mRNA_P-wetherbeei_contig58128.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58128.1.1
Unique NamemRNA_P-wetherbeei_contig58128.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58128.1.1 vs. uniprot
Match: A0A0Q0C3C4_PSEAJ (Uncharacterized protein n=6 Tax=cellular organisms TaxID=131567 RepID=A0A0Q0C3C4_PSEAJ)

HSP 1 Score: 53.1 bits (126), Expect = 4.070e-5
Identity = 38/108 (35.19%), Postives = 50/108 (46.30%), Query Frame = 1 
Query:    1 FDYDNARSEIERALRTIDGRCILDEFESLLRCRANQDGNVLDK-WRILKRSLPDAFT---WPLDLYGGGFFTAVDMYLSARSGRPVGWNYQSLIQTAHRCMDIRPDFL 312
            +DYD  R+EIER+L   D   +   F       A  D    D  W  L+  +  A      P+D   G F  A+ + LSAR GRPVG+N   L+  A+   D   DFL
Sbjct:  285 YDYDAQRAEIERSL---DKSLVRQAFYDFWNQHAANDCRETDAAWVTLREKMRIAMPRLHLPVDHRTGKFHGAISIMLSARFGRPVGYNLPRLLNVANTAFDHYKDFL 389
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58128.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0Q0C3C4_PSEAJ4.070e-535.19Uncharacterized protein n=6 Tax=cellular organisms... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58128contigP-wetherbeei_contig58128:2..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1150626.PHAMO_360008
Model size504
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000349
EggNOG OGsCOG4469@1|root,COG4469@2|Bacteria,1REWY@1224|Proteobacteria,2UFP3@28211|Alphaproteobacteria
DescriptionCompetence protein
Cds size504
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186861.409353-CDS-P-wetherbeei_contig58128:1..5051683186861.409353-CDS-P-wetherbeei_contig58128:1..505Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58128 2..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58128.1.1prot_P-wetherbeei_contig58128.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58128 2..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58128.1.1

>prot_P-wetherbeei_contig58128.1.1 ID=prot_P-wetherbeei_contig58128.1.1|Name=mRNA_P-wetherbeei_contig58128.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
FDYDNARSEIERALRTIDGRCILDEFESLLRCRANQDGNVLDKWRILKRS
LPDAFTWPLDLYGGGFFTAVDMYLSARSGRPVGWNYQSLIQTAHRCMDIR
PDFLPLLEACFSAFGRSSIFTDERYAAKWSAKRAKAVVDATAKSDTRTHL
LRLRQYRPAMEWLMPEVK
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mRNA from alignment at P-wetherbeei_contig58128:2..505-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58128.1.1 ID=mRNA_P-wetherbeei_contig58128.1.1|Name=mRNA_P-wetherbeei_contig58128.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig58128:2..505- (Phaeothamnion wetherbeei SAG_119_79)
TTCGACTATGACAATGCGCGGTCCGAGATCGAACGAGCGCTGCGGACAAT
TGATGGCAGGTGCATCCTCGATGAATTCGAGTCCCTGTTGCGATGTAGAG
CCAACCAAGACGGAAATGTGCTGGACAAATGGCGAATACTGAAACGCTCT
CTACCGGACGCGTTCACCTGGCCGCTCGATCTGTATGGCGGAGGCTTTTT
CACTGCAGTGGACATGTACCTCTCCGCGCGCTCGGGGCGCCCGGTCGGAT
GGAATTATCAAAGCCTGATCCAGACCGCACATCGCTGCATGGATATCCGC
CCAGATTTTCTGCCGTTACTCGAAGCCTGCTTCAGCGCCTTCGGGCGCAG
CAGCATCTTTACCGACGAACGCTATGCCGCAAAGTGGAGCGCAAAACGTG
CGAAAGCGGTAGTTGATGCAACTGCTAAATCTGATACCAGGACCCACCTG
CTTCGGCTTCGCCAATATCGGCCGGCCATGGAATGGCTAATGCCCGAGGT
CAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58128:2..505-

>mRNA_P-wetherbeei_contig58128.1.1 ID=mRNA_P-wetherbeei_contig58128.1.1|Name=mRNA_P-wetherbeei_contig58128.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig58128:2..505- (Phaeothamnion wetherbeei SAG_119_79)
TTCGACTATGACAATGCGCGGTCCGAGATCGAACGAGCGCTGCGGACAAT
TGATGGCAGGTGCATCCTCGATGAATTCGAGTCCCTGTTGCGATGTAGAG
CCAACCAAGACGGAAATGTGCTGGACAAATGGCGAATACTGAAACGCTCT
CTACCGGACGCGTTCACCTGGCCGCTCGATCTGTATGGCGGAGGCTTTTT
CACTGCAGTGGACATGTACCTCTCCGCGCGCTCGGGGCGCCCGGTCGGAT
GGAATTATCAAAGCCTGATCCAGACCGCACATCGCTGCATGGATATCCGC
CCAGATTTTCTGCCGTTACTCGAAGCCTGCTTCAGCGCCTTCGGGCGCAG
CAGCATCTTTACCGACGAACGCTATGCCGCAAAGTGGAGCGCAAAACGTG
CGAAAGCGGTAGTTGATGCAACTGCTAAATCTGATACCAGGACCCACCTG
CTTCGGCTTCGCCAATATCGGCCGGCCATGGAATGGCTAATGCCCGAGGT
CAAG
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