mRNA_P-wetherbeei_contig5877.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5877.1.1
Unique NamemRNA_P-wetherbeei_contig5877.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5877.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5877contigP-wetherbeei_contig5877:438..3462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size799
Hectar predicted targeting categorysignal peptide
Exons9
Cds size489
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5877.1.1prot_P-wetherbeei_contig5877.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5877 438..3153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186869.4485066-CDS-P-wetherbeei_contig5877:437..5381683186869.4485066-CDS-P-wetherbeei_contig5877:437..538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5877 438..538 -
1683186869.4584064-CDS-P-wetherbeei_contig5877:757..8161683186869.4584064-CDS-P-wetherbeei_contig5877:757..816Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5877 758..816 -
1683186869.4683423-CDS-P-wetherbeei_contig5877:1046..11071683186869.4683423-CDS-P-wetherbeei_contig5877:1046..1107Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5877 1047..1107 -
1683186869.4784875-CDS-P-wetherbeei_contig5877:1343..13731683186869.4784875-CDS-P-wetherbeei_contig5877:1343..1373Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5877 1344..1373 -
1683186869.488845-CDS-P-wetherbeei_contig5877:1704..17311683186869.488845-CDS-P-wetherbeei_contig5877:1704..1731Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5877 1705..1731 -
1683186869.4987879-CDS-P-wetherbeei_contig5877:2052..21061683186869.4987879-CDS-P-wetherbeei_contig5877:2052..2106Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5877 2053..2106 -
1683186869.5092897-CDS-P-wetherbeei_contig5877:2335..23831683186869.5092897-CDS-P-wetherbeei_contig5877:2335..2383Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5877 2336..2383 -
1683186869.5197713-CDS-P-wetherbeei_contig5877:2666..26971683186869.5197713-CDS-P-wetherbeei_contig5877:2666..2697Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5877 2667..2697 -
1683186869.5302472-CDS-P-wetherbeei_contig5877:3075..31531683186869.5302472-CDS-P-wetherbeei_contig5877:3075..3153Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5877 3076..3153 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186869.540946-UTR-P-wetherbeei_contig5877:3153..34621683186869.540946-UTR-P-wetherbeei_contig5877:3153..3462Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5877 3154..3462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5877.1.1

>prot_P-wetherbeei_contig5877.1.1 ID=prot_P-wetherbeei_contig5877.1.1|Name=mRNA_P-wetherbeei_contig5877.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
MRVCSSFAFLAIGAVAGKAAAADFTGTAGNDVIIGGPGNDSIFGFAGDDN
LFGNSGSDFISAAMGKDTVQGGAGIDIIIGGGWKDVLSGGSGDDIISGSI
GQDILNGQAGWDTLKGGLGNDKLSGGPAGALSAAAPFETLLPGQGSDVIF
CGLDADHIIFTGP
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mRNA from alignment at P-wetherbeei_contig5877:438..3462-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5877.1.1 ID=mRNA_P-wetherbeei_contig5877.1.1|Name=mRNA_P-wetherbeei_contig5877.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3025bp|location=Sequence derived from alignment at P-wetherbeei_contig5877:438..3462- (Phaeothamnion wetherbeei SAG_119_79)
AGCACTATGCAGGGACAGGAGCCCTGCCACGCTCCAGAGCGCCGTGCGGC
ACCGCATTCCCGGGCGCCCGACAGCAGGGTCAAATCTGCCGTACGAAAGA
TACTCCGCACATGATATCTTCCCACGGAATCAAACGACAAATAAGCTCTC
ACTGTCGACGATTGGGTAATTTTTGGCTTAGTTTGCCCCAGCGCTGAATT
ATTTTCCCACTTTCCGCAAGGCACCAGAGTCGCACGCAGCTTGCCTCGAC
GCCGCGCGCCTCTTCCTACGCCTTCCTCGTCCTTCGCCCGCCCTCCCTGA
GCAACAAAGATGCGTGTCTGCAGCAGTTTCGCCTTCCTTGCCATCGGCGC
CGTCGCCGGCAAGGCCGCCGCTGCCGACTTTACCGGGGTGAGTTCCGAAC
TCGTGCGAGCTCAGAGCCCTCTTTGCCACGGCGAGCGCGGCTCGCCGCGA
AGGCCTCTGCTGGTGTGGCATGGCCTTTGCTGTCTGCCGTTTCCATCCTC
CCTCGCGTTTTTGCTGCCAACTTTCTCCGCCTTCGACGAGTCTCATGAGC
GAAGCGGCGAAGAATGCCTGCGGAAGCCCCGGGGCCACGCTGCGCTGCCT
GACTGGACCCGTTCATCCCTCTGTGCCGCGAAGCTGGTCGAGTCGTTCGT
CATTGCACCTCTTGACTTTGTGCTTGCTGACAGCCAGGCCCCTCCCCTTT
TTCCCCTCTCTTGTCCCACCCACCCCTCCTTCTTTTGTCGCCGGTTGCCC
ACTCTTCCTTCGCAGACCGCCGGCAATGACGTAATCATCGGCGGACGTGA
GTCGCTCTGATCTCTACTGCAAAGCGACCGACTTCTGGCCGGCGGCCGAG
GCGGCAGATGCCACTCCTCTTGCTCCTCCCTCATAAAACTTTGCTCCGCC
GGTTCTCGCTCCTTCCATACCCGCTCATGTCCCCCGCCCTGTTTGCCTCT
CTCTCTCTCTCTCTCTCTCTTCTCTCCCACGCAACCCTCCTTTTCTCGTG
AAAATCGGCGCATCGCTGCTGCCGCGTCTGGACCCATCCCTTTCTCCTGA
TGTCGTCGCTTTCGGTCCCCTTTTGTCAGCCGGCAATGACAGCATTTTCG
GATTCGCCGGCGACGACAACCTGTTCGGTGCGTGCACCCTTCCTGCTCCT
CTCGTCTTTCTATCATCTATTTTTTCTTGTGTTCGCTGCATCGGGGTCAT
CTCTTTCTCTCGCTTTTCCTTGCCGAAGAATCCCTTCGCCCATTTACTGT
CCCAAGTTTCTTTCCTCTCAAGATCTCTTGGGAAGATCAGCTTTTCCGTC
AGGTGTTCCTTTGACGGCATGCCGAAACCAATCCTTGCTGCTTTGGCTCG
CCGCAGGTAACAGTGGCTCGGACTTCATCAGCGCGGCAATGGGCAAGGAC
ACGGTGCAGGGTGAGGGGGGTGGAAAAAGAGCCATTGTGAAGAAAGAAAC
TCGGCTTCTCTGTCCGTTCAGACTGTCAGCTTTGGTTTCAAAGGGAAAAA
CGATTTTTCCCCGTATTGCTTGCAATTTTATCACAAACAGCTGCCTTCGC
AGCAACCCCTTTTCCCGCGGCCGAAAATCATCCCGGAAACTGTGAGAGGA
AAAGAGTATCTCTCCGTGTTTCGTCTGAGGCGCGCTGAGAACCGCCCTGC
TCCTCCCCGCCCCCCTCGCCTCACTCCTCCCATGACCCCGAAACAACTGA
ATTCCCTCGGCCCGCCCCCTCTTTTCTCCAGGTGGCGCCGGCATTGACAT
CATTATCGGTGCGTCAGGTTTGCTGTAGAGCTTCCCTATTGGAACGAAGC
GACTCTGTCTGACCCAATGCAACGTGCTGTGGTTTGTGCAACTGCCACGT
TACCGCCCGAAACCGCAGCCAATCCGTTGCGGGCGGCCGGCGCGGGCGAT
CGCAGCAGCCCTTGGCGAATATTCTATGTCACCGCGCTGCATCACGCCGC
GTGTTAAGCTCGCAAGTCATTTGGCCCAACCCCCGCCCTCCGGCCAAAAG
TTGTCCTTGTCTGCGGCGTCTCCTCTTGAATGTTCTTCTGCCTCCCTTCT
CCGTTCTCCGTCGCCTTTCTTCCTTTCTTCGCTCCCCAGGCGGCGGTTGG
AAGGACGTGCTTTCTGGAGGTGAGAGTTGCTGCGGTTTTTCCTTCTGGTT
TCTTCCCTGGTGCCGATCGCTTTTCTTATTTCTGACGTCGAAAAGGTGGC
GGTTGGAAGATATGCCGAGCAGCTGCAACGGTCTAGTCCCCCTTTCTCGC
TCCTTCCGCTCTTCGCATTGCTTTCTCGTCAAGTTGCCCACGGTCCCTCC
CCTCTCCCTCCGCCTTCCCCGTTTATTCCCCGTCGATATGCCCCTTGTAA
AACAGGTTCCGGGGACGACATCATCAGTGGGAGCATCGGCCAGGACATCC
TGAACGGCCAGGCCGGGTGAGTGCAGCCCAGGGGGCGCTTTTCGCTTTCC
AGTTGGAAGTCACCACGATTTCGCGTTCCGGGTGACAAGACGGACGGGCC
CGTCTTTCCTGCTCTCAGTTTTGGCCTCCGTTTCCCTCACTCCGCCCTGT
TTCGGGCCCCCGTCTTTTCTCCGCACTTCTCTCTTCTGATCACCAACGGT
GCCCCCCCCCAAACTGCCTCGTCACCTTGTTTCCTTCGCGCCACAGTTGG
GACACGCTCAAGGGGGGCCTAGGAAATGACAAGCTCAGTGGCGGCCCAGC
GGGCGGTGAGTCTCTTTCTTCCCCGTTGTTTGCGTCGACGTGCTCGCTGT
CCGTTCGGCGTTCAACGCCTTTTCGCGCATCTCCAATCCGGCGTCCACCG
CTTCTTTCCGCTACCGCAGCCTCCTCCTTTTGCGGCTGCCACCGCTTCCC
GCCGCTGCCTCTCAACTACTCCGCCACTCACCCGCTTGCCGCAATCCTGC
CACACACACCGCCTCGGCCCGCAGCTCTCAGCGCCGCTGCCCCGTTCGAG
ACGCTCCTGCCCGGACAGGGCTCCGACGTCATCTTCTGCGGCTTGGATGC
TGACCACATCATCTTCACCGGCCCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5877:438..3462-

>mRNA_P-wetherbeei_contig5877.1.1 ID=mRNA_P-wetherbeei_contig5877.1.1|Name=mRNA_P-wetherbeei_contig5877.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig5877:438..3462- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTGTCTGCAGCAGTTTCGCCTTCCTTGCCATCGGCGCCGTCGCCGG
CAAGGCCGCCGCTGCCGACTTTACCGGGACCGCCGGCAATGACGTAATCA
TCGGCGGACCCGGCAATGACAGCATTTTCGGATTCGCCGGCGACGACAAC
CTGTTCGGTAACAGTGGCTCGGACTTCATCAGCGCGGCAATGGGCAAGGA
CACGGTGCAGGGTGGCGCCGGCATTGACATCATTATCGGCGGCGGTTGGA
AGGACGTGCTTTCTGGAGGTTCCGGGGACGACATCATCAGTGGGAGCATC
GGCCAGGACATCCTGAACGGCCAGGCCGGTTGGGACACGCTCAAGGGGGG
CCTAGGAAATGACAAGCTCAGTGGCGGCCCAGCGGGCGCTCTCAGCGCCG
CTGCCCCGTTCGAGACGCTCCTGCCCGGACAGGGCTCCGACGTCATCTTC
TGCGGCTTGGATGCTGACCACATCATCTTCACCGGCCCT
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