mRNA_P-wetherbeei_contig58069.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58069.1.1
Unique NamemRNA_P-wetherbeei_contig58069.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58069.1.1 vs. uniprot
Match: A0A1E3EEF5_BRAEL (Colicin V biosynthesis protein n=51 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1E3EEF5_BRAEL)

HSP 1 Score: 117 bits (294), Expect = 1.090e-31
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 MPITILDLVLLGVMLISGLLAMVRGFMREILSIAAWGAAALVTLYAFSKLLPTAKTYFNNDTVAA 195
            MPITILDLVLLGVMLISGLLAMVRGFMREILSIAAWGAAALVTLYAFSKLLPTAKTYFNNDTVAA
Sbjct:    1 MPITILDLVLLGVMLISGLLAMVRGFMREILSIAAWGAAALVTLYAFSKLLPTAKTYFNNDTVAA 65
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BLAST of mRNA_P-wetherbeei_contig58069.1.1 vs. uniprot
Match: A0A533J2M7_9BRAD (CvpA family protein (Fragment) n=1 Tax=Bradyrhizobium icense TaxID=1274631 RepID=A0A533J2M7_9BRAD)

HSP 1 Score: 114 bits (284), Expect = 1.140e-31
Identity = 60/65 (92.31%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 MPITILDLVLLGVMLISGLLAMVRGFMREILSIAAWGAAALVTLYAFSKLLPTAKTYFNNDTVAA 195
            MPITILDLVLLGVML+SGLLAMVRGFMREILSIAAWGAAA+VTLY+F+KLLPTAKTYFNNDT+AA
Sbjct:    1 MPITILDLVLLGVMLVSGLLAMVRGFMREILSIAAWGAAAIVTLYSFNKLLPTAKTYFNNDTIAA 65
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BLAST of mRNA_P-wetherbeei_contig58069.1.1 vs. uniprot
Match: A0A1B1UIK5_9BRAD (Colicin V synthesis protein n=21 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1B1UIK5_9BRAD)

HSP 1 Score: 115 bits (289), Expect = 5.900e-31
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:    1 MPITILDLVLLGVMLISGLLAMVRGFMREILSIAAWGAAALVTLYAFSKLLPTAKTYFNNDTVAA 195
            MPITILDLVLLGVMLISGLLAMVRGFMREILSIAAWGAAALVTLYAFSKLLPTAK YFNNDTVAA
Sbjct:    1 MPITILDLVLLGVMLISGLLAMVRGFMREILSIAAWGAAALVTLYAFSKLLPTAKAYFNNDTVAA 65
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BLAST of mRNA_P-wetherbeei_contig58069.1.1 vs. uniprot
Match: A4YT51_BRASO (Putative Colicin V production protein, cvpA-like (DedE protein) (Pur regulon 18 kDa protein) n=4 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A4YT51_BRASO)

HSP 1 Score: 114 bits (286), Expect = 1.630e-30
Identity = 61/65 (93.85%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 MPITILDLVLLGVMLISGLLAMVRGFMREILSIAAWGAAALVTLYAFSKLLPTAKTYFNNDTVAA 195
            MPITILDL+LLGVMLISGLLAMVRGFMRE+LSIAAWGAAALVTLY+FSKLLPTAKTYFNNDTVA+
Sbjct:    1 MPITILDLILLGVMLISGLLAMVRGFMREVLSIAAWGAAALVTLYSFSKLLPTAKTYFNNDTVAS 65
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BLAST of mRNA_P-wetherbeei_contig58069.1.1 vs. uniprot
Match: M4ZV42_9BRAD (Colicin V production protein, CvpA-like protein n=11 Tax=Alphaproteobacteria TaxID=28211 RepID=M4ZV42_9BRAD)

HSP 1 Score: 114 bits (285), Expect = 2.310e-30
Identity = 60/65 (92.31%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 MPITILDLVLLGVMLISGLLAMVRGFMREILSIAAWGAAALVTLYAFSKLLPTAKTYFNNDTVAA 195
            MPITILDL+LLGVML+SGLLAMVRGFMRE+LSIAAWGAAALVTLY+FSKLLPTAKTYFNNDTVA+
Sbjct:    1 MPITILDLILLGVMLVSGLLAMVRGFMREVLSIAAWGAAALVTLYSFSKLLPTAKTYFNNDTVAS 65
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BLAST of mRNA_P-wetherbeei_contig58069.1.1 vs. uniprot
Match: A0A0A3XQE6_BRAJP (Colicin V synthesis protein n=135 Tax=Hyphomicrobiales TaxID=356 RepID=A0A0A3XQE6_BRAJP)

HSP 1 Score: 113 bits (282), Expect = 6.700e-30
Identity = 59/65 (90.77%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 MPITILDLVLLGVMLISGLLAMVRGFMREILSIAAWGAAALVTLYAFSKLLPTAKTYFNNDTVAA 195
            MP+T+LDL+LLGVMLISGLLAMVRGFMREILSIAAWGAAA+VTLY+FSKLLPTAKTYFNNDTVA+
Sbjct:    1 MPVTLLDLILLGVMLISGLLAMVRGFMREILSIAAWGAAAIVTLYSFSKLLPTAKTYFNNDTVAS 65
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BLAST of mRNA_P-wetherbeei_contig58069.1.1 vs. uniprot
Match: UPI0004667770 (CvpA family protein n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI0004667770)

HSP 1 Score: 113 bits (282), Expect = 6.700e-30
Identity = 61/65 (93.85%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 MPITILDLVLLGVMLISGLLAMVRGFMREILSIAAWGAAALVTLYAFSKLLPTAKTYFNNDTVAA 195
            MPITILDL+LLGVMLISGLLAMVRGFMREILSIAAWGAAA+VTLY+FSKLLPTAKTYF+NDTVAA
Sbjct:    1 MPITILDLILLGVMLISGLLAMVRGFMREILSIAAWGAAAVVTLYSFSKLLPTAKTYFSNDTVAA 65
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BLAST of mRNA_P-wetherbeei_contig58069.1.1 vs. uniprot
Match: UPI00112644E7 (CvpA family protein n=1 Tax=Bradyrhizobium guangdongense TaxID=1325090 RepID=UPI00112644E7)

HSP 1 Score: 112 bits (281), Expect = 9.480e-30
Identity = 59/65 (90.77%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 MPITILDLVLLGVMLISGLLAMVRGFMREILSIAAWGAAALVTLYAFSKLLPTAKTYFNNDTVAA 195
            MPITILDL+LLGVML+SGLLA+VRGFMREILSIAAWGAAA+VTLY+FSKLLPTAKTYFNNDTVA+
Sbjct:    1 MPITILDLILLGVMLVSGLLALVRGFMREILSIAAWGAAAIVTLYSFSKLLPTAKTYFNNDTVAS 65
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BLAST of mRNA_P-wetherbeei_contig58069.1.1 vs. uniprot
Match: A0A525JWP4_BRASZ (CvpA family protein n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525JWP4_BRASZ)

HSP 1 Score: 112 bits (280), Expect = 1.340e-29
Identity = 62/65 (95.38%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 MPITILDLVLLGVMLISGLLAMVRGFMREILSIAAWGAAALVTLYAFSKLLPTAKTYFNNDTVAA 195
            MPITILDL LL VMLISGLLAMVRGFMREILSIAAWGAAALVTLY FSKLLPTAKTYFNNDTVAA
Sbjct:    1 MPITILDLALLAVMLISGLLAMVRGFMREILSIAAWGAAALVTLYGFSKLLPTAKTYFNNDTVAA 65
[Close]
BLAST of mRNA_P-wetherbeei_contig58069.1.1 vs. uniprot
Match: A0A1Q4BUZ8_9HYPH (Colicin V synthesis protein n=1 Tax=Rhizobiales bacterium 62-47 TaxID=1895811 RepID=A0A1Q4BUZ8_9HYPH)

HSP 1 Score: 109 bits (273), Expect = 1.560e-28
Identity = 58/65 (89.23%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    1 MPITILDLVLLGVMLISGLLAMVRGFMREILSIAAWGAAALVTLYAFSKLLPTAKTYFNNDTVAA 195
            MPITILDLVLL VML+SGLLAMVRGFMREILSIAAWGAAALVTLY++ KLLPTAKTYFNNDT+A+
Sbjct:    1 MPITILDLVLLAVMLVSGLLAMVRGFMREILSIAAWGAAALVTLYSYQKLLPTAKTYFNNDTIAS 65
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58069.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1E3EEF5_BRAEL1.090e-31100.00Colicin V biosynthesis protein n=51 Tax=Bradyrhizo... [more]
A0A533J2M7_9BRAD1.140e-3192.31CvpA family protein (Fragment) n=1 Tax=Bradyrhizob... [more]
A0A1B1UIK5_9BRAD5.900e-3198.46Colicin V synthesis protein n=21 Tax=Bradyrhizobia... [more]
A4YT51_BRASO1.630e-3093.85Putative Colicin V production protein, cvpA-like (... [more]
M4ZV42_9BRAD2.310e-3092.31Colicin V production protein, CvpA-like protein n=... [more]
A0A0A3XQE6_BRAJP6.700e-3090.77Colicin V synthesis protein n=135 Tax=Hyphomicrobi... [more]
UPI00046677706.700e-3093.85CvpA family protein n=2 Tax=unclassified Bradyrhiz... [more]
UPI00112644E79.480e-3090.77CvpA family protein n=1 Tax=Bradyrhizobium guangdo... [more]
A0A525JWP4_BRASZ1.340e-2995.38CvpA family protein n=1 Tax=Bradyrhizobium sp. Tax... [more]
A0A1Q4BUZ8_9HYPH1.560e-2889.23Colicin V synthesis protein n=1 Tax=Rhizobiales ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58069contigP-wetherbeei_contig58069:313..507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1230476.C207_05496
Preferred namecvpA
PFAMsColicin_V
Model size195
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03558
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.79e-32
EggNOG OGsCOG1286@1|root,COG1286@2|Bacteria,1NF4G@1224|Proteobacteria,2TUVR@28211|Alphaproteobacteria,3JQX3@41294|Bradyrhizobiaceae
DescriptionColicin V production protein
Cds size195
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186860.6050696-CDS-P-wetherbeei_contig58069:312..5071683186860.6050696-CDS-P-wetherbeei_contig58069:312..507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58069 313..507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58069.1.1prot_P-wetherbeei_contig58069.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58069 313..507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58069.1.1

>prot_P-wetherbeei_contig58069.1.1 ID=prot_P-wetherbeei_contig58069.1.1|Name=mRNA_P-wetherbeei_contig58069.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
MPITILDLVLLGVMLISGLLAMVRGFMREILSIAAWGAAALVTLYAFSKL
LPTAKTYFNNDTVAA
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mRNA from alignment at P-wetherbeei_contig58069:313..507+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58069.1.1 ID=mRNA_P-wetherbeei_contig58069.1.1|Name=mRNA_P-wetherbeei_contig58069.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig58069:313..507+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGATAACGATACTCGATCTCGTCCTGCTTGGTGTGATGCTGATTTC
GGGGCTGCTCGCCATGGTGCGCGGCTTCATGCGCGAGATTCTGTCGATCG
CGGCATGGGGTGCGGCGGCCCTGGTCACGCTGTATGCCTTCTCAAAGCTG
CTGCCGACCGCCAAGACTTATTTCAATAACGACACGGTCGCGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58069:313..507+

>mRNA_P-wetherbeei_contig58069.1.1 ID=mRNA_P-wetherbeei_contig58069.1.1|Name=mRNA_P-wetherbeei_contig58069.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig58069:313..507+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGATAACGATACTCGATCTCGTCCTGCTTGGTGTGATGCTGATTTC
GGGGCTGCTCGCCATGGTGCGCGGCTTCATGCGCGAGATTCTGTCGATCG
CGGCATGGGGTGCGGCGGCCCTGGTCACGCTGTATGCCTTCTCAAAGCTG
CTGCCGACCGCCAAGACTTATTTCAATAACGACACGGTCGCGGCC
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