953-CDS-P-wetherbeei_contig5946:2508..2684Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5946 2509..2684 -
1683186877.5419796-CDS-P-wetherbeei_contig5946:3051..31571683186877.5419796-CDS-P-wetherbeei_contig5946:3051..3157Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5946 3052..3157 -
1683186877.5522938-CDS-P-wetherbeei_contig5946:3334..34421683186877.5522938-CDS-P-wetherbeei_contig5946:3334..3442Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5946 3335..3442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5946.2.1prot_P-wetherbeei_contig5946.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5946 2509..3442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5946.2.1

>prot_P-wetherbeei_contig5946.2.1 ID=prot_P-wetherbeei_contig5946.2.1|Name=mRNA_P-wetherbeei_contig5946.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
VTLLPFRRAGSVYPLNVMVLSNNMMAAVYHDRIDKAERDRVIVTTFRLVC
ALPPIICASAFRNLASIIGYAGSLAIVISMIVPPYLAMRSREMCQKRFGA
SDTPFDGPLSSPLALRCVMAAGTALLVATV
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mRNA from alignment at P-wetherbeei_contig5946:2509..3442-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5946.2.1 ID=mRNA_P-wetherbeei_contig5946.2.1|Name=mRNA_P-wetherbeei_contig5946.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=934bp|location=Sequence derived from alignment at P-wetherbeei_contig5946:2509..3442- (Phaeothamnion wetherbeei SAG_119_79)
GTTACACTCCTTCCGTTCCGGCGGGCGGGCAGCGTGTACCCTCTGAACGT GATGGTGTTAAGCAATAACATGATGGCCGCCGTCTACCACGACCGCATCG ACAAGGCGGTGAGTGGGTGGGCGACTATCTGCCGTCTCATATTTTATTGT CCTCTCCTTCGGAAAGACAGCTTTCCCTTTCTCTCTCTCTGGCCGTCGCT GGTTGCTGCTTCTCCCGCTGCCGCTTCCGCGGTGGCCATTGCCACCATCG CCGTCTTCACCGCCGCTTCCGCCGCCGCCACGCAGGAGCGGGACCGTGTC ATCGTGACGACGTTCCGGCTGGTATGCGCGCTGCCGCCCATCATCTGCGC CTCGGCCTTCCGCAACCTCGCCAGTATCATCGGATATGCAGGTGGGTGAG CACGCTGGGAACTTCCGCACAGTTCAGACCAATACAGAGCACAAATCGAC AAGTAACTCGAATACTTGAGTACAAGTACGAATATTTTCCGGCGTACTCG TACTGGTCAGCACGTTTTTATGGGCAGCCCGTTGCCCGTTCAGTACTCGG TATTCGTGCATCAACAGTACTCGGGTAATCGTTCTCGTCTCAACTGTGGA ACTTTGCAACGATTGGACCTACTCGTTGCTGCGGCGTCATGTAAACATTG GCGGGGCGGGAGCGGCAGCTTCACCCCCGCCGGCGGATCACTGACAGGTA GTGGTCTTCTCAACTTCACTTCCCTCCCTCCCTTCGGGTTTCGTCCAACC GTTGGCAGGCTCTCTGGCAATCGTGATCAGCATGATCGTGCCGCCATACT TAGCAATGCGCTCCCGCGAAATGTGCCAGAAACGCTTTGGCGCCTCGGAC ACGCCCTTCGACGGGCCGCTGAGCTCGCCACTGGCCCTGCGTTGCGTCAT GGCGGCGGGTACCGCGCTGCTCGTCGCCACGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5946:2509..3442-

>mRNA_P-wetherbeei_contig5946.2.1 ID=mRNA_P-wetherbeei_contig5946.2.1|Name=mRNA_P-wetherbeei_contig5946.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig5946:2509..3442- (Phaeothamnion wetherbeei SAG_119_79)
GTTACACTCCTTCCGTTCCGGCGGGCGGGCAGCGTGTACCCTCTGAACGT
GATGGTGTTAAGCAATAACATGATGGCCGCCGTCTACCACGACCGCATCG
ACAAGGCGGAGCGGGACCGTGTCATCGTGACGACGTTCCGGCTGGTATGC
GCGCTGCCGCCCATCATCTGCGCCTCGGCCTTCCGCAACCTCGCCAGTAT
CATCGGATATGCAGGCTCTCTGGCAATCGTGATCAGCATGATCGTGCCGC
CATACTTAGCAATGCGCTCCCGCGAAATGTGCCAGAAACGCTTTGGCGCC
TCGGACACGCCCTTCGACGGGCCGCTGAGCTCGCCACTGGCCCTGCGTTG
CGTCATGGCGGCGGGTACCGCGCTGCTCGTCGCCACGGTG
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