mRNA_P-wetherbeei_contig58387.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58387.1.1
Unique NamemRNA_P-wetherbeei_contig58387.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58387.1.1 vs. uniprot
Match: UPI001C3CA2C6 (aminotransferase class IV n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3CA2C6)

HSP 1 Score: 107 bits (267), Expect = 1.880e-26
Identity = 58/91 (63.74%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    7 VVWLNGTLVDPSAAVLSIDDPGVRWGEGLFETMRAEGGRVALLERHLDRLTRSAQALGLAPMPERAAMRAAVAAALAAGPVAPRRVRLSAT 279
            VVWL+G LVDP+AA L I DPGVRWGEGLFETMR  GGRV LLERHL R+  SA+ALG+ P+P R  +  AVA A+AA      RVRL  T
Sbjct:   20 VVWLDGALVDPAAAALPIADPGVRWGEGLFETMRGAGGRVPLLERHLRRMEGSARALGIGPLPGRGTLERAVAEAVAAAGGGDLRVRLRVT 110          
BLAST of mRNA_P-wetherbeei_contig58387.1.1 vs. uniprot
Match: UPI001C3C9745 (aminotransferase class IV n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3C9745)

HSP 1 Score: 92.4 bits (228), Expect = 7.880e-21
Identity = 47/63 (74.60%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 MRVVWLNGTLVDPSAAVLSIDDPGVRWGEGLFETMRAEGGRVALLERHLDRLTRSAQALGLAP 189
            MRVVWL+G LV P  A LSIDDPGVRWGEGLFETMRA  GRV L +RHL RL  SA ALGL+P
Sbjct:    1 MRVVWLDGGLVAPGDAHLSIDDPGVRWGEGLFETMRAVDGRVPLRDRHLARLEASAAALGLSP 63          
BLAST of mRNA_P-wetherbeei_contig58387.1.1 vs. uniprot
Match: A0A2X0K8K1_9ACTN (4-amino-4-deoxychorismate lyase n=3 Tax=Streptacidiphilus TaxID=228398 RepID=A0A2X0K8K1_9ACTN)

HSP 1 Score: 83.6 bits (205), Expect = 2.280e-17
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 1
Query:   10 VWLNGTLVDPSAAVLSIDDPGVRWGEGLFETMRAEGGRVALLERHLDRLTRSAQALGLAPMPERAAMRAAVAAALAAGPVAPRRVRLSATPG 285
            +W+NG L DP+ A +S+ D G+  G+G+FET++A  GR   L+RHLDRL RSA+ LGL P P+RA +  A AA L A PVA  R+R++ T G
Sbjct:    3 IWVNGALADPADATVSVLDHGMTVGDGVFETVKAVEGRPFALQRHLDRLDRSARGLGL-PAPDRAEVERACAAVLEANPVALGRLRITYTGG 93          
BLAST of mRNA_P-wetherbeei_contig58387.1.1 vs. uniprot
Match: UPI0015FC5AAA (aminotransferase class IV n=1 Tax=Streptacidiphilus sp. P02-A3a TaxID=2704468 RepID=UPI0015FC5AAA)

HSP 1 Score: 82.4 bits (202), Expect = 6.960e-17
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   10 VWLNGTLVDPSAAVLSIDDPGVRWGEGLFETMRAEGGRVALLERHLDRLTRSAQALGLAPMPERAAMRAAVAAALAAGPVAPRRVRLSATPG 285
            +W+NG L +P+ A +S+ D G   G+G+FET++  GGR   LE HLDRL RSA+ALGL P P+R  +RAA A  LAA PV   R+R++ T G
Sbjct:    3 IWVNGALREPADATVSVLDRGFTVGDGVFETVKVVGGRTFALELHLDRLERSARALGL-PRPDRELVRAACADVLAAEPVPLGRLRITCTSG 93          
BLAST of mRNA_P-wetherbeei_contig58387.1.1 vs. uniprot
Match: A0A1H5PK74_9ACTN (Branched-chain amino acid aminotransferase n=1 Tax=Streptomyces sp. Ag109_O5-10 TaxID=1855349 RepID=A0A1H5PK74_9ACTN)

HSP 1 Score: 78.6 bits (192), Expect = 1.770e-15
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   10 VWLNGTLVDPSAAVLSIDDPGVRWGEGLFETMRAEGGRVALLERHLDRLTRSAQALGLAPMPERAAMRAAVAAALAAGPVAPRRVRLSATPG 285
            +WL+G L D  +A +S+ D G+  G+G+FET++A GGR   L RHLDRLTRSA+ LGL P P+   +R A AA LAA P+   R+R++ T G
Sbjct:    3 IWLDGGLQDVESARVSVFDHGLTVGDGIFETVKATGGRPFALTRHLDRLTRSARGLGL-PDPDHDEVRRACAAVLAANPMELGRLRITYTGG 93          
BLAST of mRNA_P-wetherbeei_contig58387.1.1 vs. uniprot
Match: A0A372JQ06_9ACTN (4-amino-4-deoxychorismate lyase n=1 Tax=Actinomadura logoneensis TaxID=2293572 RepID=A0A372JQ06_9ACTN)

HSP 1 Score: 78.6 bits (192), Expect = 1.900e-15
Identity = 49/93 (52.69%), Postives = 62/93 (66.67%), Query Frame = 1
Query:   10 VWLNGTLVDPSAAVLSIDDPGVRWGEGLFETMRAEGGRVALLERHLDRLTRSAQALGLAPMPERAAMRAAVAAALAAGPVAP-RRVRLSATPG 285
            VW+NGTL+DP  AV+S+ D GV  G+G+FET++A  G    L RHL RL+RSA  LGL P P+ AA+ A V  ALA  P  P  RVR++ T G
Sbjct:    8 VWVNGTLLDPDEAVVSVFDHGVLVGDGVFETVKAVDGEPFALTRHLARLSRSAAGLGL-PAPDEAALAAGVRDALATAPDWPLARVRVTYTSG 99          
BLAST of mRNA_P-wetherbeei_contig58387.1.1 vs. uniprot
Match: A0A7Y8X2I0_9ACTN (Aminodeoxychorismate lyase n=2 Tax=Streptomyces sp. BR123 TaxID=2749828 RepID=A0A7Y8X2I0_9ACTN)

HSP 1 Score: 77.8 bits (190), Expect = 3.480e-15
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   10 VWLNGTLVDPSAAVLSIDDPGVRWGEGLFETMRAEGGRVALLERHLDRLTRSAQALGLAPMPERAAMRAAVAAALAAGPVAPRRVRLSATPG 285
            +WL+G L D  +A +S+ D G+  G+G+FET++AEGGRV  L RH++RLTRSA+ LGL P P+   +R A  A L A P+   R+R++ T G
Sbjct:    3 IWLDGALRDAESARVSVFDHGLTVGDGVFETLKAEGGRVFALTRHVERLTRSARGLGL-PDPDPEELRRACEAVLGANPMRLGRLRITYTGG 93          
BLAST of mRNA_P-wetherbeei_contig58387.1.1 vs. uniprot
Match: A0A1Q5MM46_9ACTN (Class IV aminotransferase n=1 Tax=Streptomyces sp. CB00455 TaxID=1703927 RepID=A0A1Q5MM46_9ACTN)

HSP 1 Score: 77.4 bits (189), Expect = 4.800e-15
Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 1
Query:   10 VWLNGTLVDPSAAVLSIDDPGVRWGEGLFETMRAEGGRVALLERHLDRLTRSAQALGLAPMPERAAMRAAVAAALAAGPVAPRRVRLSATPG 285
            +WL+G L D   A +S+ D G+  G+G+FET++AEGGR   L RHLDRLTRSA+ LGL P P+   +R A AA L A P+   R+R++ T G
Sbjct:    3 IWLDGALRDVDDARVSVFDHGLTVGDGVFETLKAEGGRPFALTRHLDRLTRSARGLGL-PDPDHDEVRRACAAVLEANPMPFGRLRVTYTGG 93          
BLAST of mRNA_P-wetherbeei_contig58387.1.1 vs. uniprot
Match: UPI00167F1889 (aminodeoxychorismate lyase n=2 Tax=Kitasatospora TaxID=2063 RepID=UPI00167F1889)

HSP 1 Score: 77.0 bits (188), Expect = 6.530e-15
Identity = 43/93 (46.24%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    7 VVWLNGTLVDPSAAVLSIDDPGVRWGEGLFETMRAEGGRVALLERHLDRLTRSAQALGLAPMPERAAMRAAVAAALAAGPVAPRRVRLSATPG 285
            ++W+NG+LVD  AA +S+ D G+  G+G+FET++AE GR+  L RHL+RL RSA+ LGL P P++  +R A    +AA P+   R+R++ T G
Sbjct:    1 MIWVNGSLVDNDAATVSVLDHGLTVGDGVFETVKAEDGRLFALTRHLERLARSARGLGL-PDPDQDLVREACEQVVAANPMPLGRLRVTYTGG 92          
BLAST of mRNA_P-wetherbeei_contig58387.1.1 vs. uniprot
Match: A0A387HR36_9ACTN (Branched-chain-amino-acid aminotransferase n=8 Tax=Streptomyces TaxID=1883 RepID=A0A387HR36_9ACTN)

HSP 1 Score: 77.0 bits (188), Expect = 6.690e-15
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   10 VWLNGTLVDPSAAVLSIDDPGVRWGEGLFETMRAEGGRVALLERHLDRLTRSAQALGLAPMPERAAMRAAVAAALAAGPVAPRRVRLSATPG 285
            +W+NG L D  AA +S+ D G+  G+G+FET++A GGR+  L RHLDRLTRSA+ LGLA  P+   +R A AA + A P+   R+R++ T G
Sbjct:    3 IWVNGALRDADAARVSVLDHGLTVGDGVFETVKATGGRLFALTRHLDRLTRSARGLGLAD-PDLDEVRRACAAVVEANPMPLGRLRITYTGG 93          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58387.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3CA2C61.880e-2663.74aminotransferase class IV n=1 Tax=Miltoncostaea ma... [more]
UPI001C3C97457.880e-2174.60aminotransferase class IV n=1 Tax=Miltoncostaea oc... [more]
A0A2X0K8K1_9ACTN2.280e-1751.094-amino-4-deoxychorismate lyase n=3 Tax=Streptacid... [more]
UPI0015FC5AAA6.960e-1751.09aminotransferase class IV n=1 Tax=Streptacidiphilu... [more]
A0A1H5PK74_9ACTN1.770e-1550.00Branched-chain amino acid aminotransferase n=1 Tax... [more]
A0A372JQ06_9ACTN1.900e-1552.694-amino-4-deoxychorismate lyase n=1 Tax=Actinomadu... [more]
A0A7Y8X2I0_9ACTN3.480e-1547.83Aminodeoxychorismate lyase n=2 Tax=Streptomyces sp... [more]
A0A1Q5MM46_9ACTN4.800e-1550.00Class IV aminotransferase n=1 Tax=Streptomyces sp.... [more]
UPI00167F18896.530e-1546.24aminodeoxychorismate lyase n=2 Tax=Kitasatospora T... [more]
A0A387HR36_9ACTN6.690e-1548.91Branched-chain-amino-acid aminotransferase n=8 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58387contigP-wetherbeei_contig58387:51..335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog235985.BBPN01000027_gene1537
PFAMsAminotran_4
Model size285
Max annot lvl201174|Actinobacteria
KEGG rclassRC00006,RC00036
KEGG koko:K00826
KEGG ReactionR01090,R01214,R02199,R10991
KEGG Pathwayko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00019,M00036,M00119,M00570
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.43e-17
EggNOG OGsCOG0115@1|root,COG0115@2|Bacteria,2GN5Z@201174|Actinobacteria,2NEB8@228398|Streptacidiphilus
EC2.6.1.42
DescriptionAmino-transferase class IV
Cds size285
COG categoryEH
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186864.677765-CDS-P-wetherbeei_contig58387:50..3351683186864.677765-CDS-P-wetherbeei_contig58387:50..335Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58387 51..335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58387.1.1prot_P-wetherbeei_contig58387.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58387 51..335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58387.1.1

>prot_P-wetherbeei_contig58387.1.1 ID=prot_P-wetherbeei_contig58387.1.1|Name=mRNA_P-wetherbeei_contig58387.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
MRVVWLNGTLVDPSAAVLSIDDPGVRWGEGLFETMRAEGGRVALLERHLD
RLTRSAQALGLAPMPERAAMRAAVAAALAAGPVAPRRVRLSATPG
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mRNA from alignment at P-wetherbeei_contig58387:51..335-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58387.1.1 ID=mRNA_P-wetherbeei_contig58387.1.1|Name=mRNA_P-wetherbeei_contig58387.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig58387:51..335- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGGTCGTGTGGCTGAACGGGACCCTCGTCGATCCGTCTGCCGCCGT GCTGTCGATCGACGATCCCGGCGTGCGCTGGGGCGAGGGTCTGTTCGAGA CGATGCGCGCCGAGGGCGGGCGGGTCGCGCTGTTGGAGCGCCACCTCGAC CGTCTGACCCGGTCGGCGCAGGCACTCGGCCTGGCCCCCATGCCGGAGCG GGCGGCGATGCGGGCCGCGGTGGCCGCCGCCCTCGCGGCCGGTCCGGTGG CCCCCCGCAGGGTGCGGCTGAGTGCCACCCCCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58387:51..335-

>mRNA_P-wetherbeei_contig58387.1.1 ID=mRNA_P-wetherbeei_contig58387.1.1|Name=mRNA_P-wetherbeei_contig58387.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig58387:51..335- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGGTCGTGTGGCTGAACGGGACCCTCGTCGATCCGTCTGCCGCCGT
GCTGTCGATCGACGATCCCGGCGTGCGCTGGGGCGAGGGTCTGTTCGAGA
CGATGCGCGCCGAGGGCGGGCGGGTCGCGCTGTTGGAGCGCCACCTCGAC
CGTCTGACCCGGTCGGCGCAGGCACTCGGCCTGGCCCCCATGCCGGAGCG
GGCGGCGATGCGGGCCGCGGTGGCCGCCGCCCTCGCGGCCGGTCCGGTGG
CCCCCCGCAGGGTGCGGCTGAGTGCCACCCCCGGC
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