mRNA_P-wetherbeei_contig5875.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5875.1.1
Unique NamemRNA_P-wetherbeei_contig5875.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5875.1.1 vs. uniprot
Match: A0A835YW39_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW39_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.660e-39
Identity = 82/161 (50.93%), Postives = 112/161 (69.57%), Query Frame = 3 
Query:  288 EEPSTLSRLGSYVGTAWNLFVVGVTVTSVVLAVDSFQKLRTQPLTLDTLLPTIGNLLPLASLGYFSVLRLVGVVVRLLRIALTIPILAGGAYLMAPQLPSFLKDSPDVAAGSFFALLATPEVLEALAVLAIVASLLAWTIRTAVGVGSGLASWASPREETD 770
            ++PS L    + + +AW   ++ +T++S+VLA+D+  KL++QPLTLDTLLPT+GNLLPLA+ G   V+RLVGV VRL RIA+TIP++ GGAYL AP +P  LK SPD+A G   ALLATPEVLE LA+ A+V     W  +    + +G A+ A   E+ D
Sbjct:   14 QKPSLLQSTKNALQSAWKGLLLLITISSIVLAIDAIVKLKSQPLTLDTLLPTLGNLLPLAAFGVTGVVRLVGVFVRLARIAVTIPVVLGGAYLAAPSIPDLLKHSPDLATGGLVALLATPEVLEVLALCAVVGGAAIWLTQKLFTLVAGAAAAARDSEDAD 174
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BLAST of mRNA_P-wetherbeei_contig5875.1.1 vs. uniprot
Match: A0A836CM52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM52_9STRA)

HSP 1 Score: 145 bits (365), Expect = 5.390e-39
Identity = 79/162 (48.77%), Postives = 112/162 (69.14%), Query Frame = 3 
Query:  258 GKRAALKDNEEEPSTLSRLGSYVGTAWNLFVVGVTVTSVVLAVDSFQKLRTQPLTLDTLLPTIGNLLPLASLGYFSVLRLVGVVVRLLRIALTIPILAGGAYLMAPQLPSFLKDSPDVAAGSFFALLATPEVLEALAVLAIVASLLAWTIRTAVGVGSGLAS 743
            GK+     ++ + S+   +G  V +AWN  +V +TV SVVLAVD+  KL+TQP+TLDTL    GNLLPLA+ G     RLV V++RL+R+ +T+P++ GGAYL AP +P  LK SPD+A G  FA+LATPEVLEA+A++A++     W +R   G+ +G+AS
Sbjct:    8 GKKTKTASSDNDESSTRSIGEVVRSAWNGLLVALTVASVVLAVDAVVKLKTQPITLDTL----GNLLPLAAFGVAGAARLVAVLLRLVRVLVTVPVVLGGAYLAAPSIPDLLKHSPDLATGGLFAVLATPEVLEAIALIAVIVGAGIWIVRQLAGMVTGMAS 165
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BLAST of mRNA_P-wetherbeei_contig5875.1.1 vs. uniprot
Match: A0A7S2V4B2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4B2_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.780e-20
Identity = 52/123 (42.28%), Postives = 80/123 (65.04%), Query Frame = 3 
Query:  333 AWNLFVVGVTVTSVVLAVDSFQKLRTQPLTLDTLLPTIGNLLPLASLGYFSVLRLVGVVVRLLRIALTIPILAGGAYLMAPQLPSFLKDSPDVAAGSFFALLATPEVLEALAVLAIVASLLAW 701
            A+   +VGV + SV  A  +  KL T+P TL  L  T+ N+LP  + GYF  L+L+G  +RL+RI L++PI+ GG + +AP+LP F++ SPD+A+ S   + A PE++EA+ ++  V S L W
Sbjct:  133 AFGFLLVGVAIYSVYTAGTAVYKLYTEPFTLSNLGSTVTNVLPALTFGYFGTLKLIGAFMRLVRILLSVPIVVGGTWFLAPRLPEFIQSSPDLASTSLLGIFAVPEIVEAIILILFVGSFLFW 255
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BLAST of mRNA_P-wetherbeei_contig5875.1.1 vs. uniprot
Match: A0A6H5JGI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGI5_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 4.120e-19
Identity = 67/189 (35.45%), Postives = 100/189 (52.91%), Query Frame = 3 
Query:  219 EMMTKGAGKKGGMGKRAALKDNEEEPSTLSRLGSYVGTAWNLFVVGVTVTSVVLAVDSFQKLRTQPLTLDTLLPTIGNLLPLASLGYFSVLRLVGVVVRLLRIALTIPILAGGAYLMAPQLPSFLKDSPDVA-AGSFFALLATPEVLEALAVLAIVASLLAWTIRTAVGVGSGL--ASWASPREETDED 776
            E   +G GK+GG              S L + G+ +  A+N F+   T+ S+ LA ++  +L   PLTL   +PT+  LLPL  +G F   +LVG+V R++R+ +T+P++  G +++    P       D+  AGS  ALLATPEVLEA AV+A++     W +  A G    L      S REE +ED
Sbjct:  173 ETKNRGRGKEGGK-------------SVLEKAGNALKAAFNAFMAASTLASLALAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAPKLFPKGLDLTGAGSLAALLATPEVLEAAAVIALLGGTAIWALNFATGAVGALMPGQSKSSREEEEED 348
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BLAST of mRNA_P-wetherbeei_contig5875.1.1 vs. uniprot
Match: D7FYX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX7_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 6.830e-9
Identity = 39/122 (31.97%), Postives = 66/122 (54.10%), Query Frame = 3 
Query:  219 EMMTKGAGKKGGMGKRAALKDNEEEPSTLSRLGSYVGTAWNLFVVGVTVTSVVLAVDSFQKLRTQPLTLDTLLPTIGNLLPLASLGYFSVLRLVGVVVRLLRIALTIPILAGGAYLMAPQLP 584
            E   KG G++GG                L + G+ +  A+N F+   T+ S+VLA ++  +L   PLTL   +PT+  LLPL  +G F   +LVG+V R++R+ +T+P++  G +++    P
Sbjct:  174 ETKNKGGGEEGGK-------------PVLEKAGNALKAAFNAFMAASTLASLVLAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAP 282
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5875.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YW39_9STRA1.660e-3950.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CM52_9STRA5.390e-3948.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V4B2_9STRA1.780e-2042.28Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5JGI5_9PHAE4.120e-1935.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYX7_ECTSI6.830e-931.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5875contigP-wetherbeei_contig5875:537..1505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size969
Hectar predicted targeting categorychloroplast
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_002870.1
Cds size807
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186869.0502098-UTR-P-wetherbeei_contig5875:536..6871683186869.0502098-UTR-P-wetherbeei_contig5875:536..687Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5875 537..687 -
1683186869.0816827-UTR-P-wetherbeei_contig5875:1494..15051683186869.0816827-UTR-P-wetherbeei_contig5875:1494..1505Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5875 1495..1505 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186869.0711095-CDS-P-wetherbeei_contig5875:687..14941683186869.0711095-CDS-P-wetherbeei_contig5875:687..1494Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5875 688..1494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5875.1.1prot_P-wetherbeei_contig5875.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5875 688..1494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5875.1.1

>prot_P-wetherbeei_contig5875.1.1 ID=prot_P-wetherbeei_contig5875.1.1|Name=mRNA_P-wetherbeei_contig5875.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=269bp
MLALRYLKFSLVAQVLLLLAASAFRPPGVTISPPSEPSCFCSKSTWRSAP
GASALRPVRSRADGSMRGLEMMTKGAGKKGGMGKRAALKDNEEEPSTLSR
LGSYVGTAWNLFVVGVTVTSVVLAVDSFQKLRTQPLTLDTLLPTIGNLLP
LASLGYFSVLRLVGVVVRLLRIALTIPILAGGAYLMAPQLPSFLKDSPDV
AAGSFFALLATPEVLEALAVLAIVASLLAWTIRTAVGVGSGLASWASPRE
ETDEDNDSGDGDFEDNEE*
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mRNA from alignment at P-wetherbeei_contig5875:537..1505-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5875.1.1 ID=mRNA_P-wetherbeei_contig5875.1.1|Name=mRNA_P-wetherbeei_contig5875.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=969bp|location=Sequence derived from alignment at P-wetherbeei_contig5875:537..1505- (Phaeothamnion wetherbeei SAG_119_79)
CTGTGTGGGCGATGCTCGCCCTGCGGTACCTCAAGTTCTCTCTGGTCGCA
CAGGTCCTCCTGCTGCTGGCCGCTTCCGCCTTTCGGCCACCAGGGGTCAC
AATAAGCCCTCCTTCAGAACCATCATGTTTCTGCAGCAAATCGACGTGGC
GAAGCGCTCCCGGCGCCTCCGCCCTGCGCCCAGTACGGTCGAGAGCAGAT
GGATCGATGAGAGGGCTCGAAATGATGACAAAAGGCGCAGGGAAGAAGGG
CGGAATGGGGAAAAGGGCGGCGCTCAAGGATAACGAGGAGGAGCCGTCCA
CCCTCTCTCGCCTCGGAAGCTACGTGGGCACGGCGTGGAACCTGTTCGTT
GTCGGAGTTACCGTCACCTCCGTCGTGCTCGCCGTGGATTCTTTTCAGAA
GCTTCGGACGCAACCGCTCACGCTCGACACACTCCTCCCCACGATCGGCA
ACCTTCTGCCGCTGGCGTCGCTCGGCTACTTCTCCGTGCTGCGCCTCGTC
GGCGTCGTCGTGCGCCTTCTGCGGATCGCGCTGACCATCCCGATCCTCGC
CGGCGGCGCCTACCTGATGGCACCGCAGCTGCCGTCATTTCTCAAGGACT
CTCCGGACGTCGCCGCCGGTTCCTTCTTCGCGCTGCTGGCGACGCCGGAG
GTGCTGGAGGCGCTGGCGGTGCTGGCCATCGTGGCTTCGCTGCTGGCGTG
GACGATTCGAACAGCCGTCGGCGTCGGGAGCGGGCTGGCCAGCTGGGCGT
CGCCGAGGGAAGAGACTGACGAGGACAACGATAGCGGCGATGGCGATTTT
GAAGACAACGAGGAGTGATTTTGTTTTGGGGGGGGGGAGTTCGTCAGTGC
CGCCAGAATCTTGTGGAAGGAGAAGACTGGGAGGTGAAGGGGGTTGGAAG
AGAGGTAGAATAGCACAACACAAATCACAAAAAAATATTTAGCGCTCTGT
GACCGTGATTGGATCATAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5875:537..1505-

>mRNA_P-wetherbeei_contig5875.1.1 ID=mRNA_P-wetherbeei_contig5875.1.1|Name=mRNA_P-wetherbeei_contig5875.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=807bp|location=Sequence derived from alignment at P-wetherbeei_contig5875:537..1505- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGCCCTGCGGTACCTCAAGTTCTCTCTGGTCGCACAGGTCCTCCT
GCTGCTGGCCGCTTCCGCCTTTCGGCCACCAGGGGTCACAATAAGCCCTC
CTTCAGAACCATCATGTTTCTGCAGCAAATCGACGTGGCGAAGCGCTCCC
GGCGCCTCCGCCCTGCGCCCAGTACGGTCGAGAGCAGATGGATCGATGAG
AGGGCTCGAAATGATGACAAAAGGCGCAGGGAAGAAGGGCGGAATGGGGA
AAAGGGCGGCGCTCAAGGATAACGAGGAGGAGCCGTCCACCCTCTCTCGC
CTCGGAAGCTACGTGGGCACGGCGTGGAACCTGTTCGTTGTCGGAGTTAC
CGTCACCTCCGTCGTGCTCGCCGTGGATTCTTTTCAGAAGCTTCGGACGC
AACCGCTCACGCTCGACACACTCCTCCCCACGATCGGCAACCTTCTGCCG
CTGGCGTCGCTCGGCTACTTCTCCGTGCTGCGCCTCGTCGGCGTCGTCGT
GCGCCTTCTGCGGATCGCGCTGACCATCCCGATCCTCGCCGGCGGCGCCT
ACCTGATGGCACCGCAGCTGCCGTCATTTCTCAAGGACTCTCCGGACGTC
GCCGCCGGTTCCTTCTTCGCGCTGCTGGCGACGCCGGAGGTGCTGGAGGC
GCTGGCGGTGCTGGCCATCGTGGCTTCGCTGCTGGCGTGGACGATTCGAA
CAGCCGTCGGCGTCGGGAGCGGGCTGGCCAGCTGGGCGTCGCCGAGGGAA
GAGACTGACGAGGACAACGATAGCGGCGATGGCGATTTTGAAGACAACGA
GGAGTGA
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