mRNA_P-wetherbeei_contig58396.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58396.1.1
Unique NamemRNA_P-wetherbeei_contig58396.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58396.1.1 vs. uniprot
Match: UPI0015F46056 (redoxin domain-containing protein n=1 Tax=Nitrosopumilus sp. b1 TaxID=2109907 RepID=UPI0015F46056)

HSP 1 Score: 135 bits (339), Expect = 9.160e-35
Identity = 74/163 (45.40%), Postives = 104/163 (63.80%), Query Frame = 1
Query:    1 RSGQVVRQWPGDIQEHLPDLRTAVASALAASGEVDTGSLPA--LTTVGFAAAFGAGMLSVLSPCVLPLLPTYAAYITGVSVDEM--VRQQGDAQRRRRVTTLRNGLLFMLGFSLVFIALGASASVFGSWLYDWRIWLARIGGVILLAMGVHMLGLVRIPWLDR 477
            R G+VV +W G  +    D +  V  AL   G +    +    +  +GFA AF AG+LS LSPCVLPL+P YA+++TG SV EM  V  QG  Q   R   L+ GLLF+LGFS++F+A+GAS +  GS+  D   W+ARIGG+I++  G+H+LG+++IP L R
Sbjct:  134 RQGEVVYEWRGAFEPMSEDTKHKVNIAL---GNIKNDLIEEDQIAAIGFALAFSAGLLSFLSPCVLPLIPAYASFLTGTSVKEMENVNAQGQNQVHYRYNALKRGLLFVLGFSVIFVAIGASTAFVGSFFTDASEWIARIGGIIVIIFGLHILGILKIPILSR 293          
BLAST of mRNA_P-wetherbeei_contig58396.1.1 vs. uniprot
Match: A0A060HK32_9ARCH (Disulfide bond oxidoreductase D family protein n=1 Tax=Nitrososphaera viennensis EN76 TaxID=926571 RepID=A0A060HK32_9ARCH)

HSP 1 Score: 129 bits (324), Expect = 2.300e-32
Identity = 75/178 (42.13%), Postives = 108/178 (60.67%), Query Frame = 1
Query:    1 RSGQVVRQWPGDIQEHLPDLRTAVASALAASGEV---DTGSLPA--------LTTVGFAAAFGAGMLSVLSPCVLPLLPTYAAYITGVSVDEMV---RQQGDAQRRRRVTTLRN-----GLLFMLGFSLVFIALGASASVFGSWLYDWRIWLARIGGVILLAMGVHMLGLVRIPWLDR 477
            + G V+ QW G       D R+ V +AL  S  V   D    PA          TV    AF AG+LS LSPCVLPL+P+YAA+ITG+S+D++    R +  +   ++  T RN     G LF+LGFS+VF+ALGA+ S FG +  D+ +W+ RIGG++L+  G+H+LGL+RIP +++
Sbjct:  153 KDGYVLHQWKGAFDPMSEDTRSRVQAALTMSSIVVGKDGKPAPAGGAAAAIEAPTVSAGVAFSAGLLSFLSPCVLPLIPSYAAFITGMSMDQLTGNARSENASSSSQQTRTARNTIIARGGLFVLGFSIVFVALGATISTFGFFFGDYAVWIGRIGGIMLMVFGLHLLGLLRIPGVEK 330          
BLAST of mRNA_P-wetherbeei_contig58396.1.1 vs. uniprot
Match: A0A2V7KMP5_9BACT (Cytochrome C biogenesis protein (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7KMP5_9BACT)

HSP 1 Score: 118 bits (295), Expect = 4.610e-31
Identity = 63/123 (51.22%), Postives = 87/123 (70.73%), Query Frame = 1
Query:  133 VGFAAAFGAGMLSVLSPCVLPLLPTYAAYITGVSVDEMVRQQGDAQRRRRVTTLRNGLLFMLGFSLVFIALGASASVFGSWLYDWRIWLARIGGVILLAMGVHMLGLVRIPWLDRTSRPMLDR 501
            VG A AF AG+LS LSPCVLPL+P+Y  Y+TG+SV+E+         RRR T + +GL F+ GFSLVF+ LGA+AS  G+ L D+++WL R+GGV+L+  GV++LG++R  +L R  R  L R
Sbjct:    3 VGVAVAFAAGLLSFLSPCVLPLIPSYIGYLTGMSVEEV--------ERRRGTAVLHGLWFVAGFSLVFVLLGAAASAVGNLLRDYQVWLGRVGGVLLILFGVYLLGILRPAFLMREWRIELAR 117          
BLAST of mRNA_P-wetherbeei_contig58396.1.1 vs. uniprot
Match: A0A838NUU4_9BACT (Cytochrome c biogenesis protein CcdA n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=A0A838NUU4_9BACT)

HSP 1 Score: 119 bits (297), Expect = 3.990e-30
Identity = 58/121 (47.93%), Postives = 87/121 (71.90%), Query Frame = 1
Query:  133 VGFAAAFGAGMLSVLSPCVLPLLPTYAAYITGVSVDEMVRQQGDAQRRRRVTTLRNGLLFMLGFSLVFIALGASASVFGSWLYDWRIWLARIGGVILLAMGVHMLGLVRIPWLDRTSRPML 495
            +GF  AFGAG+LS LSPCVLPL+P+Y  ++TG+SV+       D +R R+ TTL +  LF+LGF+ +F+ALGA+A++ G  +  WR W++RIGGV+++  G++MLG+ R+ +L R  R  L
Sbjct:    5 LGFGVAFGAGLLSFLSPCVLPLIPSYITFLTGLSVE-------DVERGRKTTTLIHASLFILGFTAIFLALGATATMLGQMMLAWRDWISRIGGVLIILFGLYMLGVFRMAFLGRERRVYL 118          
BLAST of mRNA_P-wetherbeei_contig58396.1.1 vs. uniprot
Match: A0A842P481_9ARCH (Redoxin domain-containing protein n=1 Tax=Nitrosopumilus sp. TaxID=2024843 RepID=A0A842P481_9ARCH)

HSP 1 Score: 122 bits (307), Expect = 4.290e-30
Identity = 63/162 (38.89%), Postives = 103/162 (63.58%), Query Frame = 1
Query:    1 RSGQVVRQWPGDIQEHLPDLRTAVASALAASGEVDTGSLPALTT---VGFAAAFGAGMLSVLSPCVLPLLPTYAAYITGVSVDEMVRQQGDAQRRRRVTTLRNGLLFMLGFSLVFIALGASASVFGSWLYDWRIWLARIGGVILLAMGVHMLGLVRIPWLDR 477
            + G ++ QW G  +    D    V SAL         S   L +   +    AFGAG+LS LSPCVLPL+P YA+++TG+SV ++  +   ++ +  +T ++ GL+F+LGFS++FI LG+S    GS L D  +W+ RIGG++L+ +G+H++G+++IPWL++
Sbjct:  146 KDGMILHQWKGAFEPMSQDTILRVNSALNDMPFEQVNSENLLDSDFRLSLIIAFGAGLLSFLSPCVLPLIPVYASFLTGLSVQDLSAKSKTSKSKFGIT-MKRGLMFVLGFSVIFIILGSSVGYAGSVLLDAVVWIERIGGIVLIVLGLHLIGILKIPWLEK 306          
BLAST of mRNA_P-wetherbeei_contig58396.1.1 vs. uniprot
Match: A0A3M6JX34_9ARCH (Thioredoxin domain-containing protein n=1 Tax=Candidatus Nitrosomarinus sp. TaxID=2478979 RepID=A0A3M6JX34_9ARCH)

HSP 1 Score: 122 bits (306), Expect = 6.060e-30
Identity = 66/165 (40.00%), Postives = 98/165 (59.39%), Query Frame = 1
Query:    7 GQVVRQWPGDIQEHLPDLRTAVASALAASGEVDTGSLPALTT----VGFAAAFGAGMLSVLSPCVLPLLPTYAAYITGVSVDEMVRQQGDAQRRR-RVTTLRNGLLFMLGFSLVFIALGASASVFGSWLYDWRIWLARIGGVILLAMGVHMLGLVRIPWLDRTSR 486
            GQ++  W G+      D    V S +   G     S P + T     GF  AF AG+LS LSPCVLPL+P YA+ ITG+S  E+ ++     R + R+T    G++F++GFS++F+ LG + S  G+  +D   W+ RIGGV+L+ +G+HM+GL +IP L+R  R
Sbjct:  150 GQIIYHWKGEFDPVSEDTINLVQSTI--MGTSYQSSEPTILTDGLVAGFVIAFSAGVLSFLSPCVLPLIPVYASLITGMSAKELSQETSQVTRSKLRLTATGKGIMFVIGFSIIFMLLGTTVSFMGNLFFDSIQWIERIGGVVLIVLGLHMIGLFKIPKLERQMR 312          
BLAST of mRNA_P-wetherbeei_contig58396.1.1 vs. uniprot
Match: A0RTN3_CENSY (Cytochrome c biogenesis protein n=1 Tax=Cenarchaeum symbiosum (strain A) TaxID=414004 RepID=A0RTN3_CENSY)

HSP 1 Score: 120 bits (300), Expect = 2.290e-29
Identity = 71/169 (42.01%), Postives = 105/169 (62.13%), Query Frame = 1
Query:    7 GQVVRQWPGDIQEHLPDLRTAVAS-ALAASGEVDTGS--LPALTTVGFAAAFGAGMLSVLSPCVLPLLPTYAAYITGVSVDEM----VRQQGDAQRRRRVTT--LRNGLLFMLGFSLVFIALGASASVFGSWLYDWRIWLARIGGVILLAMGVHMLGLVRIPWLDRTSR 486
            G +++QW G I+  +    T  A+  +A +G +++GS  +     +G A AF AG+LS LSPCVLPL+P YA +ITG+S+ E+        G AQ R RV T  L  G LF+LGFS+VF++LG + S   S L+D  +W+ RIGG+ ++  G+H+LG+ RI  L+   R
Sbjct:   87 GSIIQQWKGPIEPGMGVEETIEAALGIAPAGVIESGSVGISEAEVIGLAVAFSAGLLSFLSPCVLPLVPAYATFITGMSLKELSSGRTNTGGGAQSRLRVRTVALTRGSLFVLGFSVVFVSLGIAVSYVSS-LFDAAMWIERIGGIAIIIFGLHLLGVFRIRRLNMEKR 254          
BLAST of mRNA_P-wetherbeei_contig58396.1.1 vs. uniprot
Match: A0A0R2NRN3_9ARCH (Thioredoxin domain-containing protein n=7 Tax=Nitrosopumilaceae TaxID=338190 RepID=A0A0R2NRN3_9ARCH)

HSP 1 Score: 120 bits (300), Expect = 4.410e-29
Identity = 64/165 (38.79%), Postives = 99/165 (60.00%), Query Frame = 1
Query:    7 GQVVRQWPGDIQEHLPDLRTAVASALAASGEVDTGSLPALTT----VGFAAAFGAGMLSVLSPCVLPLLPTYAAYITGVSVDEMVRQQGDAQRRR-RVTTLRNGLLFMLGFSLVFIALGASASVFGSWLYDWRIWLARIGGVILLAMGVHMLGLVRIPWLDRTSR 486
            GQ++ QW G       D    V + +   G     S P + +     GF  AF AG+LS LSPCVLPL+P YA+ ITG+S  E+ ++   A R + R+T    G++F++GFS++F+ LG + S  G+  +D   W+ RIGGV+L+ +G+HM+G+ +IP L++  R
Sbjct:  150 GQIIHQWKGAFDPVSDDTINLVEATI--QGTSYQSSEPTILSDGLIAGFVIAFSAGVLSFLSPCVLPLIPVYASLITGMSAKELSQETSQATRSKLRLTATVKGIMFVIGFSIIFMLLGTTVSFMGNLFFDSIQWIERIGGVVLIVLGLHMIGVFKIPRLEKQMR 312          
BLAST of mRNA_P-wetherbeei_contig58396.1.1 vs. uniprot
Match: UPI001930DBB4 (redoxin family protein n=1 Tax=Solirubrobacter sp. CPCC 204708 TaxID=2282478 RepID=UPI001930DBB4)

HSP 1 Score: 120 bits (300), Expect = 4.520e-29
Identity = 76/175 (43.43%), Postives = 104/175 (59.43%), Query Frame = 1
Query:    1 RSGQVVRQWPGDIQEHLPDLRTAVASALAASG--------EVDTGSLPALTTVGFAAAFGAGMLSVLSPCVLPLLPTYAAYITGVSVDEMVRQQGDAQRRRRVTTLRNGLLFMLGFSLVFIALGASASVFGSWLYDWRIWLARIGGVILLAMGVHMLGLVRIPWLDRTSRPMLDR 501
            ++G VVR+WPG + E    +  A+  A+A+SG        E    S  +   VG  AA  AG+LS LSPCVLPL+P+Y A + GV       +   A+R  R  TL + + F+LGFS VFIALGASA+  G  L  +  W+ RIGGV+L+A GV +LGL+ +  L R +R +LDR
Sbjct:  142 KNGVVVRRWPGALTEDDTTIDAAIERAIASSGAYVKRADTETKEASAISFGVVGALAAVIAGLLSFLSPCVLPLVPSYVALLAGV-------RGAGAKRASRRETLTHAVAFVLGFSAVFIALGASATALGDALRGYDEWITRIGGVLLIAFGVMLLGLIPLAILQRDTR-LLDR 308          
BLAST of mRNA_P-wetherbeei_contig58396.1.1 vs. uniprot
Match: A0A2W4SEX8_9BACT (Cytochrome C biogenesis protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A2W4SEX8_9BACT)

HSP 1 Score: 116 bits (290), Expect = 5.200e-29
Identity = 61/123 (49.59%), Postives = 88/123 (71.54%), Query Frame = 1
Query:  130 TVGFAAAFGAGMLSVLSPCVLPLLPTYAAYITGVSVDEMVRQQGDAQRRRRVTTLRNGLLFMLGFSLVFIALGASASVFGSWLYDWRIWLARIGGVILLAMGVHMLGLVRIPWLDRTSRPMLD 498
            ++GFA AF AG+LS LSPCVLPL+P+YA++ITG+ +D++     D    RR   L +GLLF+ GF+LVFIALGASA++ GS  + +R W+ R GGV+L+  G+ +LG++R+P  +R  R  L 
Sbjct:    5 SLGFAVAFTAGLLSFLSPCVLPLIPSYASFITGIGLDDLADGGRDRAHVRRAL-LAHGLLFIAGFTLVFIALGASATLIGSIFHVYRDWIERTGGVLLVLFGLLLLGVLRVPGAERDWRIQLS 126          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58396.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0015F460569.160e-3545.40redoxin domain-containing protein n=1 Tax=Nitrosop... [more]
A0A060HK32_9ARCH2.300e-3242.13Disulfide bond oxidoreductase D family protein n=1... [more]
A0A2V7KMP5_9BACT4.610e-3151.22Cytochrome C biogenesis protein (Fragment) n=1 Tax... [more]
A0A838NUU4_9BACT3.990e-3047.93Cytochrome c biogenesis protein CcdA n=1 Tax=Gemma... [more]
A0A842P481_9ARCH4.290e-3038.89Redoxin domain-containing protein n=1 Tax=Nitrosop... [more]
A0A3M6JX34_9ARCH6.060e-3040.00Thioredoxin domain-containing protein n=1 Tax=Cand... [more]
A0RTN3_CENSY2.290e-2942.01Cytochrome c biogenesis protein n=1 Tax=Cenarchaeu... [more]
A0A0R2NRN3_9ARCH4.410e-2938.79Thioredoxin domain-containing protein n=7 Tax=Nitr... [more]
UPI001930DBB44.520e-2943.43redoxin family protein n=1 Tax=Solirubrobacter sp.... [more]
A0A2W4SEX8_9BACT5.200e-2949.59Cytochrome C biogenesis protein n=1 Tax=bacterium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58396contigP-wetherbeei_contig58396:2..502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog379066.GAU_0930
PFAMsDsbD
Model size501
Max annot lvl142182|Gemmatimonadetes
KEGG koko:K06196
KEGG TC5.A.1.2
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.24e-28
EggNOG OGsCOG0785@1|root,COG0785@2|Bacteria,1ZTJC@142182|Gemmatimonadetes
DescriptionCytochrome C biogenesis protein transmembrane region
Cds size501
COG categoryO
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186864.8799665-CDS-P-wetherbeei_contig58396:1..5021683186864.8799665-CDS-P-wetherbeei_contig58396:1..502Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58396 2..502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58396.1.1prot_P-wetherbeei_contig58396.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58396 2..502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58396.1.1

>prot_P-wetherbeei_contig58396.1.1 ID=prot_P-wetherbeei_contig58396.1.1|Name=mRNA_P-wetherbeei_contig58396.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
RSGQVVRQWPGDIQEHLPDLRTAVASALAASGEVDTGSLPALTTVGFAAA
FGAGMLSVLSPCVLPLLPTYAAYITGVSVDEMVRQQGDAQRRRRVTTLRN
GLLFMLGFSLVFIALGASASVFGSWLYDWRIWLARIGGVILLAMGVHMLG
LVRIPWLDRTSRPMLDR
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mRNA from alignment at P-wetherbeei_contig58396:2..502+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58396.1.1 ID=mRNA_P-wetherbeei_contig58396.1.1|Name=mRNA_P-wetherbeei_contig58396.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig58396:2..502+ (Phaeothamnion wetherbeei SAG_119_79)
CGCAGCGGCCAGGTCGTCCGCCAGTGGCCGGGCGACATCCAGGAGCACCT GCCCGACCTGCGGACGGCGGTCGCCAGCGCGCTCGCCGCCTCCGGCGAGG TCGATACCGGGTCGTTGCCCGCCCTGACGACGGTCGGGTTCGCGGCCGCC TTCGGGGCGGGGATGCTCAGCGTGCTCTCGCCGTGCGTCCTGCCCCTGTT GCCGACCTACGCCGCCTACATCACCGGTGTCAGCGTCGACGAGATGGTGC GCCAGCAGGGCGATGCCCAGCGGCGCCGCCGCGTGACCACCCTGCGGAAC GGGCTGCTCTTCATGCTGGGGTTCAGCCTCGTCTTCATCGCGCTGGGGGC CTCGGCCTCGGTCTTCGGATCGTGGCTGTACGACTGGCGGATCTGGCTGG CGCGGATCGGCGGCGTCATCCTGCTGGCGATGGGCGTTCACATGCTCGGC CTCGTCCGCATCCCCTGGCTGGACCGCACGAGCCGGCCGATGCTGGACCG C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58396:2..502+

>mRNA_P-wetherbeei_contig58396.1.1 ID=mRNA_P-wetherbeei_contig58396.1.1|Name=mRNA_P-wetherbeei_contig58396.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig58396:2..502+ (Phaeothamnion wetherbeei SAG_119_79)
CGCAGCGGCCAGGTCGTCCGCCAGTGGCCGGGCGACATCCAGGAGCACCT
GCCCGACCTGCGGACGGCGGTCGCCAGCGCGCTCGCCGCCTCCGGCGAGG
TCGATACCGGGTCGTTGCCCGCCCTGACGACGGTCGGGTTCGCGGCCGCC
TTCGGGGCGGGGATGCTCAGCGTGCTCTCGCCGTGCGTCCTGCCCCTGTT
GCCGACCTACGCCGCCTACATCACCGGTGTCAGCGTCGACGAGATGGTGC
GCCAGCAGGGCGATGCCCAGCGGCGCCGCCGCGTGACCACCCTGCGGAAC
GGGCTGCTCTTCATGCTGGGGTTCAGCCTCGTCTTCATCGCGCTGGGGGC
CTCGGCCTCGGTCTTCGGATCGTGGCTGTACGACTGGCGGATCTGGCTGG
CGCGGATCGGCGGCGTCATCCTGCTGGCGATGGGCGTTCACATGCTCGGC
CTCGTCCGCATCCCCTGGCTGGACCGCACGAGCCGGCCGATGCTGGACCG
C
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