mRNA_P-wetherbeei_contig59308.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59308.1.1
Unique NamemRNA_P-wetherbeei_contig59308.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig59308.1.1 vs. uniprot
Match: A0A7X8XLQ0_9BURK (30S ribosomal protein S10 n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XLQ0_9BURK)

HSP 1 Score: 189 bits (480), Expect = 1.150e-60
Identity = 92/103 (89.32%), Postives = 98/103 (95.15%), Query Frame = 1 
Query:    1 MAKQRIRIKLQAYEHGILDESSEKIVQIARQTGANISGPIPLPTSINRYCVLRGPHVDKKSREHFEIRTHKRLIDIYFDPSQKTIEQLMKVDLPAGVDIEIKG 309
            MAKQRIRI+L+AY+H ILDES+EKIVQIARQTGANISGP+PLPT  N +CVLR PHVDKKSREHFEIRTHKRLIDIYFDPSQKTIEQLMKVDLPAGVDIEIKG
Sbjct:    1 MAKQRIRIRLKAYDHAILDESAEKIVQIARQTGANISGPVPLPTEKNVWCVLRSPHVDKKSREHFEIRTHKRLIDIYFDPSQKTIEQLMKVDLPAGVDIEIKG 103
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BLAST of mRNA_P-wetherbeei_contig59308.1.1 vs. uniprot
Match: A0A7Z9PQS6_9BACT (30S ribosomal protein S10 (Fragment) n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PQS6_9BACT)

HSP 1 Score: 161 bits (407), Expect = 1.150e-49
Identity = 78/88 (88.64%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:    1 MAKQRIRIKLQAYEHGILDESSEKIVQIARQTGANISGPIPLPTSINRYCVLRGPHVDKKSREHFEIRTHKRLIDIYFDPSQKTIEQL 264
            MAKQRIRIKL+AYEH +LDES+EKIVQIA+QTGA ISGP+PLPT  +RYCVLRGPHVDKKSREHFEIRTHKRLIDIYFDPSQKTIEQL
Sbjct:    1 MAKQRIRIKLKAYEHNVLDESAEKIVQIAQQTGAAISGPVPLPTVKSRYCVLRGPHVDKKSREHFEIRTHKRLIDIYFDPSQKTIEQL 88
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BLAST of mRNA_P-wetherbeei_contig59308.1.1 vs. uniprot
Match: A0A3M1Z9Q5_9BACT (30S ribosomal protein S10 n=3 Tax=Bacteria TaxID=2 RepID=A0A3M1Z9Q5_9BACT)

HSP 1 Score: 149 bits (377), Expect = 5.680e-45
Identity = 69/102 (67.65%), Postives = 89/102 (87.25%), Query Frame = 1 
Query:    1 MAKQRIRIKLQAYEHGILDESSEKIVQIARQTGANISGPIPLPTSINRYCVLRGPHVDKKSREHFEIRTHKRLIDIYFDPSQKTIEQLMKVDLPAGVDIEIK 306
            M   +IRI+L+AY+H +LD+S ++I++ AR+TGA +SGPIPLPT INR+CVLR PH+DKKSREHFEIRTHKRL+DI  DP+Q+TI+ LMK+DL AGVD+EIK
Sbjct:    1 MTSDKIRIRLKAYDHKLLDQSVKEILEAARRTGARVSGPIPLPTEINRFCVLRSPHIDKKSREHFEIRTHKRLLDI-LDPTQQTIDALMKLDLSAGVDVEIK 101
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BLAST of mRNA_P-wetherbeei_contig59308.1.1 vs. uniprot
Match: A0A2W5YLZ7_9BACT (30S ribosomal protein S10 n=6 Tax=root TaxID=1 RepID=A0A2W5YLZ7_9BACT)

HSP 1 Score: 148 bits (373), Expect = 2.310e-44
Identity = 70/103 (67.96%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:    1 MAKQRIRIKLQAYEHGILDESSEKIVQIARQTGANISGPIPLPTSINRYCVLRGPHVDKKSREHFEIRTHKRLIDIYFDPSQKTIEQLMKVDLPAGVDIEIKG 309
            MAKQ+IRI+L+AY+H +LD+S+E+IV  A++TGA +SGP+PLPT INR+CV R PHVDKKSREHFE+RTHKRLIDI    S KT++ LM +DLPAGVDIE+K 
Sbjct:    1 MAKQKIRIRLKAYDHKVLDQSAERIVDTAKRTGAFVSGPVPLPTEINRFCVNRSPHVDKKSREHFEMRTHKRLIDI-LQASPKTMDALMHLDLPAGVDIELKA 102
[Close]
BLAST of mRNA_P-wetherbeei_contig59308.1.1 vs. uniprot
Match: A0A0S7XGG0_9DELT (30S ribosomal protein S10 n=6 Tax=Bacteria TaxID=2 RepID=A0A0S7XGG0_9DELT)

HSP 1 Score: 147 bits (371), Expect = 4.660e-44
Identity = 68/102 (66.67%), Postives = 90/102 (88.24%), Query Frame = 1 
Query:    1 MAKQRIRIKLQAYEHGILDESSEKIVQIARQTGANISGPIPLPTSINRYCVLRGPHVDKKSREHFEIRTHKRLIDIYFDPSQKTIEQLMKVDLPAGVDIEIK 306
            M +Q+IRI+L+AY+H +LD+S+E+IV+ A++TGA + GPIPLPT INRYCVLR PHVDKKSRE FEIRTHKRL+DI  +P+Q+T++ LM++DL AGVD+EIK
Sbjct:    1 MGEQKIRIRLKAYDHKLLDQSAEEIVETAKRTGAKVVGPIPLPTVINRYCVLRSPHVDKKSREQFEIRTHKRLLDI-LEPTQQTVDALMRLDLSAGVDVEIK 101
[Close]
BLAST of mRNA_P-wetherbeei_contig59308.1.1 vs. uniprot
Match: A0A355UPG5_9CYAN (30S ribosomal protein S10 n=2 Tax=Bacteria TaxID=2 RepID=A0A355UPG5_9CYAN)

HSP 1 Score: 147 bits (371), Expect = 4.660e-44
Identity = 69/102 (67.65%), Postives = 88/102 (86.27%), Query Frame = 1 
Query:    1 MAKQRIRIKLQAYEHGILDESSEKIVQIARQTGANISGPIPLPTSINRYCVLRGPHVDKKSREHFEIRTHKRLIDIYFDPSQKTIEQLMKVDLPAGVDIEIK 306
            M +Q+IRI+L+AY+H ++D S+EKIV+ A++TGA + GPIPLPT  N YCVLR PHVDKKSREHFEIRTHKRLIDI  +P+ KT++ LM++DLPAGVDIE+K
Sbjct:    1 MMQQKIRIRLKAYDHKLIDASTEKIVETAKRTGAQVVGPIPLPTRKNIYCVLRSPHVDKKSREHFEIRTHKRLIDI-LEPTPKTVDALMRLDLPAGVDIEVK 101
[Close]
BLAST of mRNA_P-wetherbeei_contig59308.1.1 vs. uniprot
Match: A0A2H0XXD3_9BACT (30S ribosomal protein S10 n=2 Tax=Cyanobacteria/Melainabacteria group TaxID=1798711 RepID=A0A2H0XXD3_9BACT)

HSP 1 Score: 147 bits (371), Expect = 4.810e-44
Identity = 70/102 (68.63%), Postives = 88/102 (86.27%), Query Frame = 1 
Query:    1 MAKQRIRIKLQAYEHGILDESSEKIVQIARQTGANISGPIPLPTSINRYCVLRGPHVDKKSREHFEIRTHKRLIDIYFDPSQKTIEQLMKVDLPAGVDIEIK 306
            MA+QRIRIKL++Y+H +LD+S+ KIV+ A++ GA +SGP+PLPT I +YCVLR PHVDKKSRE FEIRTHKRLIDI  DP  +T++ LM++DLPAGVDIEIK
Sbjct:    1 MARQRIRIKLKSYDHRVLDQSAAKIVETAKRAGAFVSGPVPLPTEIEKYCVLRSPHVDKKSREIFEIRTHKRLIDI-LDPPPQTVDALMQLDLPAGVDIEIK 101
[Close]
BLAST of mRNA_P-wetherbeei_contig59308.1.1 vs. uniprot
Match: A0A831XFZ3_9BACT (30S ribosomal protein S10 n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A831XFZ3_9BACT)

HSP 1 Score: 147 bits (370), Expect = 6.620e-44
Identity = 68/102 (66.67%), Postives = 88/102 (86.27%), Query Frame = 1 
Query:    1 MAKQRIRIKLQAYEHGILDESSEKIVQIARQTGANISGPIPLPTSINRYCVLRGPHVDKKSREHFEIRTHKRLIDIYFDPSQKTIEQLMKVDLPAGVDIEIK 306
            M +Q++RI+L+AY+H I+D+S+ KIV+ AR+TGA ISGP+PLPT I R+CV+RGP +DK+S EHFEIRTHKRLIDI  DP  KTI+ LM++DLP+GVDIEIK
Sbjct:    1 MRRQKVRIRLKAYDHQIVDQSASKIVETARRTGARISGPVPLPTEIERFCVIRGPTIDKESMEHFEIRTHKRLIDI-LDPGTKTIDALMRLDLPSGVDIEIK 101
[Close]
BLAST of mRNA_P-wetherbeei_contig59308.1.1 vs. uniprot
Match: A0A139DQL8_9DELT (30S ribosomal protein S10 n=1 Tax=Candidatus Adiutrix intracellularis TaxID=1705730 RepID=A0A139DQL8_9DELT)

HSP 1 Score: 146 bits (369), Expect = 9.700e-44
Identity = 67/99 (67.68%), Postives = 88/99 (88.89%), Query Frame = 1 
Query:   10 QRIRIKLQAYEHGILDESSEKIVQIARQTGANISGPIPLPTSINRYCVLRGPHVDKKSREHFEIRTHKRLIDIYFDPSQKTIEQLMKVDLPAGVDIEIK 306
            Q+IRI+L+AY+H +LD S+++IV  A++TGA ++GP+PLPT+INR CVLR PHVDKKSREHFEIRTHKRL+DI  DP+Q+T++ LMK+DL AGVD+EIK
Sbjct:    5 QKIRIRLRAYDHKLLDRSAQEIVDTAKRTGARVAGPVPLPTTINRTCVLRSPHVDKKSREHFEIRTHKRLLDI-LDPTQQTVDALMKLDLSAGVDVEIK 102
[Close]
BLAST of mRNA_P-wetherbeei_contig59308.1.1 vs. uniprot
Match: RS10_GEOSL (30S ribosomal protein S10 n=81 Tax=Bacteria TaxID=2 RepID=RS10_GEOSL)

HSP 1 Score: 146 bits (368), Expect = 1.340e-43
Identity = 69/102 (67.65%), Postives = 88/102 (86.27%), Query Frame = 1 
Query:    1 MAKQRIRIKLQAYEHGILDESSEKIVQIARQTGANISGPIPLPTSINRYCVLRGPHVDKKSREHFEIRTHKRLIDIYFDPSQKTIEQLMKVDLPAGVDIEIK 306
            M  Q+IRI+L+A++H +LD+S  +IV  A++TGA ++GPIPLPT IN+YCVLRGPHVDKKSRE FEIRTHKRLIDI  DP+Q+T++ LMK+DL AGVD+EIK
Sbjct:    1 MPSQKIRIRLKAFDHKLLDQSVGEIVDTAKRTGARVAGPIPLPTVINKYCVLRGPHVDKKSREQFEIRTHKRLIDI-LDPTQQTVDALMKLDLSAGVDVEIK 101
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59308.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X8XLQ0_9BURK1.150e-6089.3230S ribosomal protein S10 n=1 Tax=Burkholderiales ... [more]
A0A7Z9PQS6_9BACT1.150e-4988.6430S ribosomal protein S10 (Fragment) n=1 Tax=Phyci... [more]
A0A3M1Z9Q5_9BACT5.680e-4567.6530S ribosomal protein S10 n=3 Tax=Bacteria TaxID=2... [more]
A0A2W5YLZ7_9BACT2.310e-4467.9630S ribosomal protein S10 n=6 Tax=root TaxID=1 Rep... [more]
A0A0S7XGG0_9DELT4.660e-4466.6730S ribosomal protein S10 n=6 Tax=Bacteria TaxID=2... [more]
A0A355UPG5_9CYAN4.660e-4467.6530S ribosomal protein S10 n=2 Tax=Bacteria TaxID=2... [more]
A0A2H0XXD3_9BACT4.810e-4468.6330S ribosomal protein S10 n=2 Tax=Cyanobacteria/Me... [more]
A0A831XFZ3_9BACT6.620e-4466.6730S ribosomal protein S10 n=1 Tax=Armatimonadetes ... [more]
A0A139DQL8_9DELT9.700e-4467.6830S ribosomal protein S10 n=1 Tax=Candidatus Adiut... [more]
RS10_GEOSL1.340e-4367.6530S ribosomal protein S10 n=81 Tax=Bacteria TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59308contigP-wetherbeei_contig59308:100..411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1125863.JAFN01000001_gene3294
Preferred namerpsJ
PFAMsRibosomal_S10
Model size312
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K02946
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
Evalue9.31e-46
EggNOG OGsCOG0051@1|root,COG0051@2|Bacteria,1RGWF@1224|Proteobacteria,42SE4@68525|delta/epsilon subdivisions,2WP4K@28221|Deltaproteobacteria
DescriptionInvolved in the binding of tRNA to the ribosomes
Cds size312
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186876.2001765-CDS-P-wetherbeei_contig59308:99..4111683186876.2001765-CDS-P-wetherbeei_contig59308:99..411Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59308 100..411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59308.1.1prot_P-wetherbeei_contig59308.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59308 100..411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59308.1.1

>prot_P-wetherbeei_contig59308.1.1 ID=prot_P-wetherbeei_contig59308.1.1|Name=mRNA_P-wetherbeei_contig59308.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
MAKQRIRIKLQAYEHGILDESSEKIVQIARQTGANISGPIPLPTSINRYC
VLRGPHVDKKSREHFEIRTHKRLIDIYFDPSQKTIEQLMKVDLPAGVDIE
IKG*
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mRNA from alignment at P-wetherbeei_contig59308:100..411+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59308.1.1 ID=mRNA_P-wetherbeei_contig59308.1.1|Name=mRNA_P-wetherbeei_contig59308.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig59308:100..411+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTAAACAAAGGATTCGAATCAAGTTGCAGGCCTATGAACACGGTAT
CCTGGATGAATCTTCGGAGAAGATCGTTCAGATTGCTCGCCAGACGGGAG
CCAATATCTCGGGTCCCATTCCCCTGCCGACCTCGATCAACCGTTATTGT
GTCCTGCGCGGACCTCACGTAGACAAAAAGTCTCGTGAGCATTTCGAAAT
TCGTACGCACAAGCGGCTCATCGACATCTATTTCGATCCGTCCCAGAAGA
CGATCGAGCAATTGATGAAGGTCGATTTGCCCGCAGGTGTTGACATCGAG
ATAAAAGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59308:100..411+

>mRNA_P-wetherbeei_contig59308.1.1 ID=mRNA_P-wetherbeei_contig59308.1.1|Name=mRNA_P-wetherbeei_contig59308.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig59308:100..411+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTAAACAAAGGATTCGAATCAAGTTGCAGGCCTATGAACACGGTAT
CCTGGATGAATCTTCGGAGAAGATCGTTCAGATTGCTCGCCAGACGGGAG
CCAATATCTCGGGTCCCATTCCCCTGCCGACCTCGATCAACCGTTATTGT
GTCCTGCGCGGACCTCACGTAGACAAAAAGTCTCGTGAGCATTTCGAAAT
TCGTACGCACAAGCGGCTCATCGACATCTATTTCGATCCGTCCCAGAAGA
CGATCGAGCAATTGATGAAGGTCGATTTGCCCGCAGGTGTTGACATCGAG
ATAAAAGGCTGA
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