mRNA_P-wetherbeei_contig58110.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58110.1.1
Unique NamemRNA_P-wetherbeei_contig58110.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58110.1.1 vs. uniprot
Match: A0A3D5DF94_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DF94_9GAMM)

HSP 1 Score: 78.2 bits (191), Expect = 2.070e-16
Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    7 MAERFFSDTELREMEKLTLDRLTDAIDAGDADKAKKIAKRMYNEFLAM 150
            M +RFFSD ELREME+ T+DRL DAID+GDADKAKK+AKRMYNEFL+M
Sbjct:    1 MGDRFFSDAELREMERRTVDRLVDAIDSGDADKAKKLAKRMYNEFLSM 48          
BLAST of mRNA_P-wetherbeei_contig58110.1.1 vs. uniprot
Match: A0A523NW61_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NW61_9PROT)

HSP 1 Score: 77.0 bits (188), Expect = 5.930e-16
Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    7 MAERFFSDTELREMEKLTLDRLTDAIDAGDADKAKKIAKRMYNEFLAM 150
            M ERFFSD ELREME+ T+DRLTDAIDAG+ +KAKKIA+RMYNEFL+M
Sbjct:    1 MTERFFSDDELREMERRTVDRLTDAIDAGETEKAKKIARRMYNEFLSM 48          
BLAST of mRNA_P-wetherbeei_contig58110.1.1 vs. uniprot
Match: A0A534SEQ9_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534SEQ9_9DELT)

HSP 1 Score: 67.4 bits (163), Expect = 2.740e-12
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = 1
Query:    7 MAERFFSDTELREMEKLTLDRLTDAIDAGDADKAKKIAKRMYNEFLAM 150
            M E+ FS+ E+REMEK T+DRL +AIDAGD +KAK+IA+RMYNEFL+M
Sbjct:    1 MHEQLFSEAEIREMEKRTVDRLIEAIDAGDPEKAKQIARRMYNEFLSM 48          
BLAST of mRNA_P-wetherbeei_contig58110.1.1 vs. uniprot
Match: A0A7Y4X2V8_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7Y4X2V8_9DELT)

HSP 1 Score: 63.2 bits (152), Expect = 1.110e-10
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 1
Query:    7 MAERFFSDTELREMEKLTLDRLTDAIDAGDADKAKKIAKRMYNEFLAM 150
            M +R FS +E+ EM+K T+DRL +AIDAGD +KAKKI +RM+NEFL+M
Sbjct:    1 MQDRLFSQSEIEEMQKRTVDRLVEAIDAGDKEKAKKIGQRMFNEFLSM 48          
BLAST of mRNA_P-wetherbeei_contig58110.1.1 vs. uniprot
Match: A0A1Z8WVT4_9GAMM (Uncharacterized protein n=1 Tax=Methylococcaceae bacterium TMED69 TaxID=1986766 RepID=A0A1Z8WVT4_9GAMM)

HSP 1 Score: 58.9 bits (141), Expect = 4.190e-9
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:    1 RTMAERFFSDTELREMEKLTLDRLTDAIDAGDADKAKKIAKRMYNEFLAM 150
            R+  ++FF+  E+ EMEK T+DR+ +AID GD +KAKK+  RMYNEFL+M
Sbjct:    2 RSNEDQFFNSNEISEMEKRTVDRIVEAIDNGDYEKAKKLTHRMYNEFLSM 51          
BLAST of mRNA_P-wetherbeei_contig58110.1.1 vs. uniprot
Match: W4M3S5_9BACT (Uncharacterized protein n=1 Tax=Candidatus Entotheonella gemina TaxID=1429439 RepID=W4M3S5_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 6.110e-9
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1
Query:    7 MAERFFSDTELREMEKLTLDRLTDAIDAGDADKAKKIAKRMYNEFLAM 150
            M  R F+  EL EMEK T+DRLT+AI+AGD + AK+IA+RMYNEF +M
Sbjct:    1 METRLFTKEELAEMEKRTVDRLTEAIEAGDTEVAKRIAQRMYNEFESM 48          
BLAST of mRNA_P-wetherbeei_contig58110.1.1 vs. uniprot
Match: UPI000B7D96C2 (hypothetical protein n=1 Tax=Candidatus Entotheonella palauensis TaxID=93172 RepID=UPI000B7D96C2)

HSP 1 Score: 58.2 bits (139), Expect = 8.500e-9
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 1
Query:    7 MAERFFSDTELREMEKLTLDRLTDAIDAGDADKAKKIAKRMYNEFLAM 150
            M  + F++ EL EM K T+DRLT+AI+AGD + AK+IA+RMYNEF++M
Sbjct:    1 MENQLFTEDELAEMGKRTVDRLTEAIEAGDTESAKRIAQRMYNEFVSM 48          
BLAST of mRNA_P-wetherbeei_contig58110.1.1 vs. uniprot
Match: A0A2E2BC59_9GAMM (Uncharacterized protein n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A2E2BC59_9GAMM)

HSP 1 Score: 53.9 bits (128), Expect = 3.130e-7
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 1
Query:    7 MAERFFSDTELREMEKLTLDRLTDAIDAGDADKAKKIAKRMYNEFLAM 150
            M ++ F++ ELREMEK TLDRL +AI   D++ AKKIA RM  EFL+M
Sbjct:    1 MKDKIFTENELREMEKRTLDRLLEAIXQDDSEXAKKIANRMXXEFLSM 48          
BLAST of mRNA_P-wetherbeei_contig58110.1.1 vs. uniprot
Match: A0A7V2RF83_9CHLR (Uncharacterized protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7V2RF83_9CHLR)

HSP 1 Score: 50.8 bits (120), Expect = 4.050e-6
Identity = 25/43 (58.14%), Postives = 35/43 (81.40%), Query Frame = 1
Query:   13 ERFFSDTELREMEKLTLDRLTDAIDAGDADKAKKIAKRMYNEF 141
            +R+F+D EL+EM + TLD L +AIDAG  +KAK++A+RMY EF
Sbjct:    4 QRYFTDEELKEMGRRTLDVLIEAIDAGYKEKAKELAQRMYKEF 46          
BLAST of mRNA_P-wetherbeei_contig58110.1.1 vs. uniprot
Match: A0A353VC11_9BACT (Uncharacterized protein n=2 Tax=unclassified Candidatus Rokubacteria TaxID=2760815 RepID=A0A353VC11_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 1.370e-5
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 1
Query:    7 MAERFFSDTELREMEKLTLDRLTDAIDAGDADKAKKIAKRMYNEFLAM 150
            MA+R F+D ELR +   TLD L  AIDAGDA  AK +A+RMY EF  M
Sbjct:    1 MADRVFTDEELRALGARTLDLLEAAIDAGDAAGAKALARRMYGEFGGM 48          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58110.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A3D5DF94_9GAMM2.070e-1679.17Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A523NW61_9PROT5.930e-1679.17Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A534SEQ9_9DELT2.740e-1268.75Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A7Y4X2V8_9DELT1.110e-1062.50Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A1Z8WVT4_9GAMM4.190e-956.00Uncharacterized protein n=1 Tax=Methylococcaceae b... [more]
W4M3S5_9BACT6.110e-962.50Uncharacterized protein n=1 Tax=Candidatus Entothe... [more]
UPI000B7D96C28.500e-958.33hypothetical protein n=1 Tax=Candidatus Entotheone... [more]
A0A2E2BC59_9GAMM3.130e-758.33Uncharacterized protein n=1 Tax=Thiotrichales bact... [more]
A0A7V2RF83_9CHLR4.050e-658.14Uncharacterized protein n=1 Tax=Dehalococcoidia ba... [more]
A0A353VC11_9BACT1.370e-558.33Uncharacterized protein n=2 Tax=unclassified Candi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58110contigP-wetherbeei_contig58110:4..153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size150
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186861.1979876-CDS-P-wetherbeei_contig58110:3..1471683186861.1979876-CDS-P-wetherbeei_contig58110:3..147Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58110 4..147 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186861.2068264-UTR-P-wetherbeei_contig58110:147..1531683186861.2068264-UTR-P-wetherbeei_contig58110:147..153Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58110 148..153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58110.1.1prot_P-wetherbeei_contig58110.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58110 4..147 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58110.1.1

>prot_P-wetherbeei_contig58110.1.1 ID=prot_P-wetherbeei_contig58110.1.1|Name=mRNA_P-wetherbeei_contig58110.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=48bp
MAERFFSDTELREMEKLTLDRLTDAIDAGDADKAKKIAKRMYNEFLAM
back to top

mRNA from alignment at P-wetherbeei_contig58110:4..153-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58110.1.1 ID=mRNA_P-wetherbeei_contig58110.1.1|Name=mRNA_P-wetherbeei_contig58110.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=150bp|location=Sequence derived from alignment at P-wetherbeei_contig58110:4..153- (Phaeothamnion wetherbeei SAG_119_79)
CGAACCATGGCCGAAAGATTCTTTTCAGATACCGAACTGCGCGAGATGGA AAAGCTCACGCTTGACCGCCTGACCGATGCGATAGACGCCGGCGACGCCG ACAAGGCCAAGAAGATCGCCAAGCGCATGTATAACGAATTCCTCGCGATG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig58110:4..153-

>mRNA_P-wetherbeei_contig58110.1.1 ID=mRNA_P-wetherbeei_contig58110.1.1|Name=mRNA_P-wetherbeei_contig58110.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig58110:4..153- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGAAAGATTCTTTTCAGATACCGAACTGCGCGAGATGGAAAAGCT
CACGCTTGACCGCCTGACCGATGCGATAGACGCCGGCGACGCCGACAAGG
CCAAGAAGATCGCCAAGCGCATGTATAACGAATTCCTCGCGATG
back to top