mRNA_P-wetherbeei_contig5882.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5882.3.1
Unique NamemRNA_P-wetherbeei_contig5882.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5882.3.1 vs. uniprot
Match: A0A3L6D8I0_MAIZE (Thaumatin-like protein 1 n=3 Tax=Zea mays TaxID=4577 RepID=A0A3L6D8I0_MAIZE)

HSP 1 Score: 97.4 bits (241), Expect = 2.910e-22
Identity = 47/92 (51.09%), Postives = 60/92 (65.22%), Query Frame = 1
Query:   10 GVAPPSNTTVDVTVADGWSWRIWGRTGCVAGAAAGSLVCKTGDCW-GRADSAGTGSATPVLLAAFTFNPSGSNDFYNLSLIDGYNLPVAMWP 282
            G A P+  +  V    GWS R+W RTGCV  AA+G + C TGDC  G  +  G  +ATP  LA FT +P+G NDFY++SL+DGYNLPV + P
Sbjct:   54 GFALPAGASRAVPAPSGWSGRVWARTGCVQDAASGKVACATGDCGSGSLECDGRNAATPATLAEFTLDPAGGNDFYDVSLVDGYNLPVVVEP 145          
BLAST of mRNA_P-wetherbeei_contig5882.3.1 vs. uniprot
Match: A0A6D2HH01_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HH01_9BRAS)

HSP 1 Score: 92.4 bits (228), Expect = 5.760e-21
Identity = 49/91 (53.85%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    7 GGVAPPSNTTVDVTVADGWSWRIWGRTGC-VAGAAAGSLVCKTGDCWGRADSAGTGSATPVLLAAFTFNPSGSNDFYNLSLIDGYNLPVAM 276
            GG A  S  +VDV    GWS RIWGRTGC   G+ AGS  C TGDC  +   AG G A PV LA FT +PSG  DFY++SL+DGYN+ + +
Sbjct:   55 GGFALNSGASVDVNAPAGWSGRIWGRTGCNFDGSGAGS--CLTGDCGNKLQCAGAGGAPPVSLAEFTISPSGDKDFYDVSLVDGYNVEMGI 143          
BLAST of mRNA_P-wetherbeei_contig5882.3.1 vs. uniprot
Match: A0A835DTA3_9POAL (Uncharacterized protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835DTA3_9POAL)

HSP 1 Score: 89.7 bits (221), Expect = 8.000e-20
Identity = 44/79 (55.70%), Postives = 52/79 (65.82%), Query Frame = 1
Query:   43 VTVADGWSWRIWGRTGCVAGAAAGSLVCKTGDCW-GRADSAGTGSATPVLLAAFTFNPSGSNDFYNLSLIDGYNLPVAM 276
            V    GWS R+W RTGC    A G LVC TGDC  G A+ AG G+A P  LA FT + SG  DFY++SL+DGYNLPV +
Sbjct:   65 VAAPSGWSGRMWARTGCTHDGATGRLVCATGDCGSGAAECAGAGAAPPATLAEFTLDGSGGLDFYDVSLVDGYNLPVLV 143          
BLAST of mRNA_P-wetherbeei_contig5882.3.1 vs. uniprot
Match: A0A5J9V5V3_9POAL (Uncharacterized protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9V5V3_9POAL)

HSP 1 Score: 90.9 bits (224), Expect = 1.380e-19
Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 1
Query:   43 VTVADGWSWRIWGRTGCVAGAAAGSLVCKTGDCW-GRADSAGTGSATPVLLAAFTFNPSGSNDFYNLSLIDGYNLPVAMWP 282
            V    GWS R+W RTGC    A G LVC TGDC  G A+ AG G+A P  LA FT + SG  DFY++SL+DGYNLPV + P
Sbjct:   64 VAAPSGWSGRMWARTGCSQDGATGRLVCATGDCGSGAAECAGAGAAPPATLAEFTLDGSGGLDFYDVSLVDGYNLPVLVEP 144          
BLAST of mRNA_P-wetherbeei_contig5882.3.1 vs. uniprot
Match: A0A453T856_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453T856_AEGTS)

HSP 1 Score: 89.0 bits (219), Expect = 1.470e-19
Identity = 47/100 (47.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:   10 GVAPPSNT--------TVDVTVADGWSWRIWGRTGCVAGAAAGSLVCKTGDCW-GRADSAGTGSATPVLLAAFTFNPSGSNDFYNLSLIDGYNLPVAMWP 282
            GVAPPS T        +  V VADGWS R+WGRT C  G++     C TGDC  G  + +G G+A P  LA FT    G +DFY++SL+DG+N+PV + P
Sbjct:   19 GVAPPSTTGFMLSPGESRAVAVADGWSGRMWGRTLCEQGSSGAGFACTTGDCGTGTVECSGRGAAPPATLAEFTLASVGGDDFYDVSLVDGFNVPVLVAP 118          
BLAST of mRNA_P-wetherbeei_contig5882.3.1 vs. uniprot
Match: A0A0D9VFL2_9ORYZ (Uncharacterized protein n=2 Tax=Oryzinae TaxID=1648021 RepID=A0A0D9VFL2_9ORYZ)

HSP 1 Score: 89.7 bits (221), Expect = 1.700e-19
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   13 VAPPSNTTVDVTVADGWSWRIWGRTGCVAGAAAGSLVCKTGDCW-GRADSAGTGSATPVLLAAFTFNPSGSNDFYNLSLIDGYNLPVAMWP 282
            +AP  + T+ V    GWS R+WGRT C    A G   C TGDC  GR D AG G+A PV LA FT + SG  DFY++SL+DGYNLP+ + P
Sbjct:   58 LAPGESRTMSVPT--GWSGRLWGRTHCSTDDATGKFTCVTGDCGSGRQDCAGGGAAPPVTLAEFTMDGSGGMDFYDVSLVDGYNLPMLVAP 146          
BLAST of mRNA_P-wetherbeei_contig5882.3.1 vs. uniprot
Match: A0A453T871_AEGTS (Uncharacterized protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453T871_AEGTS)

HSP 1 Score: 89.0 bits (219), Expect = 1.920e-19
Identity = 47/100 (47.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:   10 GVAPPSNT--------TVDVTVADGWSWRIWGRTGCVAGAAAGSLVCKTGDCW-GRADSAGTGSATPVLLAAFTFNPSGSNDFYNLSLIDGYNLPVAMWP 282
            GVAPPS T        +  V VADGWS R+WGRT C  G++     C TGDC  G  + +G G+A P  LA FT    G +DFY++SL+DG+N+PV + P
Sbjct:   19 GVAPPSTTGFMLSPGESRAVAVADGWSGRMWGRTLCEQGSSGAGFACTTGDCGTGTVECSGRGAAPPATLAEFTLASVGGDDFYDVSLVDGFNVPVLVAP 118          
BLAST of mRNA_P-wetherbeei_contig5882.3.1 vs. uniprot
Match: A0A3L6D7B3_MAIZE (Glucan endo-1,3-beta-glucosidase n=3 Tax=Zea mays TaxID=4577 RepID=A0A3L6D7B3_MAIZE)

HSP 1 Score: 88.6 bits (218), Expect = 2.070e-19
Identity = 43/74 (58.11%), Postives = 51/74 (68.92%), Query Frame = 1
Query:   58 GWSWRIWGRTGCVAGAAAGSLVCKTGDCW-GRADSAGTGSATPVLLAAFTFNPSGSNDFYNLSLIDGYNLPVAM 276
            GWS R+W RTGC    A G LVC TGDC  G A+ AG G+A P  LA FT + SG  DFY++SL+DGYNLPV +
Sbjct:   69 GWSGRMWARTGCSQDGATGRLVCATGDCGSGSAECAGAGAAPPATLAEFTLDGSGGLDFYDVSLVDGYNLPVLV 142          
BLAST of mRNA_P-wetherbeei_contig5882.3.1 vs. uniprot
Match: A0A3B6TYR5_WHEAT (Uncharacterized protein n=1 Tax=Triticum aestivum TaxID=4565 RepID=A0A3B6TYR5_WHEAT)

HSP 1 Score: 89.0 bits (219), Expect = 2.640e-19
Identity = 47/100 (47.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:   10 GVAPPSNT--------TVDVTVADGWSWRIWGRTGCVAGAAAGSLVCKTGDCW-GRADSAGTGSATPVLLAAFTFNPSGSNDFYNLSLIDGYNLPVAMWP 282
            GVAPPS T        +  V VADGWS R+WGRT C  G++     C TGDC  G  + +G G+A P  LA FT    G +DFY++SL+DG+N+PV + P
Sbjct:   45 GVAPPSTTGFMLSPGESRAVAVADGWSGRMWGRTLCEQGSSGAGFACTTGDCGTGTVECSGRGAAPPATLAEFTLASVGGDDFYDVSLVDGFNVPVLVAP 144          
BLAST of mRNA_P-wetherbeei_contig5882.3.1 vs. uniprot
Match: A0A453T8A6_AEGTS (Uncharacterized protein n=3 Tax=Triticinae TaxID=1648030 RepID=A0A453T8A6_AEGTS)

HSP 1 Score: 89.0 bits (219), Expect = 2.670e-19
Identity = 47/100 (47.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:   10 GVAPPSNT--------TVDVTVADGWSWRIWGRTGCVAGAAAGSLVCKTGDCW-GRADSAGTGSATPVLLAAFTFNPSGSNDFYNLSLIDGYNLPVAMWP 282
            GVAPPS T        +  V VADGWS R+WGRT C  G++     C TGDC  G  + +G G+A P  LA FT    G +DFY++SL+DG+N+PV + P
Sbjct:   41 GVAPPSTTGFMLSPGESRAVAVADGWSGRMWGRTLCEQGSSGAGFACTTGDCGTGTVECSGRGAAPPATLAEFTLASVGGDDFYDVSLVDGFNVPVLVAP 140          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5882.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3L6D8I0_MAIZE2.910e-2251.09Thaumatin-like protein 1 n=3 Tax=Zea mays TaxID=45... [more]
A0A6D2HH01_9BRAS5.760e-2153.85Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A835DTA3_9POAL8.000e-2055.70Uncharacterized protein n=1 Tax=Digitaria exilis T... [more]
A0A5J9V5V3_9POAL1.380e-1955.56Uncharacterized protein n=1 Tax=Eragrostis curvula... [more]
A0A453T856_AEGTS1.470e-1947.00Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A0D9VFL2_9ORYZ1.700e-1951.65Uncharacterized protein n=2 Tax=Oryzinae TaxID=164... [more]
A0A453T871_AEGTS1.920e-1947.00Uncharacterized protein n=2 Tax=Aegilops tauschii ... [more]
A0A3L6D7B3_MAIZE2.070e-1958.11Glucan endo-1,3-beta-glucosidase n=3 Tax=Zea mays ... [more]
A0A3B6TYR5_WHEAT2.640e-1947.00Uncharacterized protein n=1 Tax=Triticum aestivum ... [more]
A0A453T8A6_AEGTS2.670e-1947.00Uncharacterized protein n=3 Tax=Triticinae TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5882contigP-wetherbeei_contig5882:2789..3070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4577.GRMZM2G149798_P01
PFAMsThaumatin
Model size282
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009723,GO:0009725,GO:0010033,GO:0042221,GO:0043207,GO:0050896,GO:0051704,GO:0051707
Exons1
Evalue1.83e-22
EggNOG OGs2CM7G@1|root,2QPIR@2759|Eukaryota,37NTM@33090|Viridiplantae,3GE14@35493|Streptophyta,3KSCY@4447|Liliopsida,3IAX8@38820|Poales
DescriptionThaumatin family
Cds size282
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186870.170942-CDS-P-wetherbeei_contig5882:2788..30701683186870.170942-CDS-P-wetherbeei_contig5882:2788..3070Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5882 2789..3070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5882.3.1prot_P-wetherbeei_contig5882.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5882 2789..3070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5882.3.1

>prot_P-wetherbeei_contig5882.3.1 ID=prot_P-wetherbeei_contig5882.3.1|Name=mRNA_P-wetherbeei_contig5882.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
ATGGVAPPSNTTVDVTVADGWSWRIWGRTGCVAGAAAGSLVCKTGDCWGR
ADSAGTGSATPVLLAAFTFNPSGSNDFYNLSLIDGYNLPVAMWP
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mRNA from alignment at P-wetherbeei_contig5882:2789..3070+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5882.3.1 ID=mRNA_P-wetherbeei_contig5882.3.1|Name=mRNA_P-wetherbeei_contig5882.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig5882:2789..3070+ (Phaeothamnion wetherbeei SAG_119_79)
GCGACAGGTGGAGTGGCGCCCCCTTCCAACACGACGGTGGACGTGACTGT CGCCGATGGGTGGAGTTGGAGAATTTGGGGAAGAACGGGCTGCGTCGCCG GCGCGGCGGCGGGCAGCCTCGTCTGCAAGACCGGCGACTGCTGGGGTCGC GCGGACAGTGCGGGCACCGGCAGCGCGACGCCTGTGTTGCTGGCCGCGTT CACGTTCAACCCAAGTGGCAGCAACGACTTCTACAACCTGTCGCTCATCG ACGGCTACAACCTCCCCGTCGCCATGTGGCCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5882:2789..3070+

>mRNA_P-wetherbeei_contig5882.3.1 ID=mRNA_P-wetherbeei_contig5882.3.1|Name=mRNA_P-wetherbeei_contig5882.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig5882:2789..3070+ (Phaeothamnion wetherbeei SAG_119_79)
GCGACAGGTGGAGTGGCGCCCCCTTCCAACACGACGGTGGACGTGACTGT
CGCCGATGGGTGGAGTTGGAGAATTTGGGGAAGAACGGGCTGCGTCGCCG
GCGCGGCGGCGGGCAGCCTCGTCTGCAAGACCGGCGACTGCTGGGGTCGC
GCGGACAGTGCGGGCACCGGCAGCGCGACGCCTGTGTTGCTGGCCGCGTT
CACGTTCAACCCAAGTGGCAGCAACGACTTCTACAACCTGTCGCTCATCG
ACGGCTACAACCTCCCCGTCGCCATGTGGCCT
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