mRNA_P-wetherbeei_contig58750.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58750.1.1
Unique NamemRNA_P-wetherbeei_contig58750.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58750.1.1 vs. uniprot
Match: A0A0Q7TW13_9HYPH (Phosphoribosylamine--glycine ligase n=2 Tax=unclassified Pseudolabrys TaxID=2638514 RepID=A0A0Q7TW13_9HYPH)

HSP 1 Score: 209 bits (533), Expect = 4.070e-64
Identity = 101/126 (80.16%), Postives = 113/126 (89.68%), Query Frame = 1 
Query:    1 MSDLLPALMAARDGQLKNFNLRLYPDAALTVVMAAKGYPGSYSKGSVIEGLEDAAQTEAVEIFHAGTRKDGDHIVANGGRVLNVCARGNSVAQAQQRAYAAVDKIKWPDGFCRRDIGWQAIARERK 378
            MSDLLPAL+AARDGQLK+F+LR YPDAALTVVMAAKGYPGSY KG+VI GL+ AAQ + VEIFHAGT+K+   IVANGGRVLNVCARG +VA+AQ RAYAAVDKI WPDGFCRRDIGWQAI RE++
Sbjct:  300 MSDLLPALIAARDGQLKHFDLRWYPDAALTVVMAAKGYPGSYKKGTVIGGLDTAAQLDGVEIFHAGTKKENGAIVANGGRVLNVCARGKTVAEAQARAYAAVDKIDWPDGFCRRDIGWQAITREQQ 425
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BLAST of mRNA_P-wetherbeei_contig58750.1.1 vs. uniprot
Match: UPI0010BF027E (phosphoribosylamine--glycine ligase n=1 Tax=Pseudolabrys sp. FHR47 TaxID=2562284 RepID=UPI0010BF027E)

HSP 1 Score: 208 bits (529), Expect = 1.460e-63
Identity = 98/125 (78.40%), Postives = 115/125 (92.00%), Query Frame = 1 
Query:    1 MSDLLPALMAARDGQLKNFNLRLYPDAALTVVMAAKGYPGSYSKGSVIEGLEDAAQTEAVEIFHAGTRKDGDHIVANGGRVLNVCARGNSVAQAQQRAYAAVDKIKWPDGFCRRDIGWQAIARER 375
            MSD+LPAL+AARDGQLKNF+LR Y DAALTVVMAAKGYPGSY+KG+VI+GL+ AA+ + VEIFHAGT+ +GD+IVANGGRVLNVCARG +VA+AQ RAY AVD+I WP+GFCRRDIGWQAIARE+
Sbjct:  299 MSDILPALIAARDGQLKNFDLRWYGDAALTVVMAAKGYPGSYAKGTVIKGLDAAAEIDGVEIFHAGTKAEGDNIVANGGRVLNVCARGKTVAEAQARAYEAVDRIDWPEGFCRRDIGWQAIAREK 423
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BLAST of mRNA_P-wetherbeei_contig58750.1.1 vs. uniprot
Match: UPI001E2DF685 (phosphoribosylamine--glycine ligase n=1 Tax=Leptospira sp. severe_002 TaxID=2838237 RepID=UPI001E2DF685)

HSP 1 Score: 202 bits (513), Expect = 3.920e-61
Identity = 95/125 (76.00%), Postives = 108/125 (86.40%), Query Frame = 1 
Query:    1 MSDLLPALMAARDGQLKNFNLRLYPDAALTVVMAAKGYPGSYSKGSVIEGLEDAAQTEAVEIFHAGTRKDGDHIVANGGRVLNVCARGNSVAQAQQRAYAAVDKIKWPDGFCRRDIGWQAIARER 375
            MSD LPAL+AARDGQLKNF+LR YPDAALTVVMAAKGYPG Y +G+ IEGL DA+Q E VEIFHAGT++DG  I ANGGRVLNV A G +V QAQ RAY AVD+I+WP+GFCRRDIGWQA+ARE+
Sbjct:  300 MSDFLPALIAARDGQLKNFDLRWYPDAALTVVMAAKGYPGDYKRGTTIEGLYDASQVEGVEIFHAGTKQDGQKITANGGRVLNVSALGKNVTQAQARAYQAVDRIQWPEGFCRRDIGWQAVAREK 424
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BLAST of mRNA_P-wetherbeei_contig58750.1.1 vs. uniprot
Match: UPI001BCEE716 (phosphoribosylamine--glycine ligase n=1 Tax=Bradyrhizobium sp. dw_411 TaxID=2720082 RepID=UPI001BCEE716)

HSP 1 Score: 202 bits (513), Expect = 4.020e-61
Identity = 93/125 (74.40%), Postives = 108/125 (86.40%), Query Frame = 1 
Query:    1 MSDLLPALMAARDGQLKNFNLRLYPDAALTVVMAAKGYPGSYSKGSVIEGLEDAAQTEAVEIFHAGTRKDGDHIVANGGRVLNVCARGNSVAQAQQRAYAAVDKIKWPDGFCRRDIGWQAIARER 375
            MSD++PAL+A+ DGQLKNF+LR + D ALTV+MA KGYPG Y KGSVIEGL+DAA  E VEIFHAGTR +G  I+ANGGRVLNVCA G +V +AQQRAY AVD+IKWPDGFCRRDIGWQA+ARE+
Sbjct:  300 MSDIVPALIASADGQLKNFSLRWFDDVALTVIMATKGYPGDYGKGSVIEGLDDAADVEGVEIFHAGTRAEGGKILANGGRVLNVCATGKTVTEAQQRAYQAVDRIKWPDGFCRRDIGWQAVAREK 424
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BLAST of mRNA_P-wetherbeei_contig58750.1.1 vs. uniprot
Match: A0A6L5FQ18_9HYPH (Phosphoribosylamine--glycine ligase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FQ18_9HYPH)

HSP 1 Score: 200 bits (508), Expect = 2.200e-60
Identity = 92/126 (73.02%), Postives = 112/126 (88.89%), Query Frame = 1 
Query:    1 MSDLLPALMAARDGQLKNFNLRLYPDAALTVVMAAKGYPGSYSKGSVIEGLEDAAQTEAVEIFHAGTRKDGDHIVANGGRVLNVCARGNSVAQAQQRAYAAVDKIKWPDGFCRRDIGWQAIARERK 378
            MSD+LPAL+AARDG LK+F+LR YP+ ALTVVMAAKGYPG Y +GSVIEGL +A+  E VEIFHAGT+ +G HI+ANGGRVLNVCA G++VA+AQ RAYAAVD+I+WPDGFCRRDIGW+A+ RE++
Sbjct:  300 MSDILPALIAARDGVLKSFDLRWYPEVALTVVMAAKGYPGHYERGSVIEGLAEASAIEGVEIFHAGTKAEGGHILANGGRVLNVCALGHTVAEAQARAYAAVDRIRWPDGFCRRDIGWRAVEREKE 425
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BLAST of mRNA_P-wetherbeei_contig58750.1.1 vs. uniprot
Match: UPI001BA4CC34 (phosphoribosylamine--glycine ligase n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BA4CC34)

HSP 1 Score: 199 bits (507), Expect = 2.950e-60
Identity = 96/124 (77.42%), Postives = 108/124 (87.10%), Query Frame = 1 
Query:    1 MSDLLPALMAARDGQLKNFNLRLYPDAALTVVMAAKGYPGSYSKGSVIEGLEDAAQTEAVEIFHAGTRKDGDHIVANGGRVLNVCARGNSVAQAQQRAYAAVDKIKWPDGFCRRDIGWQAIARE 372
            MSDL+PAL+AA DGQLK+F+LR YPDAALTVVMAAKGYPG Y+KG+VIEGL+ AA  + VEIFHAGTR DGD I+ANGGRVLNV ARG SV  AQ  AY AVD+I+WPDGFCRRDIGWQA+ARE
Sbjct:  300 MSDLVPALLAACDGQLKHFDLRWYPDAALTVVMAAKGYPGDYAKGTVIEGLDAAAAVDGVEIFHAGTRADGDRILANGGRVLNVTARGASVRAAQASAYQAVDRIRWPDGFCRRDIGWQAVARE 423
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BLAST of mRNA_P-wetherbeei_contig58750.1.1 vs. uniprot
Match: UPI001C0244AB (phosphoribosylamine--glycine ligase n=3 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001C0244AB)

HSP 1 Score: 199 bits (506), Expect = 4.480e-60
Identity = 92/125 (73.60%), Postives = 111/125 (88.80%), Query Frame = 1 
Query:    1 MSDLLPALMAARDGQLKNFNLRLYPDAALTVVMAAKGYPGSYSKGSVIEGLEDAAQTEAVEIFHAGTRKDGDHIVANGGRVLNVCARGNSVAQAQQRAYAAVDKIKWPDGFCRRDIGWQAIARER 375
            MSD++PA++A+ DGQLKNF+LR +PD ALTVVMAAKGYPG Y KGSVIEGL+DAA+ E VEIFHAGT+  G  I+A GGRVLNVCA G +V++AQQRAYAAVD+I+WP+GFCRRDIGWQA+ARE+
Sbjct:  300 MSDIVPAMLASCDGQLKNFDLRWFPDPALTVVMAAKGYPGDYGKGSVIEGLDDAAKIEGVEIFHAGTKAGGGKILAYGGRVLNVCASGKTVSEAQQRAYAAVDRIQWPEGFCRRDIGWQAVAREK 424
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BLAST of mRNA_P-wetherbeei_contig58750.1.1 vs. uniprot
Match: UPI00049767E7 (phosphoribosylamine--glycine ligase n=1 Tax=Bradyrhizobium sp. URHD0069 TaxID=1380355 RepID=UPI00049767E7)

HSP 1 Score: 197 bits (501), Expect = 2.500e-59
Identity = 92/126 (73.02%), Postives = 109/126 (86.51%), Query Frame = 1 
Query:    1 MSDLLPALMAARDGQLKNFNLRLYPDAALTVVMAAKGYPGSYSKGSVIEGLEDAAQTEAVEIFHAGTRKDGDHIVANGGRVLNVCARGNSVAQAQQRAYAAVDKIKWPDGFCRRDIGWQAIARERK 378
            MSD++PA++A+ DGQLKNF+LR +PDAALTVVMAA GYPG Y+KG+ IEGLEDAA  E VEIFHAGT     HI+ANGGRVLNVCA GNSV++AQ+RAY AVD+I+WP+GFCRRDIGWQA+  ERK
Sbjct:  300 MSDIVPAMLASCDGQLKNFDLRWFPDAALTVVMAASGYPGEYAKGTRIEGLEDAASVEGVEIFHAGTVSKDGHILANGGRVLNVCASGNSVSEAQRRAYEAVDRIRWPEGFCRRDIGWQAVDWERK 425
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BLAST of mRNA_P-wetherbeei_contig58750.1.1 vs. uniprot
Match: A0A533J6M8_9BRAD (Phosphoribosylamine--glycine ligase (Fragment) n=1 Tax=Bradyrhizobium icense TaxID=1274631 RepID=A0A533J6M8_9BRAD)

HSP 1 Score: 187 bits (475), Expect = 3.310e-59
Identity = 90/123 (73.17%), Postives = 105/123 (85.37%), Query Frame = 1 
Query:   10 LLPALMAARDGQLKNFNLRLYPDAALTVVMAAKGYPGSYSKGSVIEGLEDAAQTEAVEIFHAGT-RKDGDHIVANGGRVLNVCARGNSVAQAQQRAYAAVDKIKWPDGFCRRDIGWQAIARER 375
            ++PAL+A  DGQLKNF+LR Y DAA+TV+MA KGYPG Y KGSVIEGL++AA+ E VEIFHAGT RKDG  IVANGGRVLN+CA G +V +AQ+RAY AVD+I WP+GFCRRDIGWQAI RER
Sbjct:    1 IVPALIACADGQLKNFSLRWYDDAAITVIMATKGYPGDYGKGSVIEGLDEAAKVEGVEIFHAGTARKDG-RIVANGGRVLNICALGKTVTEAQKRAYEAVDRINWPEGFCRRDIGWQAIKRER 122
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BLAST of mRNA_P-wetherbeei_contig58750.1.1 vs. uniprot
Match: A0A346A2V2_9HYPH (Phosphoribosylamine--glycine ligase n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A346A2V2_9HYPH)

HSP 1 Score: 196 bits (497), Expect = 9.230e-59
Identity = 93/125 (74.40%), Postives = 106/125 (84.80%), Query Frame = 1 
Query:    1 MSDLLPALMAARDGQLKNFNLRLYPDAALTVVMAAKGYPGSYSKGSVIEGLEDAAQTEAVEIFHAGTRKDGDHIVANGGRVLNVCARGNSVAQAQQRAYAAVDKIKWPDGFCRRDIGWQAIARER 375
            MSD LPAL+AARDGQLK+F+LR Y DAALTVVMAA GYPG Y KGSVI GL+ AA  + VEIFHAGT+ DG HI+ANGGRVLNV ARG +V +AQ+RAYAAVD+I WP GFCRRDIGW+AI RE+
Sbjct:  300 MSDFLPALIAARDGQLKHFDLRWYDDAALTVVMAANGYPGPYEKGSVINGLDKAAAVDGVEIFHAGTKSDGTHILANGGRVLNVSARGKTVREAQERAYAAVDRIDWPQGFCRRDIGWRAITREQ 424
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58750.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0Q7TW13_9HYPH4.070e-6480.16Phosphoribosylamine--glycine ligase n=2 Tax=unclas... [more]
UPI0010BF027E1.460e-6378.40phosphoribosylamine--glycine ligase n=1 Tax=Pseudo... [more]
UPI001E2DF6853.920e-6176.00phosphoribosylamine--glycine ligase n=1 Tax=Leptos... [more]
UPI001BCEE7164.020e-6174.40phosphoribosylamine--glycine ligase n=1 Tax=Bradyr... [more]
A0A6L5FQ18_9HYPH2.200e-6073.02Phosphoribosylamine--glycine ligase n=1 Tax=Hyphom... [more]
UPI001BA4CC342.950e-6077.42phosphoribosylamine--glycine ligase n=1 Tax=unclas... [more]
UPI001C0244AB4.480e-6073.60phosphoribosylamine--glycine ligase n=3 Tax=unclas... [more]
UPI00049767E72.500e-5973.02phosphoribosylamine--glycine ligase n=1 Tax=Bradyr... [more]
A0A533J6M8_9BRAD3.310e-5973.17Phosphoribosylamine--glycine ligase (Fragment) n=1... [more]
A0A346A2V2_9HYPH9.230e-5974.40Phosphoribosylamine--glycine ligase n=1 Tax=Pseudo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58750contigP-wetherbeei_contig58750:55..435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1380355.JNIJ01000015_gene5863
Preferred namepurD
PFAMsGARS_A,GARS_C,GARS_N
Model size381
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00090,RC00166
KEGG koko:K01945
KEGG ReactionR04144
KEGG Pathwayko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130
KEGG ModuleM00048
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.1e-60
EggNOG OGsCOG0151@1|root,COG0151@2|Bacteria,1MUAH@1224|Proteobacteria,2TQR5@28211|Alphaproteobacteria,3JSI5@41294|Bradyrhizobiaceae
EC6.3.4.13
DescriptionBelongs to the GARS family
Cds size381
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186869.1531682-CDS-P-wetherbeei_contig58750:54..4351683186869.1531682-CDS-P-wetherbeei_contig58750:54..435Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58750 55..435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58750.1.1prot_P-wetherbeei_contig58750.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58750 55..435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58750.1.1

>prot_P-wetherbeei_contig58750.1.1 ID=prot_P-wetherbeei_contig58750.1.1|Name=mRNA_P-wetherbeei_contig58750.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
MSDLLPALMAARDGQLKNFNLRLYPDAALTVVMAAKGYPGSYSKGSVIEG
LEDAAQTEAVEIFHAGTRKDGDHIVANGGRVLNVCARGNSVAQAQQRAYA
AVDKIKWPDGFCRRDIGWQAIARERK*
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mRNA from alignment at P-wetherbeei_contig58750:55..435-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58750.1.1 ID=mRNA_P-wetherbeei_contig58750.1.1|Name=mRNA_P-wetherbeei_contig58750.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig58750:55..435- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGACCTGCTGCCGGCGCTGATGGCGGCGCGCGACGGGCAACTGAA
GAACTTCAATCTGCGCCTGTATCCCGATGCCGCGCTCACCGTGGTGATGG
CGGCGAAGGGTTACCCCGGCAGCTACAGCAAGGGGTCCGTAATCGAAGGT
CTCGAAGACGCCGCGCAGACCGAAGCCGTCGAGATCTTCCACGCCGGCAC
CAGGAAAGACGGCGATCACATTGTTGCGAACGGTGGCCGGGTGTTGAATG
TGTGCGCGCGCGGCAACAGCGTGGCGCAGGCGCAACAGCGCGCCTATGCG
GCCGTCGATAAAATAAAATGGCCGGATGGTTTTTGCCGCCGCGACATTGG
CTGGCAGGCGATCGCGCGCGAGCGAAAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58750:55..435-

>mRNA_P-wetherbeei_contig58750.1.1 ID=mRNA_P-wetherbeei_contig58750.1.1|Name=mRNA_P-wetherbeei_contig58750.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig58750:55..435- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGACCTGCTGCCGGCGCTGATGGCGGCGCGCGACGGGCAACTGAA
GAACTTCAATCTGCGCCTGTATCCCGATGCCGCGCTCACCGTGGTGATGG
CGGCGAAGGGTTACCCCGGCAGCTACAGCAAGGGGTCCGTAATCGAAGGT
CTCGAAGACGCCGCGCAGACCGAAGCCGTCGAGATCTTCCACGCCGGCAC
CAGGAAAGACGGCGATCACATTGTTGCGAACGGTGGCCGGGTGTTGAATG
TGTGCGCGCGCGGCAACAGCGTGGCGCAGGCGCAACAGCGCGCCTATGCG
GCCGTCGATAAAATAAAATGGCCGGATGGTTTTTGCCGCCGCGACATTGG
CTGGCAGGCGATCGCGCGCGAGCGAAAATGA
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