mRNA_P-wetherbeei_contig57973.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57973.1.1
Unique NamemRNA_P-wetherbeei_contig57973.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57973.1.1 vs. uniprot
Match: UPI001AC529B5 (Uncharacterized protein n=1 Tax=Patescibacteria group bacterium TaxID=2052139 RepID=UPI001AC529B5)

HSP 1 Score: 85.5 bits (210), Expect = 7.660e-18
Identity = 46/138 (33.33%), Postives = 80/138 (57.97%), Query Frame = 1 
Query:   16 KKRTLIPMLYRLAQFELGDVDNLVTWFESNAKAERERLDRL---PTDNGPEDQYSDAYGEIESVSHLNSELAVIALWRCVELSRRRVIGNTLGTEAAKNSAYNSKIAGALKRIDVRETSIQRAEDVNELRCLNNAIKH 420
            + R+   M  R+ ++E+  +D+ +       K  ++ L++L    ++N P+D   D + +++  + L +E A++ LWRC+EL R+RVI    GT+AA     + +    LK + + ET I+ A  V+ELRCLNN+IKH
Sbjct:   11 RSRSPYVMYMRITEYEMQGIDHFLELTGRARKLGQQDLEQLVAKASNNVPDDWLVDDFAQLDEFTSLFAEFAIVGLWRCIELYRKRVILFAFGTQAATKVFRHKEFQKQLKSLGIDETQIRCARSVDELRCLNNSIKH 148
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57973.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001AC529B57.660e-1833.33Uncharacterized protein n=1 Tax=Patescibacteria gr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57973contigP-wetherbeei_contig57973:29..463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size435
Hectar predicted targeting categoryother localisation
Exons1
Cds size432
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186859.2163742-UTR-P-wetherbeei_contig57973:28..311683186859.2163742-UTR-P-wetherbeei_contig57973:28..31Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig57973 29..31 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186859.2246134-CDS-P-wetherbeei_contig57973:31..4631683186859.2246134-CDS-P-wetherbeei_contig57973:31..463Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57973 32..463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57973.1.1prot_P-wetherbeei_contig57973.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57973 32..463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57973.1.1

>prot_P-wetherbeei_contig57973.1.1 ID=prot_P-wetherbeei_contig57973.1.1|Name=mRNA_P-wetherbeei_contig57973.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
MHPSKKRTLIPMLYRLAQFELGDVDNLVTWFESNAKAERERLDRLPTDNG
PEDQYSDAYGEIESVSHLNSELAVIALWRCVELSRRRVIGNTLGTEAAKN
SAYNSKIAGALKRIDVRETSIQRAEDVNELRCLNNAIKHEPPRN
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mRNA from alignment at P-wetherbeei_contig57973:29..463+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57973.1.1 ID=mRNA_P-wetherbeei_contig57973.1.1|Name=mRNA_P-wetherbeei_contig57973.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig57973:29..463+ (Phaeothamnion wetherbeei SAG_119_79)
AGAATGCATCCCTCTAAGAAGCGAACTCTCATCCCAATGCTTTACCGACT
CGCGCAATTCGAACTCGGAGATGTTGACAATCTTGTCACCTGGTTCGAGT
CGAACGCGAAGGCAGAAAGAGAACGGCTAGACAGGCTGCCAACAGACAAC
GGGCCAGAGGATCAGTACAGCGATGCGTATGGAGAGATAGAGTCTGTGTC
CCATTTGAACTCCGAGCTTGCTGTCATTGCCTTATGGCGATGTGTGGAAC
TCAGTAGAAGAAGAGTGATAGGAAACACTCTCGGCACAGAGGCAGCCAAG
AACTCTGCGTACAACTCAAAAATCGCAGGCGCACTCAAGCGGATAGATGT
CCGAGAGACGAGTATTCAACGTGCAGAAGATGTCAACGAATTGCGCTGCC
TGAACAACGCGATCAAGCATGAACCGCCCCGGAAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57973:29..463+

>mRNA_P-wetherbeei_contig57973.1.1 ID=mRNA_P-wetherbeei_contig57973.1.1|Name=mRNA_P-wetherbeei_contig57973.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig57973:29..463+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCATCCCTCTAAGAAGCGAACTCTCATCCCAATGCTTTACCGACTCGC
GCAATTCGAACTCGGAGATGTTGACAATCTTGTCACCTGGTTCGAGTCGA
ACGCGAAGGCAGAAAGAGAACGGCTAGACAGGCTGCCAACAGACAACGGG
CCAGAGGATCAGTACAGCGATGCGTATGGAGAGATAGAGTCTGTGTCCCA
TTTGAACTCCGAGCTTGCTGTCATTGCCTTATGGCGATGTGTGGAACTCA
GTAGAAGAAGAGTGATAGGAAACACTCTCGGCACAGAGGCAGCCAAGAAC
TCTGCGTACAACTCAAAAATCGCAGGCGCACTCAAGCGGATAGATGTCCG
AGAGACGAGTATTCAACGTGCAGAAGATGTCAACGAATTGCGCTGCCTGA
ACAACGCGATCAAGCATGAACCGCCCCGGAAT
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