mRNA_P-wetherbeei_contig5940.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5940.2.1
Unique NamemRNA_P-wetherbeei_contig5940.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5940.2.1 vs. uniprot
Match: A0A7S2SQY1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY1_9STRA)

HSP 1 Score: 109 bits (273), Expect = 4.640e-25
Identity = 61/145 (42.07%), Postives = 79/145 (54.48%), Query Frame = 1
Query:    1 ATNIIRGATTEYGGIFEEPHAAGSDKPRWLTEACLRRLWEAGACPTRLTLGPGEYLHINKGRLHAFRKMQTERLPQAELQRRQRQQLLQIRKLGDVCISVAWDWLFQGGSAAAFTEEIGSALCCAAINREMRVESLAVTQTAVYY 435
            A  I+      Y  ++ +PH AG +KP W TE  +  L   G CP+  TL PG+Y+HINKGRLHAFRK      P    +  Q             C+SVAWDWL+QG SA A  +E+   L CA  N + RV SLA T+TA+ +
Sbjct:  731 ALRILCKGCPSYDALYGKPHDAG-EKPPWPTETQIDELRRRGYCPSVFTLEPGDYVHINKGRLHAFRKRSP---PPGSNEPEQ------------FCVSVAWDWLYQGSSAKALEDEVAEPLACAEYNHKKRVPSLAHTETALLH 859          
BLAST of mRNA_P-wetherbeei_contig5940.2.1 vs. uniprot
Match: A0A7S3L187_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L187_9STRA)

HSP 1 Score: 109 bits (272), Expect = 6.530e-25
Identity = 55/147 (37.41%), Postives = 88/147 (59.86%), Query Frame = 1
Query:    1 ATNIIRGATTEYGGIFEEPHAAGSD--KPRWLTEACLRRLWEAGACPTRLTLGPGEYLHINKGRLHAFRKMQTERLPQAELQRRQRQQLLQIR--KLGDVCISVAWDWLFQGGSAAAFTEEIGSALCCAAINREMRVESLAVTQTAV 429
            A  ++ GA+ +Y  ++ +PH +G    +P W T   + R      CP    L PG+++HINKGRLHAFRKM+T  LP  +     R+ L+ +   K+  +C+SVA+DW+F G ++     E+ + L CA++NR   V+SLA+ +TA+
Sbjct: 1193 ACQMVPGASAKYDALYGKPHDSGMGIVRPDWPTVDTVSRWRGMNYCPAVFILKPGQHIHINKGRLHAFRKMETRVLPATDCHAEMRKSLVTLANLKVSPLCVSVAFDWMFMGTTSDGINREVAACLECASLNRAKGVKSLAIPETAL 1339          
BLAST of mRNA_P-wetherbeei_contig5940.2.1 vs. uniprot
Match: K0SQD9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SQD9_THAOC)

HSP 1 Score: 106 bits (265), Expect = 1.750e-24
Identity = 55/151 (36.42%), Postives = 86/151 (56.95%), Query Frame = 1
Query:    1 ATNIIRGATTEYGGIFEEPHA-AGSDKPR--WLTEACLRRLWEAGACPTRLTLGPGEYLHINKGRLHAFRKMQTERLPQAELQRRQRQQLLQIRKLG---DVCISVAWDWLFQGGSAAAFTEEIGSALCCAAINREMRVESLAVTQTAVYY 435
            A  ++ GA+     +++ PH   G D+ R  W T   +      G CP+   L PG+ +HINKGRLHAFRK+    LP  +    QRQ L+  +K G   D+C S+AWDW+F+G ++     E+   + C+A+N+  +++SLAV  TA+ +
Sbjct:   13 ALRLLTGASDSKATLYDLPHRDQGGDEIRRDWPTAVSIEECKRMGYCPSVFVLKPGQLVHINKGRLHAFRKLAPSPLPPTDCHAVQRQMLMDSKKDGEGEDICFSIAWDWMFKGVTSEGINREVSGLVECSALNQVQKLQSLAVPDTALLF 163          
BLAST of mRNA_P-wetherbeei_contig5940.2.1 vs. uniprot
Match: A0A7S2DKI0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DKI0_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.720e-24
Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = 1
Query:    1 ATNIIRGATTEYGGIFEEPHAAGSDKPRWLTEACLRRLWEAGACPTRLTLGPGEYLHINKGRLHAFRKMQTERLPQAELQRRQRQQLLQIRKLGDVCISVAWDWLFQGGSAAAFTEEIGSALCCAAINREMRVESLAVTQTAV 429
            A  I+ G+   Y  ++  PH  G  KP W T + +  L +   CP+  TL PGE++HINKGRLHAFRK    ++P +            +++    C+SVAWDW++QG S  A  EE+  +L C A+NR+ RV SL   + ++
Sbjct:  142 ALRILNGSCLNYDALYGMPHNDGQ-KPSWPTPSQIESLRDLNYCPSVFTLEPGEFVHINKGRLHAFRK----KIPAS------------VQEPEQFCVSVAWDWIYQGSSPRALKEEMDQSLECVALNRKQRVASLGHVENSI 267          
BLAST of mRNA_P-wetherbeei_contig5940.2.1 vs. uniprot
Match: A0A1E7FK00_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FK00_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.990e-24
Identity = 53/138 (38.41%), Postives = 85/138 (61.59%), Query Frame = 1
Query:   28 TEYGGIFEEPHAAG-SDKPRWLTEACLRRLWEAGACPTRLTLGPGEYLHINKGRLHAFRKMQTERLPQAELQRRQRQQLLQIRKLGD---VCISVAWDWLFQGGSAAAFTEEIGSALCCAAINREMRVESLAVTQTAV 429
            + + G++  PH  G   KP+W T   +      G CP+ LTLGPGE +HINKGRLHAFRKM T +LP+++     R+ +++ + L     +CIS+AWDW+++G ++     E+ + L  + +NR   V+SLA+ + A+
Sbjct:  713 SHFEGLYSVPHGDGLGSKPKWPTMDMVEECKRMGYCPSLLTLGPGELIHINKGRLHAFRKMATTKLPESDCFAEIRRNIIETKGLEGQEKLCISIAWDWMYRGVTSGGINREVCTVLEGSTLNRMNNVKSLAIPELAL 850          
BLAST of mRNA_P-wetherbeei_contig5940.2.1 vs. uniprot
Match: A0A448ZRZ6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZRZ6_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.240e-22
Identity = 56/147 (38.10%), Postives = 86/147 (58.50%), Query Frame = 1
Query:   10 IIRGATTE---YGGIFEEPHAAG-SDKPRWLTEACLRRLWEAGACPTRLTLGPGEYLHINKGRLHAFRKMQTERLPQAELQRRQRQQLLQIRKLGD---VCISVAWDWLFQGGSAAAFTEEIGSALCCAAINREMRVESLAVTQTAV 429
            I+ G+ T+   + G++  PH  G   KP W T+  L    + G CP+ L L PG+ +HINKGRLHAFRKM T  LP  +    QR+ ++  + +     +C+SVAWDW+++G S A    E+ + L  + +NR+  V SLA+ + A+
Sbjct:  727 ILSGSRTDDSHFDGLYSMPHGDGLGKKPPWPTKDMLEDCRKMGYCPSVLILEPGDLVHINKGRLHAFRKMSTSGLPDKDCHFEQRKTMVASKGISGEEKMCVSVAWDWMYRGISPAGINREVCAILEGSTLNRKNNVSSLAIPELAL 873          
BLAST of mRNA_P-wetherbeei_contig5940.2.1 vs. uniprot
Match: A0A7S4EEL1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEL1_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.250e-22
Identity = 57/147 (38.78%), Postives = 86/147 (58.50%), Query Frame = 1
Query:   10 IIRGATTE---YGGIFEEPHAAG-SDKPRWLTEACLRRLWEAGACPTRLTLGPGEYLHINKGRLHAFRKMQTERLPQAELQRRQRQQLLQIRKL--GD-VCISVAWDWLFQGGSAAAFTEEIGSALCCAAINREMRVESLAVTQTAV 429
            I+ G  TE   + G++  PH  G   KP W +   +      G CP+   L PG+ +HINKGRLHAFRKM T +LP  +   + RQ L++ + +  G+ +C+SVAWDW+++G S+A    E+ S L  + +NR   V SLA+ + A+
Sbjct:  712 ILSGKITEGYHFDGLYSVPHGDGLGKKPPWPSNDMVEECKTMGYCPSIFILEPGDLVHINKGRLHAFRKMSTSKLPDWDCHAKPRQNLVESKGMVGGEKLCVSVAWDWMYRGVSSAGINREVCSVLEGSTLNRRNGVTSLAIPELAL 858          
BLAST of mRNA_P-wetherbeei_contig5940.2.1 vs. uniprot
Match: B8CCF4_THAPS (RanBP2-type domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCF4_THAPS)

HSP 1 Score: 97.4 bits (241), Expect = 9.450e-21
Identity = 59/155 (38.06%), Postives = 88/155 (56.77%), Query Frame = 1
Query:    1 ATNIIRG-ATTEYGGIFEEPHAAGSDKP-RWLTE----ACLRRLWE---AGACPTRLTLGPGEYLHINKGRLHAFRKMQTERLPQAELQRRQRQ-QLLQIRKLGDVCISVAWDWLFQGGSAAAFTEEIGSALCCAAINREMRVESLAVTQTAVYY 435
            A  ++ G +T+ +  ++  PH    D P  W T+     C +  W    A  CP+   L PG+ +HINKGRLHAFRK+    LPQ +    +R+  LL+I     VC S+AWDW+F+G ++     EI S L CA +NRE  ++SLA+ +TA+ +
Sbjct:  685 ALRLLNGTSTSSHSTLYGLPHRDDHDTPLSWPTKDAISECKKMGWVLLVAKYCPSVFVLKPGQTVHINKGRLHAFRKLAPSSLPQYDCHHDRRKIMLLEIGNDEIVCSSIAWDWMFKGVTSDGINREISSVLECAWLNRENYLQSLAIPETALVF 839          
BLAST of mRNA_P-wetherbeei_contig5940.2.1 vs. uniprot
Match: A0A7S1ZIK7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZIK7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 9.670e-21
Identity = 52/156 (33.33%), Postives = 87/156 (55.77%), Query Frame = 1
Query:    1 ATNIIRG-------ATTEYGGIFEEPHAAG-SDKPRWLTEACLRRLWEAGACPTRLTLGPGEYLHINKGRLHAFRKMQTERLPQAELQRRQRQQLLQIRKLG---DVCISVAWDWLFQGGSAAAFTEEIGSALCCAAINREMRVESLAVTQTAVYY 435
            A  ++RG       +  +Y  ++  PH  G  ++P W     + R  +    P+   L PG+++HINKGRLHAFRK+    LPQ +   + R+ ++    LG    +C+SVAWDW+F+G ++     E+ S L CA +NR+   +SLA+ +T++ +
Sbjct:  786 ALQLLRGEGNGQTLSNMQYDALYGLPHEDGCGERPMWPDCESIERCRKMNYYPSVFILKPGQHVHINKGRLHAFRKLSPTSLPQTDCHAKLRKSIILDENLGFGEQLCMSVAWDWMFKGVTSEGTNREVASILECARLNRKHMKQSLAIPETSLLH 941          
BLAST of mRNA_P-wetherbeei_contig5940.2.1 vs. uniprot
Match: A0A7S2NZI7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NZI7_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.200e-20
Identity = 49/134 (36.57%), Postives = 76/134 (56.72%), Query Frame = 1
Query:   34 YGGIFEEPHAAGS-DKPRWLTEACLRRLWEAGACPTRLTLGPGEYLHINKGRLHAFRKMQTERLPQAELQRRQRQQLLQIRKLGDV----CISVAWDWLFQGGSAAAFTEEIGSALCCAAINREMRVESLAVTQ 420
            Y  ++  PH  G  DKP W T   + R  E   CP+   L P +++HINKGRLHAFRKM+   LPQ +     R  + +     D     C+S+AWDW+++G ++A    E+ + L C+A+NR+   ++LA+ +
Sbjct:   16 YDALYGLPHGDGYVDKPEWPTHDVVSRWREMNYCPSVFILKPNQHVHINKGRLHAFRKMRCHALPQDDCHFDFRNSIKEKELFSDYTEINCVSIAWDWMYRGVTSAGINREVSTMLECSALNRKNGTQALAIPE 149          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5940.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A7S2SQY1_9STRA4.640e-2542.07Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3L187_9STRA6.530e-2537.41Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
K0SQD9_THAOC1.750e-2436.42Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2DKI0_9STRA2.720e-2437.76Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
A0A1E7FK00_9STRA2.990e-2438.41Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A448ZRZ6_9STRA1.240e-2238.10Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4EEL1_9STRA1.250e-2238.78Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
B8CCF4_THAPS9.450e-2138.06RanBP2-type domain-containing protein (Fragment) n... [more]
A0A7S1ZIK7_9STRA9.670e-2133.33Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2NZI7_9STRA1.200e-2036.57Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5940contigP-wetherbeei_contig5940:2952..3629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps24852
Model size435
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.55e-21
EggNOG OGs2926Q@1|root,2R934@2759|Eukaryota,2XEHI@2836|Bacillariophyta
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186877.0793169-CDS-P-wetherbeei_contig5940:2951..31101683186877.0793169-CDS-P-wetherbeei_contig5940:2951..3110Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5940 2952..3110 -
1683186877.0939753-CDS-P-wetherbeei_contig5940:3175..32441683186877.0939753-CDS-P-wetherbeei_contig5940:3175..3244Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5940 3176..3244 -
1683186877.1042464-CDS-P-wetherbeei_contig5940:3422..36291683186877.1042464-CDS-P-wetherbeei_contig5940:3422..3629Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5940 3423..3629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5940.2.1prot_P-wetherbeei_contig5940.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5940 2952..3629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5940.2.1

>prot_P-wetherbeei_contig5940.2.1 ID=prot_P-wetherbeei_contig5940.2.1|Name=mRNA_P-wetherbeei_contig5940.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
ATNIIRGATTEYGGIFEEPHAAGSDKPRWLTEACLRRLWEAGACPTRLTL
GPGEYLHINKGRLHAFRKMQTERLPQAELQRRQRQQLLQIRKLGDVCISV
AWDWLFQGGSAAAFTEEIGSALCCAAINREMRVESLAVTQTAVYY
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mRNA from alignment at P-wetherbeei_contig5940:2952..3629-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5940.2.1 ID=mRNA_P-wetherbeei_contig5940.2.1|Name=mRNA_P-wetherbeei_contig5940.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=678bp|location=Sequence derived from alignment at P-wetherbeei_contig5940:2952..3629- (Phaeothamnion wetherbeei SAG_119_79)
GCCACGAACATCATCCGCGGCGCCACGACCGAGTACGGCGGCATCTTCGA GGAGCCGCACGCCGCCGGCAGCGACAAGCCGCGGTGGCTGACGGAGGCGT GCCTGCGTCGTCTCTGGGAGGCCGGCGCGTGCCCGACGCGGCTGACGCTC GGCCCCGGCGAGTACCTCCATATCAACAAGGGCCGGTTGCACGCCTTCCG CAAGATGGTGACGCCGGAGGTCGCGGCGGGCGGAACGGTGGTGGCAGCGA ACGGAGCGGCAGCGGCGGCGATGGCAGCGGCAGCGGCAGCGGCCGCTGGC GGAGCTTCTGCGCCAGTGGCGATGGCGTCGGTGGCGGCGGCGACAAACGG AGCAGTGGCAGCAGCAAACGGAGCAGTGGCAGCAGCAAACGGAGCGGCTG CCGCAAGCGGAGCTTCAGCGGCGGCAGCGGCAGCAATTGCTGCAGATCCG CAAGGTGGGCGGCTGGGAGCGGCGCTGGCGAGGGGACCCTTCGGCGCGGC GACGACCCTGGCGCCGGAGCTCGGCGATGTCTGCATCTCCGTCGCGTGGG ACTGGCTGTTTCAGGGCGGCAGTGCCGCCGCTTTTACCGAGGAGATTGGG TCGGCGCTGTGCTGCGCCGCCATAAACCGGGAGATGCGCGTCGAGTCGCT GGCCGTCACCCAGACGGCGGTTTACTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5940:2952..3629-

>mRNA_P-wetherbeei_contig5940.2.1 ID=mRNA_P-wetherbeei_contig5940.2.1|Name=mRNA_P-wetherbeei_contig5940.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig5940:2952..3629- (Phaeothamnion wetherbeei SAG_119_79)
GCCACGAACATCATCCGCGGCGCCACGACCGAGTACGGCGGCATCTTCGA
GGAGCCGCACGCCGCCGGCAGCGACAAGCCGCGGTGGCTGACGGAGGCGT
GCCTGCGTCGTCTCTGGGAGGCCGGCGCGTGCCCGACGCGGCTGACGCTC
GGCCCCGGCGAGTACCTCCATATCAACAAGGGCCGGTTGCACGCCTTCCG
CAAGATGCAAACGGAGCGGCTGCCGCAAGCGGAGCTTCAGCGGCGGCAGC
GGCAGCAATTGCTGCAGATCCGCAAGCTCGGCGATGTCTGCATCTCCGTC
GCGTGGGACTGGCTGTTTCAGGGCGGCAGTGCCGCCGCTTTTACCGAGGA
GATTGGGTCGGCGCTGTGCTGCGCCGCCATAAACCGGGAGATGCGCGTCG
AGTCGCTGGCCGTCACCCAGACGGCGGTTTACTAC
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