mRNA_P-wetherbeei_contig59194.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59194.1.1
Unique NamemRNA_P-wetherbeei_contig59194.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig59194.1.1 vs. uniprot
Match: A0A6I3WMI2_9ACTN (DUF222 domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A6I3WMI2_9ACTN)

HSP 1 Score: 104 bits (260), Expect = 2.260e-23
Identity = 63/161 (39.13%), Postives = 80/161 (49.69%), Query Frame = 1 
Query:   16 AFAHAEFLTRRLQAKQARIAARIEETGHWATDGHRTMRQWVSATINCSPAVATQHVHRSRIARELSKVTKRWADGDIGGCQIDELARLLRNPRAGHQLTESEELLLEQAQQLRYHDFTVVTARWLAYADPDGNIRSHDDTRKQRTASCDFVGSLFRFRADG 498
            AF   E   RRL A QA + A +  +  +  D H T   W  A +N S + A  H   + +  EL  +    A G +G  Q+  LA L  NPR GH L  SEELLL+ A  L   DF  V  RWLA+ADPDG  R H+ +R QR+      G+    RA G
Sbjct:   35 AFMDVERQIRRLVALQAAMLAEVTVSYSYLDDAHHTPVSWAQAVLNSSRSTAMHHTRLAAMLAELPALAAAAAAGHVGSDQLRLLAALHSNPRCGHMLAGSEELLLQHATTLSLGDFRQVCQRWLAHADPDGAHRDHELSRDQRSVKSTSHGAGHELRAQG 195
[Close]
BLAST of mRNA_P-wetherbeei_contig59194.1.1 vs. uniprot
Match: A0A6N2DU73_9ACTN (HNH endonuclease n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DU73_9ACTN)

HSP 1 Score: 97.4 bits (241), Expect = 9.100e-21
Identity = 51/133 (38.35%), Postives = 70/133 (52.63%), Query Frame = 1 
Query:  100 WATDGHRTMRQWVSATINCSPAVATQHVHRSRIARELSKVTKRWADGDIGGCQIDELARLLRNPRAGHQLTESEELLLEQAQQLRYHDFTVVTARWLAYADPDGNIRSHDDTRKQRTASCDFVGSLFRFRADG 498
            W  DGHR+++ W  A    SPA A +     R  R+L +V +R   G+IG CQ+ ELARL  N R   +LT +E L++  A++  + +F V T RW   ADP G  RS D+    R     F  + F F A G
Sbjct:   52 WVLDGHRSVKNWAVAITGTSPAEAARRCQVLRALRDLDEVRERLRAGEIGVCQVRELARLHANRRVRERLTRAEHLMVSAARRRSFDEFRVRTERWRQAADPGGAARSADEVHAARKVETRFTAAGFTFSAHG 184
[Close]
BLAST of mRNA_P-wetherbeei_contig59194.1.1 vs. uniprot
Match: UPI001C639B60 (HNH endonuclease n=2 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C639B60)

HSP 1 Score: 67.0 bits (162), Expect = 6.170e-10
Identity = 39/127 (30.71%), Postives = 60/127 (47.24%), Query Frame = 1 
Query:   31 EFLTRRLQAKQARIAARIEETGHWATDGHRTMRQWVSATINCSPAVATQHVHRSRIARELSKVTKRWADGDIGGCQIDELARLLRNPRAGHQLTESEELLLEQAQQLRYHDFTVVTARWLAYADPDG 411
            E + RR+Q+ Q  + + I+ TG  A DGH + +  V    N S   A +    ++  R L  V + +ADG IG CQ++ +AR   NPR    +  +E     +A    Y  F      W++  D DG
Sbjct:   44 ENVARRVQSLQIDLVSEIDRTGVHAADGHASAKVMVRHHANLSTREAARRAACAKALRSLPSVHQAFADGAIGRCQVERIARAHANPRVRDAVEANEASFAAEAAADAYRVFDQKVREWVSLVDEDG 170
[Close]
BLAST of mRNA_P-wetherbeei_contig59194.1.1 vs. uniprot
Match: UPI001C62D98B (DUF222 domain-containing protein n=4 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C62D98B)

HSP 1 Score: 66.2 bits (160), Expect = 1.140e-9
Identity = 39/127 (30.71%), Postives = 60/127 (47.24%), Query Frame = 1 
Query:   31 EFLTRRLQAKQARIAARIEETGHWATDGHRTMRQWVSATINCSPAVATQHVHRSRIARELSKVTKRWADGDIGGCQIDELARLLRNPRAGHQLTESEELLLEQAQQLRYHDFTVVTARWLAYADPDG 411
            E L R++Q+ Q  + A I+ +G  A DGH + +  V    N S   A +    ++  R L  V   +A+G IG CQ++ +AR   NPR    +  +E     +AQ   Y  F      W++  D DG
Sbjct:   44 ETLGRKVQSVQIDLVAEIDRSGFHAGDGHASAKVMVRHHANLSTREAARRAACAKALRSLPTVGAAFAEGAIGRCQVERIARAHANPRVRDAVEANEASFATEAQTNTYRVFDQKVREWVSLVDEDG 170
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59194.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6I3WMI2_9ACTN2.260e-2339.13DUF222 domain-containing protein n=2 Tax=root TaxI... [more]
A0A6N2DU73_9ACTN9.100e-2138.35HNH endonuclease n=1 Tax=Ilumatobacter sp. TaxID=1... [more]
UPI001C639B606.170e-1030.71HNH endonuclease n=2 Tax=Iamia sp. SCSIO 61187 Tax... [more]
UPI001C62D98B1.140e-930.71DUF222 domain-containing protein n=4 Tax=Iamia sp.... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59194contigP-wetherbeei_contig59194:2..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1313172.YM304_35020
PFAMsDUF222,HNH
Model size498
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.91e-14
EggNOG OGsCOG1403@1|root,COG1403@2|Bacteria
Descriptionendonuclease activity
Cds size498
COG categoryV
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186874.9193892-CDS-P-wetherbeei_contig59194:1..4991683186874.9193892-CDS-P-wetherbeei_contig59194:1..499Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59194 2..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59194.1.1prot_P-wetherbeei_contig59194.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59194 2..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59194.1.1

>prot_P-wetherbeei_contig59194.1.1 ID=prot_P-wetherbeei_contig59194.1.1|Name=mRNA_P-wetherbeei_contig59194.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
DDAALAFAHAEFLTRRLQAKQARIAARIEETGHWATDGHRTMRQWVSATI
NCSPAVATQHVHRSRIARELSKVTKRWADGDIGGCQIDELARLLRNPRAG
HQLTESEELLLEQAQQLRYHDFTVVTARWLAYADPDGNIRSHDDTRKQRT
ASCDFVGSLFRFRADG
back to top

mRNA from alignment at P-wetherbeei_contig59194:2..499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59194.1.1 ID=mRNA_P-wetherbeei_contig59194.1.1|Name=mRNA_P-wetherbeei_contig59194.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig59194:2..499- (Phaeothamnion wetherbeei SAG_119_79)
GACGACGCGGCGTTGGCGTTCGCTCACGCCGAGTTCCTCACCCGCCGCCT
CCAAGCCAAGCAGGCGCGCATCGCCGCAAGGATCGAGGAGACGGGGCACT
GGGCCACGGATGGGCACCGCACCATGCGCCAATGGGTCTCAGCGACGATC
AACTGCTCCCCCGCGGTCGCCACACAACACGTCCACCGCTCCCGGATCGC
TCGTGAGCTGTCGAAGGTCACCAAACGGTGGGCAGATGGCGACATCGGCG
GCTGCCAGATCGACGAACTCGCCCGCCTGCTGCGCAACCCACGCGCCGGC
CACCAGCTCACCGAATCCGAAGAACTCCTGTTGGAACAGGCCCAACAGCT
CCGTTACCACGACTTCACCGTCGTCACTGCCCGCTGGCTCGCCTACGCCG
ACCCCGACGGGAACATCCGGTCACACGACGACACCCGCAAACAACGCACC
GCTTCCTGCGATTTCGTCGGGTCGTTGTTCCGGTTCCGTGCCGACGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig59194:2..499-

>mRNA_P-wetherbeei_contig59194.1.1 ID=mRNA_P-wetherbeei_contig59194.1.1|Name=mRNA_P-wetherbeei_contig59194.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig59194:2..499- (Phaeothamnion wetherbeei SAG_119_79)
GACGACGCGGCGTTGGCGTTCGCTCACGCCGAGTTCCTCACCCGCCGCCT
CCAAGCCAAGCAGGCGCGCATCGCCGCAAGGATCGAGGAGACGGGGCACT
GGGCCACGGATGGGCACCGCACCATGCGCCAATGGGTCTCAGCGACGATC
AACTGCTCCCCCGCGGTCGCCACACAACACGTCCACCGCTCCCGGATCGC
TCGTGAGCTGTCGAAGGTCACCAAACGGTGGGCAGATGGCGACATCGGCG
GCTGCCAGATCGACGAACTCGCCCGCCTGCTGCGCAACCCACGCGCCGGC
CACCAGCTCACCGAATCCGAAGAACTCCTGTTGGAACAGGCCCAACAGCT
CCGTTACCACGACTTCACCGTCGTCACTGCCCGCTGGCTCGCCTACGCCG
ACCCCGACGGGAACATCCGGTCACACGACGACACCCGCAAACAACGCACC
GCTTCCTGCGATTTCGTCGGGTCGTTGTTCCGGTTCCGTGCCGACGGC
back to top