mRNA_P-wetherbeei_contig5907.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5907.1.2
Unique NamemRNA_P-wetherbeei_contig5907.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5907.1.2 vs. uniprot
Match: D7FR97_ECTSI (Ribosome biogenesis protein NSA2 homolog n=3 Tax=PX clade TaxID=569578 RepID=D7FR97_ECTSI)

HSP 1 Score: 484 bits (1247), Expect = 1.010e-170
Identity = 245/260 (94.23%), Postives = 258/260 (99.23%), Query Frame = 3 
Query:   63 MPQHEYMEQHRKRHGERLDRAEKRRKKEAREVHKRSEFAQKVHGLRAKLYQQKRYKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVSDDEMFKVLRSGKRKNKSWKRMVTKVTFVGEGFTRKAPKYERFIRPSALRFKKAHVTHPELQATFHLDILGVKKNPSSPLYTQLGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVSNAPELDGCINAVLLV 842
            MPQHEYME H+KRHGER+DRAEKRRKK+AREVHKRSEFAQKVHG+RAKLYQ+KR+KEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPV+DDEMFKVLRSGKRKNK+WKRMVTKVTFVGEGFTRKAPKYERFIRP+ LRFKKAHVTHPEL+ATFHLDILGVKKNPSSPLYTQLGV+TKGTVIEVNVSDLGLVTQSGKVVWGKYAQV+N+PELDGCINAVLLV
Sbjct:    1 MPQHEYMEAHKKRHGERMDRAEKRRKKDAREVHKRSEFAQKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 260
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BLAST of mRNA_P-wetherbeei_contig5907.1.2 vs. uniprot
Match: A0A7S2SRB9_9STRA (Ribosome biogenesis protein NSA2 homolog n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRB9_9STRA)

HSP 1 Score: 447 bits (1149), Expect = 8.300e-156
Identity = 228/260 (87.69%), Postives = 245/260 (94.23%), Query Frame = 3 
Query:   63 MPQHEYMEQHRKRHGERLDRAEKRRKKEAREVHKRSEFAQKVHGLRAKLYQQKRYKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVSDDEMFKVLRSGKRKNKSWKRMVTKVTFVGEGFTRKAPKYERFIRPSALRFKKAHVTHPELQATFHLDILGVKKNPSSPLYTQLGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVSNAPELDGCINAVLLV 842
            MPQ+E+ME HRKRHGER+D  E+ RK++ARE HKRSEFAQKVHG+RAKLY QKR+KEKATMRKTI+MHQER NKHAND+AVP GAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKW+VPIPKVKPV+DDEMFKVLRSGKRK K+WKRMVTKV FVGE FTRK PKYERFIRP+ LRFKKAHVTHPELQATFHLDI+GVKKNPSS LYTQLGVITKGTVIEVNVS+LGLVTQSGKVVWGKYAQV+N PELDGCINAVLLV
Sbjct:    1 MPQNEHMELHRKRHGERMDAEERSRKRQAREAHKRSEFAQKVHGIRAKLYHQKRFKEKATMRKTISMHQERDNKHANDEAVPKGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWEVPIPKVKPVADDEMFKVLRSGKRKAKAWKRMVTKVCFVGENFTRKNPKYERFIRPTGLRFKKAHVTHPELQATFHLDIIGVKKNPSSSLYTQLGVITKGTVIEVNVSELGLVTQSGKVVWGKYAQVTNNPELDGCINAVLLV 260
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BLAST of mRNA_P-wetherbeei_contig5907.1.2 vs. uniprot
Match: A0A662Y3D7_9STRA (Ribosome biogenesis protein NSA2 homolog n=3 Tax=Oomycota TaxID=4762 RepID=A0A662Y3D7_9STRA)

HSP 1 Score: 447 bits (1151), Expect = 5.260e-155
Identity = 222/260 (85.38%), Postives = 244/260 (93.85%), Query Frame = 3 
Query:   63 MPQHEYMEQHRKRHGERLDRAEKRRKKEAREVHKRSEFAQKVHGLRAKLYQQKRYKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVSDDEMFKVLRSGKRKNKSWKRMVTKVTFVGEGFTRKAPKYERFIRPSALRFKKAHVTHPELQATFHLDILGVKKNPSSPLYTQLGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVSNAPELDGCINAVLLV 842
            MPQHE+ME HRKRHG R+D AEK+RKKEAREVH+RS+FAQKVHGLRAKLY QKR+KEKA M+KT+A+H ERTNKHANDD +PDGAVP+YLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKP++DDEMFKVLRSGKR+NK+WKRM+TK TFVGE FTRK PKYERFIRPSA+RFKKAHVTHPEL+ TF LDILGVKKNP SPLYTQLGV+TKGTVIEVNVS+LGLVT SGKVVWGKYAQ++N PE DGCINAVLLV
Sbjct:   72 MPQHEHMEMHRKRHGVRMDAAEKKRKKEAREVHRRSQFAQKVHGLRAKLYNQKRFKEKAAMKKTLALHNERTNKHANDDEIPDGAVPSYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPIADDEMFKVLRSGKRRNKAWKRMITKATFVGENFTRKPPKYERFIRPSAMRFKKAHVTHPELKTTFQLDILGVKKNPQSPLYTQLGVMTKGTVIEVNVSELGLVTTSGKVVWGKYAQITNVPENDGCINAVLLV 331
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BLAST of mRNA_P-wetherbeei_contig5907.1.2 vs. uniprot
Match: A0A7S2DND8_9STRA (Ribosome biogenesis protein NSA2 homolog n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DND8_9STRA)

HSP 1 Score: 442 bits (1138), Expect = 5.610e-154
Identity = 228/269 (84.76%), Postives = 246/269 (91.45%), Query Frame = 3 
Query:   36 LFGQRPAPTMPQHEYMEQHRKRHGERLDRAEKRRKKEAREVHKRSEFAQKVHGLRAKLYQQKRYKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVSDDEMFKVLRSGKRKNKSWKRMVTKVTFVGEGFTRKAPKYERFIRPSALRFKKAHVTHPELQATFHLDILGVKKNPSSPLYTQLGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVSNAPELDGCINAVLLV 842
            LF  +  P MPQ+E+MEQHRKRHGERLD  E+ RK++AREVHK+S+FAQ VHGLRAKLY QKR+KEKA MRKTIAMHQER NKH NDDA+P  A+PAYLLDREGVSRAKVLSNTVKQKRKEKAGKW+VPIPKVKPV+D+EMFKV+RSGKRK K+WKRMVTKVTFVG  FTRK PKYERFIRPS LRFKKAHVTHPELQATFHLD+LGVKKNPSS LYTQLGVITKGTVIEVNVSDLGLVT SGKVVWGKYAQV+N PELDGCINAVLLV
Sbjct:    2 LFTLQRKPKMPQNEHMEQHRKRHGERLDTEERARKRQAREVHKKSKFAQCVHGLRAKLYNQKRFKEKAVMRKTIAMHQERDNKHGNDDALPKDALPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWNVPIPKVKPVADEEMFKVMRSGKRKAKAWKRMVTKVTFVGPNFTRKNPKYERFIRPSGLRFKKAHVTHPELQATFHLDLLGVKKNPSSNLYTQLGVITKGTVIEVNVSDLGLVTTSGKVVWGKYAQVTNNPELDGCINAVLLV 270
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BLAST of mRNA_P-wetherbeei_contig5907.1.2 vs. uniprot
Match: A0A7S2V588_9STRA (Ribosome biogenesis protein NSA2 homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V588_9STRA)

HSP 1 Score: 439 bits (1129), Expect = 9.150e-153
Identity = 218/260 (83.85%), Postives = 245/260 (94.23%), Query Frame = 3 
Query:   63 MPQHEYMEQHRKRHGERLDRAEKRRKKEAREVHKRSEFAQKVHGLRAKLYQQKRYKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVSDDEMFKVLRSGKRKNKSWKRMVTKVTFVGEGFTRKAPKYERFIRPSALRFKKAHVTHPELQATFHLDILGVKKNPSSPLYTQLGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVSNAPELDGCINAVLLV 842
            MPQHEY+E H+KRHG R+D  E++RK+ ARE H+RS+FAQKVHGLRAKLY ++R+KEKATM+KT+AMHQERTNKH N+DAVP GAVPAYLLDREGVSRAKVLSNT+KQKRKEKAGKWDVPIPKVKPV+DDEMFK++R+GKR+ K+WKRMVTKVTFVG+ FTRKAPKYERFIRP+ LRFKKAHVTHPEL+ATFHL ILGVKKNPSSP+YTQLGVITKGTVIEVNVS+LGLVT SGKVVWGKYAQV+N PELDGCINAVLLV
Sbjct:    1 MPQHEYIELHKKRHGIRMDAEERKRKRAAREAHRRSQFAQKVHGLRAKLYNKQRFKEKATMKKTLAMHQERTNKHGNEDAVPSGAVPAYLLDREGVSRAKVLSNTIKQKRKEKAGKWDVPIPKVKPVADDEMFKIMRTGKRRAKAWKRMVTKVTFVGDDFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLQILGVKKNPSSPMYTQLGVITKGTVIEVNVSELGLVTTSGKVVWGKYAQVTNNPELDGCINAVLLV 260
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BLAST of mRNA_P-wetherbeei_contig5907.1.2 vs. uniprot
Match: W4GLP2_9STRA (Ribosome biogenesis protein NSA2 homolog n=6 Tax=Oomycota TaxID=4762 RepID=W4GLP2_9STRA)

HSP 1 Score: 437 bits (1125), Expect = 3.720e-152
Identity = 218/260 (83.85%), Postives = 241/260 (92.69%), Query Frame = 3 
Query:   63 MPQHEYMEQHRKRHGERLDRAEKRRKKEAREVHKRSEFAQKVHGLRAKLYQQKRYKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVSDDEMFKVLRSGKRKNKSWKRMVTKVTFVGEGFTRKAPKYERFIRPSALRFKKAHVTHPELQATFHLDILGVKKNPSSPLYTQLGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVSNAPELDGCINAVLLV 842
            MPQHE+ME H+KRHG R D  E+ RKKEAREVH+RS FAQKVHGLRAKLY QKR+KEKA M+KT+AMH ERTNKHANDD +PDGAVP+YLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKP++DDEMFKVLRSGKR+NK+WKRM+TK TFVGE FTRK PKYERFIRP+A+RFKKAHVTHPEL+ TF LDILGVKKNPSSPLYTQLGV+TKGT+IEVNVS+LGLVT +GKVVWGK+AQV+N PE DGCINAVLLV
Sbjct:    1 MPQHEHMEMHKKRHGVRYDHHERARKKEAREVHRRSAFAQKVHGLRAKLYNQKRFKEKAAMKKTLAMHNERTNKHANDDNIPDGAVPSYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPIADDEMFKVLRSGKRRNKAWKRMITKATFVGENFTRKPPKYERFIRPAAMRFKKAHVTHPELKTTFQLDILGVKKNPSSPLYTQLGVMTKGTIIEVNVSELGLVTTTGKVVWGKFAQVTNNPENDGCINAVLLV 260
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BLAST of mRNA_P-wetherbeei_contig5907.1.2 vs. uniprot
Match: W7THK2_9STRA (Ribosome biogenesis protein NSA2 homolog n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7THK2_9STRA)

HSP 1 Score: 436 bits (1121), Expect = 1.510e-151
Identity = 220/260 (84.62%), Postives = 242/260 (93.08%), Query Frame = 3 
Query:   63 MPQHEYMEQHRKRHGERLDRAEKRRKKEAREVHKRSEFAQKVHGLRAKLYQQKRYKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVSDDEMFKVLRSGKRKNKSWKRMVTKVTFVGEGFTRKAPKYERFIRPSALRFKKAHVTHPELQATFHLDILGVKKNPSSPLYTQLGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVSNAPELDGCINAVLLV 842
            MPQH+YMEQHRK+HGERLDR E+ RKKEAREVH+RS+FAQKVHGLRAKLY  KRYKEKA MRKT+AMHQE+TNK AN +  P+GAVPAYL+DREG+SRAKVLSN+VKQKR EKAGKW VP+PKVKPV+DDEMFKV++SGKRK KSWKRMVTKVTFVGE FTRKAPK+ERFIRP+ LRFKKAHVTHP+LQATF LDILGVKKNPSSP+YT LGVITKGTVIEVNVS+LGLVT SGKVVWGKYAQV+N PELDGCINAVLLV
Sbjct:    1 MPQHDYMEQHRKKHGERLDREERLRKKEAREVHRRSKFAQKVHGLRAKLYNAKRYKEKAQMRKTLAMHQEKTNKRANQEGAPEGAVPAYLIDREGISRAKVLSNSVKQKRAEKAGKWSVPLPKVKPVADDEMFKVMQSGKRKAKSWKRMVTKVTFVGENFTRKAPKFERFIRPTGLRFKKAHVTHPDLQATFCLDILGVKKNPSSPMYTTLGVITKGTVIEVNVSELGLVTTSGKVVWGKYAQVTNNPELDGCINAVLLV 260
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BLAST of mRNA_P-wetherbeei_contig5907.1.2 vs. uniprot
Match: F0WA33_9STRA (Ribosome biogenesis protein NSA2 homolog n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WA33_9STRA)

HSP 1 Score: 434 bits (1115), Expect = 1.230e-150
Identity = 214/260 (82.31%), Postives = 240/260 (92.31%), Query Frame = 3 
Query:   63 MPQHEYMEQHRKRHGERLDRAEKRRKKEAREVHKRSEFAQKVHGLRAKLYQQKRYKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVSDDEMFKVLRSGKRKNKSWKRMVTKVTFVGEGFTRKAPKYERFIRPSALRFKKAHVTHPELQATFHLDILGVKKNPSSPLYTQLGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVSNAPELDGCINAVLLV 842
            MPQHE++E H+KRHG RLD+ E+ RKKEARE H+RS+FAQKVHGLRAKLY QKR+KEKA M+KT+AMHQERTNK  N+DA+PDGAVP+YLLDREGVS+AK+LSNTVKQKRKEKAGKW VPIPKVKP++DDEMFKVLRSGKR+NKSWKRM+TK TFVGE FTRK PKYERFIRPSA+RFKKAHVTHPELQ TF L I+GVKKNP SPLYTQLGV+TKGT+IEVNVS+LGLVT SGKVVWGKYAQ++N PE DGCINAVLLV
Sbjct:    1 MPQHEHIELHKKRHGVRLDQPERHRKKEAREAHRRSQFAQKVHGLRAKLYNQKRFKEKAAMKKTVAMHQERTNKQGNNDAIPDGAVPSYLLDREGVSKAKILSNTVKQKRKEKAGKWSVPIPKVKPIADDEMFKVLRSGKRRNKSWKRMITKATFVGENFTRKPPKYERFIRPSAMRFKKAHVTHPELQTTFQLAIIGVKKNPQSPLYTQLGVMTKGTIIEVNVSELGLVTTSGKVVWGKYAQITNVPENDGCINAVLLV 260
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BLAST of mRNA_P-wetherbeei_contig5907.1.2 vs. uniprot
Match: B8C4B1_THAPS (Ribosome biogenesis protein NSA2 homolog n=9 Tax=Bacillariophyta TaxID=2836 RepID=B8C4B1_THAPS)

HSP 1 Score: 420 bits (1079), Expect = 3.680e-145
Identity = 211/260 (81.15%), Postives = 235/260 (90.38%), Query Frame = 3 
Query:   63 MPQHEYMEQHRKRHGERLDRAEKRRKKEAREVHKRSEFAQKVHGLRAKLYQQKRYKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVSDDEMFKVLRSGKRKNKSWKRMVTKVTFVGEGFTRKAPKYERFIRPSALRFKKAHVTHPELQATFHLDILGVKKNPSSPLYTQLGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVSNAPELDGCINAVLLV 842
            MPQHE+ME+HRK HG R D  E+ RK+EAR  HKRSEFAQKVHGLRAKLY Q+R+KEKATMRKTIA H ER+NKHANDDAV DGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKW+VPIPKVKPV+DDEMFKV+R+G +KNK+WKR+VTK TFVG+ FTRKAPKYERFIRP+ LR K+A+VTHPEL+ +F LDILGVKKNPSS LYT LGV+TKGT+IEVNVSDLGLVT SGKV WGK AQV+N PELDGC+NAVLLV
Sbjct:    1 MPQHEHMERHRKLHGRRFDAEERERKREARSAHKRSEFAQKVHGLRAKLYNQRRFKEKATMRKTIAQHNERSNKHANDDAVADGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWEVPIPKVKPVADDEMFKVMRTGSKKNKAWKRVVTKCTFVGDNFTRKAPKYERFIRPTGLRMKRANVTHPELKTSFQLDILGVKKNPSSSLYTNLGVLTKGTIIEVNVSDLGLVTTSGKVAWGKMAQVTNNPELDGCVNAVLLV 260
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BLAST of mRNA_P-wetherbeei_contig5907.1.2 vs. uniprot
Match: H3G9L7_PHYRM (Ribosome biogenesis protein NSA2 homolog n=30 Tax=Oomycota TaxID=4762 RepID=H3G9L7_PHYRM)

HSP 1 Score: 417 bits (1071), Expect = 6.060e-144
Identity = 209/260 (80.38%), Postives = 231/260 (88.85%), Query Frame = 3 
Query:   63 MPQHEYMEQHRKRHGERLDRAEKRRKKEAREVHKRSEFAQKVHGLRAKLYQQKRYKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVSDDEMFKVLRSGKRKNKSWKRMVTKVTFVGEGFTRKAPKYERFIRPSALRFKKAHVTHPELQATFHLDILGVKKNPSSPLYTQLGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVSNAPELDGCINAVLLV 842
            MPQHE+ME HRKRHG R+D AEK+RKKEAR VH RS+FAQKV            +KEKA M+KT+A+H ERTNKHANDD +PDGAVP+YLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKP++DDEMFKVLRSGKR+NK+WKRM+TK TFVGE FTRK PKYERFIRPSA+RFKKAHVTHPEL+ TF LDILGVKKNP SPLYTQLGV+TKGT+IEVNVS+LGLVT SGKVVWGKYAQ++N PE DGCINAVLLV
Sbjct:    1 MPQHEHMEMHRKRHGVRMDAAEKKRKKEARAVHTRSQFAQKVXXXXXXXXXXXXFKEKAAMKKTLALHNERTNKHANDDEIPDGAVPSYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPIADDEMFKVLRSGKRRNKAWKRMITKATFVGENFTRKPPKYERFIRPSAMRFKKAHVTHPELKTTFQLDILGVKKNPQSPLYTQLGVMTKGTIIEVNVSELGLVTTSGKVVWGKYAQITNVPENDGCINAVLLV 260
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5907.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR97_ECTSI1.010e-17094.23Ribosome biogenesis protein NSA2 homolog n=3 Tax=P... [more]
A0A7S2SRB9_9STRA8.300e-15687.69Ribosome biogenesis protein NSA2 homolog n=1 Tax=R... [more]
A0A662Y3D7_9STRA5.260e-15585.38Ribosome biogenesis protein NSA2 homolog n=3 Tax=O... [more]
A0A7S2DND8_9STRA5.610e-15484.76Ribosome biogenesis protein NSA2 homolog n=2 Tax=D... [more]
A0A7S2V588_9STRA9.150e-15383.85Ribosome biogenesis protein NSA2 homolog n=1 Tax=F... [more]
W4GLP2_9STRA3.720e-15283.85Ribosome biogenesis protein NSA2 homolog n=6 Tax=O... [more]
W7THK2_9STRA1.510e-15184.62Ribosome biogenesis protein NSA2 homolog n=2 Tax=M... [more]
F0WA33_9STRA1.230e-15082.31Ribosome biogenesis protein NSA2 homolog n=1 Tax=A... [more]
B8C4B1_THAPS3.680e-14581.15Ribosome biogenesis protein NSA2 homolog n=9 Tax=B... [more]
H3G9L7_PHYRM6.060e-14480.38Ribosome biogenesis protein NSA2 homolog n=30 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5907contigP-wetherbeei_contig5907:120..3652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FR97
PFAMsRibosomal_S8e
Model size1093
Max annot lvl2759|Eukaryota
KEGG koko:K14842
Hectar predicted targeting categoryother localisation
GOsGO:0000460,GO:0000470,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
Exons8
Evalue8.55e-173
EggNOG OGsCOG2007@1|root,KOG3163@2759|Eukaryota
Descriptionmaturation of LSU-rRNA
Cds size783
COG categoryJ
BRITEko00000,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5907.1.2prot_P-wetherbeei_contig5907.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5907 368..3590 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186873.355679-UTR-P-wetherbeei_contig5907:119..3671683186873.355679-UTR-P-wetherbeei_contig5907:119..367Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5907 120..367 -
1683186873.447488-UTR-P-wetherbeei_contig5907:3590..36521683186873.447488-UTR-P-wetherbeei_contig5907:3590..3652Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5907 3591..3652 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186873.366982-CDS-P-wetherbeei_contig5907:367..6531683186873.366982-CDS-P-wetherbeei_contig5907:367..653Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5907 368..653 -
1683186873.3777328-CDS-P-wetherbeei_contig5907:1201..12711683186873.3777328-CDS-P-wetherbeei_contig5907:1201..1271Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5907 1202..1271 -
1683186873.3924332-CDS-P-wetherbeei_contig5907:1688..17461683186873.3924332-CDS-P-wetherbeei_contig5907:1688..1746Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5907 1689..1746 -
1683186873.4010603-CDS-P-wetherbeei_contig5907:2021..20901683186873.4010603-CDS-P-wetherbeei_contig5907:2021..2090Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5907 2022..2090 -
1683186873.4097111-CDS-P-wetherbeei_contig5907:2529..26381683186873.4097111-CDS-P-wetherbeei_contig5907:2529..2638Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5907 2530..2638 -
1683186873.4188375-CDS-P-wetherbeei_contig5907:3003..31231683186873.4188375-CDS-P-wetherbeei_contig5907:3003..3123Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5907 3004..3123 -
1683186873.428393-CDS-P-wetherbeei_contig5907:3416..34841683186873.428393-CDS-P-wetherbeei_contig5907:3416..3484Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5907 3417..3484 -
1683186873.4381032-CDS-P-wetherbeei_contig5907:3587..35901683186873.4381032-CDS-P-wetherbeei_contig5907:3587..3590Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5907 3588..3590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5907.1.2

>prot_P-wetherbeei_contig5907.1.2 ID=prot_P-wetherbeei_contig5907.1.2|Name=mRNA_P-wetherbeei_contig5907.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=261bp
MPQHEYMEQHRKRHGERLDRAEKRRKKEAREVHKRSEFAQKVHGLRAKLY
QQKRYKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAK
VLSNTVKQKRKEKAGKWDVPIPKVKPVSDDEMFKVLRSGKRKNKSWKRMV
TKVTFVGEGFTRKAPKYERFIRPSALRFKKAHVTHPELQATFHLDILGVK
KNPSSPLYTQLGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVSNAPEL
DGCINAVLLV*
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mRNA from alignment at P-wetherbeei_contig5907:120..3652-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5907.1.2 ID=mRNA_P-wetherbeei_contig5907.1.2|Name=mRNA_P-wetherbeei_contig5907.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3533bp|location=Sequence derived from alignment at P-wetherbeei_contig5907:120..3652- (Phaeothamnion wetherbeei SAG_119_79)
GTTGCTCGCCGAGACAGTTCGATAGAGTCTAGCCGTTATTCGGGCAACGC
CCGGCACCAACCATGGTAAACTCCTTCAACCAAGACCGGGAGTTTGTACG
GCTGCATGGAGGCCTCACCTTCTTCGTCTCCCCTTCCTCCTCTTGAATCA
CTGAACTAATGACTACAGCCTCAGCATGAGTATATGGAGCAGCATCGCAA
GCGCCATGGCGAGCGCCTCGACCGTGCGGAGAAGAGGTGCGATTGGGGTT
CTCGCTGCTCGAATGCTGTTATCTCCTTCGCCTCCCATAAGATGCGTTGT
GCCTTGTTTTGCATAATTTCATTTGCGCTAGAAAGAAGCAGGTGTTGCCC
TGGCGGATCGGGGCTGTGTTGCATATATTTCAATTCTCCGTTGCCAGATC
CCAGCACTGCTCCTGGTCGCCCCATCAGCAGTAGCGAAAACGGATAGCAT
ATCTATAGGCAGAGAAAACCGAAGCTCGTCTTGTTGTTTGACTTTCTTGC
TCGTACTTGTTTTCTTCCTTTGTCGGCAGGCGAAAGAAAGAGGCACGCGA
GGTGCACAAGCGCTCGGAGTTTGCGCAGAAGGTGCACGGCCTCCGCGCCA
AGCTCTACCAGCAGAAGCGCTACAAGGAGAAGGCCACCATGCGCAAAACG
TTAGTTGTCCTTTCTCTAGTTTTCTTTCCTTTGGTCGGACATTCGGGGAC
ATCCGAGTGGCCTTTCCCTCCAACCTTCTCGTTGCATCGGCATTATCCCG
GTTCTCGTTGCGCGGTTTTCCGCCAATGAAGCTGCGCTGTCTCGGAGACT
GCGTTTTCCACTCCTGCGTTCTCCTTCCGTGCTGAGCCTTGCCTGCTTTT
TTTCTCCCGATGTGTCTGTCACACGCCTTCTTATCTGTCTCTCTCCTCTT
CTCGTCTTTCCACGCCCCATCGTATCCTCGGACCCCCTCCTCCGCGGCTG
GCTGCCGGCCTACCGTTGTCGCCGACGCTGCGGTGGCGCGGCAACGGGCG
ACGGACTTTTGCAGCATTGCGATGCACCAGGAGCGGACCAACAAGCACGC
CAACGACGACGCCGTGCCGGATGGCGCCGTCCCCGCCTACCTGCTCGACC
GCGAGGGCGTGTCTCGGGCAAAGGTGCGGCCGTATCACGCATTTCCTGGT
TTTCTTTTCATTTTCCAGAGCGCGAATCTGAGCGTGCATGGATTTGCTAT
GCGACAGAGGAATCGCCCGTGAGCGAGGGCTACCTAGGTTTGGCGGTGGT
GGCGGCGGCGGCGGCGGTGGTGGCAGCGGTGCTGGTGGGTGTATTGGCGC
CGGGCTCGGGCGCTGCAAGTTTAGTTCCTGCTTGATGAAAGTAATGGCAA
ACTCTTACCATATTTCCTACAGTCAGTCCTTAGATGCAAACCGTCATTGA
CTGTAGAGCATTGCTTTGAAAGGGTTATCCTTTCTCGTCGCTTGGGACTG
ATCTTGTCTTGTTCGGTGCTGTGAGCCTAATTTTTTCCCTTCCTACTCGC
CGCCGCTCTGCTCCATTCTGGCGGCGCCTGCCCGACTCCGAACCGACGTT
GTGTGCTGGCAGGTGCTCAGCAACACGGTCAAGCAAAAGCGGAAAGAGAA
GGCCGGCAAGTGGGACGTTCCCATCCCAAAGGTGATCGAGCGATATGTAT
CCCTCGGCGTGGGATCATGAGATCTGAACTTGGGCTTTTCTTTTCTTTTC
CGTCGTGTCGTTTTTACGTTTTATGTTTCGTTCTGTCTGCTTCTTACAGC
AGTTGGTCCTGCTTTCCCCCTTTTTTGCGTATGCTGCACGGCGTTTGAGG
AGTGTTCGAAAGAAACGTTGTGGGTGGTTGTTGTTGGCTGGTATAAAAAG
GCGCTGCCGCTGAAACAAATGCCTTTCTTTTGATGCGGTTTTCTGTTGTA
TGGCAGGTCAAGCCGGTGTCGGACGACGAGATGTTCAAGGTGCTGCGGAG
CGGCAAGAGAAAAAGTGAGTCTACTCAGTTCCCCTGACTGTGACTTGAAC
TCCCGGGTCAATATTTCGAGTCTTTTGCCCGCGTTTTATGGTGTTTGTAG
CAATTAGTTTTAAGAAGTTAGTTTTCCTTTCGGGGTGGCTGTGCCGCATA
GCATTGGAGCCGCCTGGCATGCGTTTTGTGCAGCGTTTGCCTTCCCTAGG
GCTCTTTCCTGAGAAAGGGAAGGAAGGTTGCGCAGGCTGAAATTCGGCAA
TGGTTGGGCGGCACACGTTCCCCCCCTGGTGGTGCATCGCGCCGCGCCGT
CCAAGCTGCTCGCACCCGGTGCACGAAAGAGCTCGTGCGGCGCTGTCTAA
AGCTGTGCAACGTGAATGCTTTGTCGGATACTGATGACCCTCTTTTCTGT
CGCCGTCTTATCGCCTTTCTTTGCGTTGCAGACAAGTCGTGGAAGCGCAT
GGTCACCAAGGTGACCTTCGTCGGGGAGGGTTTCACAAGAAAAGCGCCCA
AGTGAGTCAAGTCAGTCGGTCTGTCGATTGCGCTCGCAATCTCCACTTAG
GTTGATTTTGGCTGGCGGAGCACACAGTCGCTTTTAGGTCTGGCTTTCTT
ATCGTGTCGCCCTTTCTTCTTTCATGGCCTTGGAAGCTTTGCGGACCGGT
CTCCTTTTGTTGAAGGTTGTAGAGATTTTTTCCAGCGATGCAACGCCGGC
GGCGGTTGGCTGCAGGCGGTGAATAGCGGAAGTTCCAACTATATTTAATA
TTGAGGCTTCCAGATCCGGAAGAGCTGACTTCTCTTAAGCGCCTCTAATG
CCTGCACACCTAGCCTTTATAAATCTATGGGGCAGGTATTGGGTGCCCGG
GCCCGCCCACACCCAACCCCTCCCAAAACAAAAAGGTCGCCGCACTTTTA
AATTTACGGCGGAGGCGGGCGGCTGGCATGCCCGGCGCTGACCAGGCCAC
CGCCCCGTTTTATTGCTGACATCCCGCCGCCGCCCGAACACACTCTTAAC
GAACCGGAAAACGCCCCAAACCCCAAACGATTAATCCAAAACGCGGTAGG
TACGAGCGCTTCATTCGGCCGAGCGCGCTGCGCTTCAAGAAAGCGCACGT
GACTCACCCGGAGCTGCAGGCGACGTTCCACCTCGACATCCTCGGCGTCA
AGAAAAACCCTTCGTCGCCGCTCTACACGCAGCTCGGCGTAATCACCAAG
GGCACGGTGATCGAGGTCAACGTCAGCGACCTGGGGCTCGTGACGCAGAG
CGGCAAGGTGGTGTGGGGCAAGTATGCCCAAGTGTCTAACGCACCGGAAC
TTGATGGGTGTATAAACGCAGTGCTGCTAGTCTGAGACAGCTGTGCAGAG
CGCTGGGGCGGGCGTGGGGGGCCGTCGCCGCTGCTTTTTGGCTGCTTCTG
CCTTTCCTGCCCGTCTAATACACGATGATGACGACGCTGATTGAGAGCAG
GACGGATCTGTTGCGGGGTTTGGCGGGTGCAGCGGACGGCAGCGGCTGCG
TTTGTTTTCCCTGTGAGAGGATGGTGGCATAAATGTCGCTGTGCTGGAGT
GGAAGGAGAAGTGGCGGCGTAAAAGCACGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5907:120..3652-

>mRNA_P-wetherbeei_contig5907.1.2 ID=mRNA_P-wetherbeei_contig5907.1.2|Name=mRNA_P-wetherbeei_contig5907.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=783bp|location=Sequence derived from alignment at P-wetherbeei_contig5907:120..3652- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTCAGCATGAGTATATGGAGCAGCATCGCAAGCGCCATGGCGAGCG
CCTCGACCGTGCGGAGAAGAGGCGAAAGAAAGAGGCACGCGAGGTGCACA
AGCGCTCGGAGTTTGCGCAGAAGGTGCACGGCCTCCGCGCCAAGCTCTAC
CAGCAGAAGCGCTACAAGGAGAAGGCCACCATGCGCAAAACCATTGCGAT
GCACCAGGAGCGGACCAACAAGCACGCCAACGACGACGCCGTGCCGGATG
GCGCCGTCCCCGCCTACCTGCTCGACCGCGAGGGCGTGTCTCGGGCAAAG
GTGCTCAGCAACACGGTCAAGCAAAAGCGGAAAGAGAAGGCCGGCAAGTG
GGACGTTCCCATCCCAAAGGTCAAGCCGGTGTCGGACGACGAGATGTTCA
AGGTGCTGCGGAGCGGCAAGAGAAAAAACAAGTCGTGGAAGCGCATGGTC
ACCAAGGTGACCTTCGTCGGGGAGGGTTTCACAAGAAAAGCGCCCAAGTA
CGAGCGCTTCATTCGGCCGAGCGCGCTGCGCTTCAAGAAAGCGCACGTGA
CTCACCCGGAGCTGCAGGCGACGTTCCACCTCGACATCCTCGGCGTCAAG
AAAAACCCTTCGTCGCCGCTCTACACGCAGCTCGGCGTAATCACCAAGGG
CACGGTGATCGAGGTCAACGTCAGCGACCTGGGGCTCGTGACGCAGAGCG
GCAAGGTGGTGTGGGGCAAGTATGCCCAAGTGTCTAACGCACCGGAACTT
GATGGGTGTATAAACGCAGTGCTGCTAGTCTGA
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