mRNA_P-wetherbeei_contig58532.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58532.1.1
Unique NamemRNA_P-wetherbeei_contig58532.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58532.1.1 vs. uniprot
Match: A0A1M5DJH4_9HYPH (Uncharacterized protein n=1 Tax=Devosia limi DSM 17137 TaxID=1121477 RepID=A0A1M5DJH4_9HYPH)

HSP 1 Score: 57.8 bits (138), Expect = 1.140e-8
Identity = 29/49 (59.18%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    1 WVRRS---KPLPLEGRGWGGGVGGPTHIERVWAPTPPPLIPPLKGEGDD 138
            W+RR    +PLPLEG G GGG       ER     PPPLIPPLKGEGDD
Sbjct:   61 WMRRPNSRRPLPLEGEGQGGGAAVVARRERGERAEPPPLIPPLKGEGDD 109
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BLAST of mRNA_P-wetherbeei_contig58532.1.1 vs. uniprot
Match: A0A0T2NG60_9HYPH (Uncharacterized protein n=1 Tax=Devosia sp. Root635 TaxID=1736575 RepID=A0A0T2NG60_9HYPH)

HSP 1 Score: 45.4 bits (106), Expect = 3.610e-5
Identity = 22/43 (51.16%), Postives = 26/43 (60.47%), Query Frame = -1 
Query:   13 SVVSLPLEGRDQGWGCRGPHTLDMRWTSDTPTPTPPLKGEGLR 141
            S+ SLPLEGRD+GWG  G H         TP+P  P KGEG +
Sbjct:   11 SIASLPLEGRDRGWGSIGVHRT-------TPSPALPSKGEGAQ 46
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58532.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1M5DJH4_9HYPH1.140e-859.18Uncharacterized protein n=1 Tax=Devosia limi DSM 1... [more]
A0A0T2NG60_9HYPH3.610e-551.16Uncharacterized protein n=1 Tax=Devosia sp. Root63... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58532contigP-wetherbeei_contig58532:147..287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size141
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size141
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186866.6034837-CDS-P-wetherbeei_contig58532:146..2871683186866.6034837-CDS-P-wetherbeei_contig58532:146..287Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58532 147..287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58532.1.1prot_P-wetherbeei_contig58532.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58532 147..287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58532.1.1

>prot_P-wetherbeei_contig58532.1.1 ID=prot_P-wetherbeei_contig58532.1.1|Name=mRNA_P-wetherbeei_contig58532.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=47bp
WVRRSKPLPLEGRGWGGGVGGPTHIERVWAPTPPPLIPPLKGEGDD*
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mRNA from alignment at P-wetherbeei_contig58532:147..287-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58532.1.1 ID=mRNA_P-wetherbeei_contig58532.1.1|Name=mRNA_P-wetherbeei_contig58532.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=141bp|location=Sequence derived from alignment at P-wetherbeei_contig58532:147..287- (Phaeothamnion wetherbeei SAG_119_79)
TGGGTGCGCCGATCTAAGCCCCTCCCCCTTGAGGGGAGGGGTTGGGGTGG
GGGTGTCGGAGGTCCAACGCATATCGAGCGTGTGTGGGCCCCGACACCCC
CACCCTTGATCCCTCCCCTCAAGGGGGAGGGAGACGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58532:147..287-

>mRNA_P-wetherbeei_contig58532.1.1 ID=mRNA_P-wetherbeei_contig58532.1.1|Name=mRNA_P-wetherbeei_contig58532.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=141bp|location=Sequence derived from alignment at P-wetherbeei_contig58532:147..287- (Phaeothamnion wetherbeei SAG_119_79)
TGGGTGCGCCGATCTAAGCCCCTCCCCCTTGAGGGGAGGGGTTGGGGTGG
GGGTGTCGGAGGTCCAACGCATATCGAGCGTGTGTGGGCCCCGACACCCC
CACCCTTGATCCCTCCCCTCAAGGGGGAGGGAGACGACTGA
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