mRNA_P-wetherbeei_contig58540.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58540.1.1
Unique NamemRNA_P-wetherbeei_contig58540.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58540.1.1 vs. uniprot
Match: A0A512J4B6_9HYPH (FAD_binding_3 domain-containing protein n=1 Tax=Methylobacterium oxalidis TaxID=944322 RepID=A0A512J4B6_9HYPH)

HSP 1 Score: 131 bits (329), Expect = 4.470e-34
Identity = 65/110 (59.09%), Postives = 79/110 (71.82%), Query Frame = 1 
Query:   16 FDVCIVGASIAGCVAAVALARAGLKVAVLERHAAEGAYKQLCTHYIQASATPTLRRLGLAERMEAAGAVRNLADIHTRWGWLNEPDMLDPSGAPLHGYSMTRSRLDPLIK 345
            +DV + GASIAGC AA+ LAR GL VA+LER    GAYK LCTHYIQ+ A P + RLGLA  +E AGAVRN  D+HTRWGW+ EPD    +  P HGY++ R  LDPL++
Sbjct:    4 YDVVVAGASIAGCTAAILLARRGLSVALLERSPQAGAYKPLCTHYIQSCALPVIERLGLAAPLEEAGAVRNAIDVHTRWGWVREPDA--DAAHPAHGYNVRRETLDPLLR 111
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BLAST of mRNA_P-wetherbeei_contig58540.1.1 vs. uniprot
Match: UPI001050FDA9 (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Methylobacterium segetis TaxID=2488750 RepID=UPI001050FDA9)

HSP 1 Score: 130 bits (328), Expect = 5.640e-34
Identity = 65/110 (59.09%), Postives = 81/110 (73.64%), Query Frame = 1 
Query:   16 FDVCIVGASIAGCVAAVALARAGLKVAVLERHAAEGAYKQLCTHYIQASATPTLRRLGLAERMEAAGAVRNLADIHTRWGWLNEPDMLDPSGAPLHGYSMTRSRLDPLIK 345
            +DV + GAS+AGC AA+ LAR GL VA+LER    GAYK+LCTHYIQ+SA P + RLGLA  +E AGAVRN  D+ TRWGW+ EP     SG P HGY++ R+ LDPL++
Sbjct:    4 YDVAVAGASVAGCSAAILLARQGLSVALLERSPDPGAYKKLCTHYIQSSALPVIERLGLAPLLEEAGAVRNAIDVRTRWGWVREPAA--ESGRPAHGYNVRRATLDPLLR 111
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BLAST of mRNA_P-wetherbeei_contig58540.1.1 vs. uniprot
Match: A0A523NRY9_9PROT (FAD-dependent oxidoreductase (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NRY9_9PROT)

HSP 1 Score: 119 bits (298), Expect = 7.640e-33
Identity = 55/89 (61.80%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:   16 FDVCIVGASIAGCVAAVALARAGLKVAVLERHAAEGAYKQLCTHYIQASATPTLRRLGLAERMEAAGAVRNLADIHTRWGWLNEPDMLD 282
            FDV ++G +IAGC AA+  AR GLKVA++ERH     +KQLCTH+IQ SAT T+RRLGLAE++EAAGA+RN  D+ T WGW++EP+M+D
Sbjct:    6 FDVAVIGGAIAGCTAAILFAREGLKVALVERHGTGAGFKQLCTHFIQPSATQTIRRLGLAEKIEAAGAIRNAVDMWTPWGWIDEPEMVD 94
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BLAST of mRNA_P-wetherbeei_contig58540.1.1 vs. uniprot
Match: A0A2U8WCB0_9HYPH (Monooxygenase n=1 Tax=Methylobacterium durans TaxID=2202825 RepID=A0A2U8WCB0_9HYPH)

HSP 1 Score: 126 bits (316), Expect = 2.990e-32
Identity = 64/110 (58.18%), Postives = 80/110 (72.73%), Query Frame = 1 
Query:   16 FDVCIVGASIAGCVAAVALARAGLKVAVLERHAAEGAYKQLCTHYIQASATPTLRRLGLAERMEAAGAVRNLADIHTRWGWLNEPDMLDPSGAPLHGYSMTRSRLDPLIK 345
            +DV + GAS+AGC  A+ LAR GL VA+LER    GA+K LCTHYIQ+SA P + RLGLA  +EAAGAV N  D+HTRWGW+ EP   DP+  P HGY++ R  LDPL++
Sbjct:    4 YDVVVAGASVAGCSTAILLARQGLSVALLERSPEAGAHKPLCTHYIQSSALPVIERLGLAPLLEAAGAVPNAIDVHTRWGWVREP-AADPAH-PAHGYNIRRETLDPLLR 111
[Close]
BLAST of mRNA_P-wetherbeei_contig58540.1.1 vs. uniprot
Match: A0A840ZI99_9HYPH (2-polyprenyl-6-methoxyphenol hydroxylase-like FAD-dependent oxidoreductase n=1 Tax=Methylorubrum rhodinum TaxID=29428 RepID=A0A840ZI99_9HYPH)

HSP 1 Score: 125 bits (315), Expect = 4.360e-32
Identity = 63/109 (57.80%), Postives = 79/109 (72.48%), Query Frame = 1 
Query:   19 DVCIVGASIAGCVAAVALARAGLKVAVLERHAAEGAYKQLCTHYIQASATPTLRRLGLAERMEAAGAVRNLADIHTRWGWLNEPDMLDPSGAPLHGYSMTRSRLDPLIK 345
            DV +VGAS+AGC AA+  AR+GL VA++ER     AYK+LCTHYIQ+SA P L RLGL   +EA G VRN  D+HTRWGW+ E +     G P HGY++ RSRLDPL++
Sbjct:    9 DVVVVGASVAGCAAAILFARSGLTVALVERDPDPAAYKRLCTHYIQSSALPVLERLGLDRAIEACGGVRNRLDLHTRWGWIREGEAAP--GHPGHGYNLRRSRLDPLLR 115
[Close]
BLAST of mRNA_P-wetherbeei_contig58540.1.1 vs. uniprot
Match: A0A4V2JFL6_9BURK (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Aquabacterium lacunae TaxID=2528630 RepID=A0A4V2JFL6_9BURK)

HSP 1 Score: 125 bits (315), Expect = 6.740e-32
Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 1 
Query:   16 FDVCIVGASIAGCVAAVALARAGLKVAVLERHAAEGAYKQLCTHYIQASATPTLRRLGLAERMEAAGAVRNLADIHTRWGWLNEPDMLDPSGAPLHGYSMTRSRLDPLIK 345
            FDV +VGAS+AGC  A+ LAR G +VA++ERHA    +KQLCTHYIQASA P L RLGL   +E AG V N+ ++HT  GW+ +     P G PLHGY++ R+RLDP+++
Sbjct:    6 FDVVVVGASLAGCATAILLARGGARVALIERHARHDTHKQLCTHYIQASAWPVLERLGLVPLIETAGGVPNIMELHTPHGWIADHPEHHPPGQPLHGYNIRRARLDPMVR 115
[Close]
BLAST of mRNA_P-wetherbeei_contig58540.1.1 vs. uniprot
Match: UPI001AEDBF31 (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Bradyrhizobium TaxID=374 RepID=UPI001AEDBF31)

HSP 1 Score: 120 bits (302), Expect = 5.540e-31
Identity = 62/110 (56.36%), Postives = 78/110 (70.91%), Query Frame = 1 
Query:   16 FDVCIVGASIAGCVAAVALARAGLKVAVLERHAAEGAYKQLCTHYIQASATPTLRRLGLAERMEAAGAVRNLADIHTRWGWLNEPDMLDPSGAPLHGYSMTRSRLDPLIK 345
            +DV IVGASIAGC AA+   RAG +VA++ER      YK+LCTHYIQASATPTL RLGLA  +E AG VRN A++ TRWGW+  P        P +GY++ RS LDP+++
Sbjct:    7 YDVAIVGASIAGCAAAIFFGRAGARVALIERDGDPAGYKKLCTHYIQASATPTLERLGLARAIEDAGGVRNDAEVFTRWGWIVAPSE-QTIRRPAYGYNIRRSTLDPMLR 115
[Close]
BLAST of mRNA_P-wetherbeei_contig58540.1.1 vs. uniprot
Match: A0A7I8BXA0_9BURK (FAD_binding_3 domain-containing protein n=1 Tax=Paraburkholderia sp. PGU16 TaxID=2735433 RepID=A0A7I8BXA0_9BURK)

HSP 1 Score: 118 bits (296), Expect = 2.280e-30
Identity = 64/117 (54.70%), Postives = 80/117 (68.38%), Query Frame = 1 
Query:    4 QTPI---FDVCIVGASIAGCVAAVALARAGLKVAVLERHAAEGAYKQLCTHYIQASATPTLRRLGLAERMEAAGAVRNLADIHTRWGWLNEPDMLDPSGAPLHGYSMTRSRLDPLIK 345
             TP+   FDV IVGA +AGC AA   A  GL VA++E HA   A+KQLCTH+IQASATPTLRRLGL + +E AG +RN  DI TR+GW      LD +G P  GY++ R  LDP+++
Sbjct:   15 DTPVDGTFDVAIVGAGLAGCTAARLFALEGLHVALVEHHADMTAFKQLCTHFIQASATPTLRRLGLDQLIEEAGGLRNGVDIWTRYGWTGNIAPLDANGQPAFGYNIRRRTLDPILR 131
[Close]
BLAST of mRNA_P-wetherbeei_contig58540.1.1 vs. uniprot
Match: UPI001F36E263 (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Paraburkholderia sp. HD33-4 TaxID=2883242 RepID=UPI001F36E263)

HSP 1 Score: 120 bits (302), Expect = 3.790e-30
Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 1 
Query:   16 FDVCIVGASIAGCVAAVALARAGLKVAVLERHAAEGAYKQLCTHYIQASATPTLRRLGLAERMEAAGAVRNLADIHTRWGWLNEPDMLDPSGAPLHGYSMTRSRLDPLIK 345
            FDV ++GA +AGC AA   A  GL+VA++E HA   ++KQLCTH+IQASATPTLRRLGL + +E AG VRN  DI TR+GW  +   LD SG P+ GY++ R  LDP+++
Sbjct:   22 FDVIVIGAGLAGCTAARLFALQGLRVALVEHHADMASFKQLCTHFIQASATPTLRRLGLDKLIEDAGGVRNGVDIWTRYGWTGDIAPLDASGQPVFGYNIQRRTLDPILR 131
[Close]
BLAST of mRNA_P-wetherbeei_contig58540.1.1 vs. uniprot
Match: A0A7Y4HAJ6_9BRAD (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Bradyrhizobium archetypum TaxID=2721160 RepID=A0A7Y4HAJ6_9BRAD)

HSP 1 Score: 120 bits (301), Expect = 4.440e-30
Identity = 62/112 (55.36%), Postives = 78/112 (69.64%), Query Frame = 1 
Query:   10 PIFDVCIVGASIAGCVAAVALARAGLKVAVLERHAAEGAYKQLCTHYIQASATPTLRRLGLAERMEAAGAVRNLADIHTRWGWLNEPDMLDPSGAPLHGYSMTRSRLDPLIK 345
            P +DV IVGASIAGC AA+   R G +VA++ER      YK+LCTHYIQASATPTL RLGLA  +E AG VRN A++ TRWGW+  P        P +GY++ RS LDP+++
Sbjct:    5 PQYDVAIVGASIAGCAAAIFFGRTGARVALIERDRDPAGYKRLCTHYIQASATPTLERLGLARAIEEAGGVRNDAEVFTRWGWIVAPSE-QTIRRPAYGYNIRRSTLDPMLR 115
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58540.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A512J4B6_9HYPH4.470e-3459.09FAD_binding_3 domain-containing protein n=1 Tax=Me... [more]
UPI001050FDA95.640e-3459.09NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Methyl... [more]
A0A523NRY9_9PROT7.640e-3361.80FAD-dependent oxidoreductase (Fragment) n=1 Tax=Pr... [more]
A0A2U8WCB0_9HYPH2.990e-3258.18Monooxygenase n=1 Tax=Methylobacterium durans TaxI... [more]
A0A840ZI99_9HYPH4.360e-3257.802-polyprenyl-6-methoxyphenol hydroxylase-like FAD-... [more]
A0A4V2JFL6_9BURK6.740e-3254.55NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Aquaba... [more]
UPI001AEDBF315.540e-3156.36NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Bradyr... [more]
A0A7I8BXA0_9BURK2.280e-3054.70FAD_binding_3 domain-containing protein n=1 Tax=Pa... [more]
UPI001F36E2633.790e-3055.45NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Parabu... [more]
A0A7Y4HAJ6_9BRAD4.440e-3055.36NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Bradyr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58540contigP-wetherbeei_contig58540:91..435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1229205.BUPH_01710
PFAMsFAD_binding_3
Model size345
Max annot lvl2|Bacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.68e-30
EggNOG OGsCOG0644@1|root,COG0644@2|Bacteria
Descriptiongeranylgeranyl reductase activity
Cds size345
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186866.7014203-CDS-P-wetherbeei_contig58540:90..4351683186866.7014203-CDS-P-wetherbeei_contig58540:90..435Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58540 91..435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58540.1.1prot_P-wetherbeei_contig58540.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58540 91..435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58540.1.1

>prot_P-wetherbeei_contig58540.1.1 ID=prot_P-wetherbeei_contig58540.1.1|Name=mRNA_P-wetherbeei_contig58540.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
MQTPIFDVCIVGASIAGCVAAVALARAGLKVAVLERHAAEGAYKQLCTHY
IQASATPTLRRLGLAERMEAAGAVRNLADIHTRWGWLNEPDMLDPSGAPL
HGYSMTRSRLDPLIK
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mRNA from alignment at P-wetherbeei_contig58540:91..435-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58540.1.1 ID=mRNA_P-wetherbeei_contig58540.1.1|Name=mRNA_P-wetherbeei_contig58540.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig58540:91..435- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAACACCGATATTCGACGTGTGTATCGTAGGAGCCAGCATTGCCGG
CTGCGTCGCTGCGGTAGCATTAGCGCGGGCCGGGCTCAAAGTTGCGGTAC
TTGAACGGCACGCCGCCGAGGGTGCGTACAAGCAGCTATGCACGCATTAC
ATCCAAGCCTCAGCGACGCCAACATTGCGCCGCCTTGGCTTGGCTGAGCG
CATGGAGGCCGCCGGTGCCGTGCGGAATCTGGCCGATATCCACACGCGTT
GGGGCTGGCTAAACGAGCCCGACATGCTCGACCCAAGCGGCGCGCCCCTG
CACGGCTACAGTATGACCCGCTCACGACTCGACCCCCTGATTAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58540:91..435-

>mRNA_P-wetherbeei_contig58540.1.1 ID=mRNA_P-wetherbeei_contig58540.1.1|Name=mRNA_P-wetherbeei_contig58540.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig58540:91..435- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAACACCGATATTCGACGTGTGTATCGTAGGAGCCAGCATTGCCGG
CTGCGTCGCTGCGGTAGCATTAGCGCGGGCCGGGCTCAAAGTTGCGGTAC
TTGAACGGCACGCCGCCGAGGGTGCGTACAAGCAGCTATGCACGCATTAC
ATCCAAGCCTCAGCGACGCCAACATTGCGCCGCCTTGGCTTGGCTGAGCG
CATGGAGGCCGCCGGTGCCGTGCGGAATCTGGCCGATATCCACACGCGTT
GGGGCTGGCTAAACGAGCCCGACATGCTCGACCCAAGCGGCGCGCCCCTG
CACGGCTACAGTATGACCCGCTCACGACTCGACCCCCTGATTAAG
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