mRNA_P-wetherbeei_contig57960.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57960.1.1
Unique NamemRNA_P-wetherbeei_contig57960.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57960.1.1 vs. uniprot
Match: A0A5C7NJ51_9PROT (Extracellular solute-binding protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A5C7NJ51_9PROT)

HSP 1 Score: 248 bits (634), Expect = 4.340e-79
Identity = 118/169 (69.82%), Postives = 136/169 (80.47%), Query Frame = 1
Query:    1 GANLLWDAKYKGKMAMYDGWQTRAWMASIYTGQDPQGANDTKAMWEACRVQRELVVKYWSSGQEFIDLMGKEEIILSDGWSGRVAALREAGHDIGFIDTANAGFAWLEGLMVLSGSPMPECEQLLDFCSDTKVSVAIAEGQNYPPALDPNKVELTDKVKALPGFDPTGK 507
            G  LLWD KYKGKMA YD +QTR WMA++Y GQDPQ  +D KA+W+ACR QRELVVKYWSSGQEFIDL  KEEI+LSDGWSGRVA+L+ +G DIGF+ T   GFAWLEGL VL GSPM E EQLL+FC + KV++AIAEGQ YP +LDP KV + D VK LPG+D TGK
Sbjct:  188 GVKLLWDEKYKGKMAGYDSFQTRPWMAALYLGQDPQDPSDIKAIWDACRKQRELVVKYWSSGQEFIDLFAKEEIVLSDGWSGRVASLQNSGQDIGFLSTV--GFAWLEGLYVLKGSPMEEAEQLLNFCIEPKVAIAIAEGQFYPTSLDPTKVPMPDSVKKLPGYDDTGK 354          
BLAST of mRNA_P-wetherbeei_contig57960.1.1 vs. uniprot
Match: UPI001C6A82B7 (extracellular solute-binding protein n=1 Tax=Hoeflea sp. WL0058 TaxID=2865987 RepID=UPI001C6A82B7)

HSP 1 Score: 209 bits (531), Expect = 1.310e-63
Identity = 95/168 (56.55%), Postives = 124/168 (73.81%), Query Frame = 1
Query:    1 GANLLWDAKYKGKMAMYDGWQTRAWMASIYTGQDPQGANDTKAMWEACRVQRELVVKYWSSGQEFIDLMGKEEIILSDGWSGRVAALREAGHDIGFIDTANAGFAWLEGLMVLSGSPMPECEQLLDFCSDTKVSVAIAEGQNYPPALDPNKVELTDKVKALPGFDPTG 504
            GA +L D K KGK++ +  W+TR W AS+ T QDP GA D  A+WEA R  R+L++KYWSSG E + L+ +EE+ +++GWSGR+ AL+E GHDIG++D  N GF W E L V+ GSPMPECE+LL+F    + S+A+AEGQNYPPALDP KV+L  K+  LP FDPTG
Sbjct:  184 GAKILLDEKLKGKISGWSAWRTRIWYASLQTDQDPNGATDMDAIWEAIRENRDLLLKYWSSGAELMSLLAEEEVYVTEGWSGRIYALQEQGHDIGYMDPPN-GFGWQECLFVIKGSPMPECEELLNFMLAPETSIAVAEGQNYPPALDPTKVDLGKKIPTLPAFDPTG 350          
BLAST of mRNA_P-wetherbeei_contig57960.1.1 vs. uniprot
Match: UPI001CBB6EC2 (extracellular solute-binding protein n=1 Tax=Oricola indica TaxID=2872591 RepID=UPI001CBB6EC2)

HSP 1 Score: 206 bits (525), Expect = 1.020e-62
Identity = 94/168 (55.95%), Postives = 122/168 (72.62%), Query Frame = 1
Query:    1 GANLLWDAKYKGKMAMYDGWQTRAWMASIYTGQDPQGANDTKAMWEACRVQRELVVKYWSSGQEFIDLMGKEEIILSDGWSGRVAALREAGHDIGFIDTANAGFAWLEGLMVLSGSPMPECEQLLDFCSDTKVSVAIAEGQNYPPALDPNKVELTDKVKALPGFDPTG 504
            GA +L D  YKGK+  +  W+TR W A++ TGQDP GA D  AMW+A R  R+L +KYW+SG E + L+ +EEI +++GWSGR+ AL+E GHDIG++D  N GF W E L V+ GSPM  CE+LL+F    + S+A+AEGQNYPPALDP KV+L DK+  LP FDPTG
Sbjct:  183 GAKILIDDAYKGKIGGWADWRTRMWYAALQTGQDPNGATDVDAMWDAVRAHRDLALKYWTSGAELMSLLAEEEIYVTEGWSGRIYALQEQGHDIGYMDPPN-GFGWQECLFVIKGSPMEACEELLNFMLAPETSIAVAEGQNYPPALDPTKVDLGDKIPTLPAFDPTG 349          
BLAST of mRNA_P-wetherbeei_contig57960.1.1 vs. uniprot
Match: A0A0M6ZRV7_9HYPH (Putrescine-binding periplasmic protein n=16 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0M6ZRV7_9HYPH)

HSP 1 Score: 206 bits (524), Expect = 1.400e-62
Identity = 95/168 (56.55%), Postives = 120/168 (71.43%), Query Frame = 1
Query:    1 GANLLWDAKYKGKMAMYDGWQTRAWMASIYTGQDPQGANDTKAMWEACRVQRELVVKYWSSGQEFIDLMGKEEIILSDGWSGRVAALREAGHDIGFIDTANAGFAWLEGLMVLSGSPMPECEQLLDFCSDTKVSVAIAEGQNYPPALDPNKVELTDKVKALPGFDPTG 504
            GA LL D  YKGK+  +  W+TR W AS+ TGQDP  A D  A+WEA R  R+L++KYW SG E + L+ +EEI +++GWSGR+ AL+E GHDIG+ID  N GF W E L V+ GSPM  CE+LL+F    + S+A+AEGQNYPPALDP KV+L  K+  LP FDPTG
Sbjct:  182 GAKLLIDTAYKGKIGGWSDWRTRVWYASLQTGQDPNNATDMDAVWEAVRTNRDLLLKYWQSGAELMSLLAEEEIYVTEGWSGRIYALQEQGHDIGYIDPPN-GFGWQECLFVIKGSPMEACEELLNFMLAPETSIAVAEGQNYPPALDPTKVDLGSKIPTLPAFDPTG 348          
BLAST of mRNA_P-wetherbeei_contig57960.1.1 vs. uniprot
Match: A0A3F2UFP7_9HYPH (Extracellular solute-binding protein n=5 Tax=Phyllobacteriaceae TaxID=69277 RepID=A0A3F2UFP7_9HYPH)

HSP 1 Score: 205 bits (522), Expect = 2.870e-62
Identity = 93/168 (55.36%), Postives = 124/168 (73.81%), Query Frame = 1
Query:    1 GANLLWDAKYKGKMAMYDGWQTRAWMASIYTGQDPQGANDTKAMWEACRVQRELVVKYWSSGQEFIDLMGKEEIILSDGWSGRVAALREAGHDIGFIDTANAGFAWLEGLMVLSGSPMPECEQLLDFCSDTKVSVAIAEGQNYPPALDPNKVELTDKVKALPGFDPTG 504
            GA LL D KY GK+  Y    TR W A++ TGQDP    D +A+W   R  R+L  K+WSSG E +DL+ K EI+++DGWSGR+AAL++ GH IG++D   + +AW+E +++L GSPM ECE+L++F  +T  S+A+AEGQNYPP+LDP KVELTDK+KALP FDPTG
Sbjct:  183 GAALLSDKKYAGKIGGYADMTTRVWYAALDTGQDPNNIKDMEAIWAKVRETRDLAKKFWSSGAELMDLLSKGEIVVTDGWSGRIAALQQQGHPIGYLDPTGS-YAWMEDMLILKGSPMAECEELINFMLETDTSIAVAEGQNYPPSLDPTKVELTDKIKALPAFDPTG 349          
BLAST of mRNA_P-wetherbeei_contig57960.1.1 vs. uniprot
Match: A0A1P8UXE2_9RHOB (Spermidine/putrescine transport system substrate-binding protein n=9 Tax=Rhodobacterales TaxID=204455 RepID=A0A1P8UXE2_9RHOB)

HSP 1 Score: 205 bits (522), Expect = 3.100e-62
Identity = 94/168 (55.95%), Postives = 122/168 (72.62%), Query Frame = 1
Query:    1 GANLLWDAKYKGKMAMYDGWQTRAWMASIYTGQDPQGANDTKAMWEACRVQRELVVKYWSSGQEFIDLMGKEEIILSDGWSGRVAALREAGHDIGFIDTANAGFAWLEGLMVLSGSPMPECEQLLDFCSDTKVSVAIAEGQNYPPALDPNKVELTDKVKALPGFDPTG 504
            GA +L D  YKGK+A +  W+TR W AS+ TGQDP GA D +A+W+A R  R+L +KYW+SG E + L+ +EEI +++GWSGR+ AL+E GHDIG+ D  N G+ W E L VL GSPM  CE+LL+F    + S+A+AEGQNYPPALDPNKV+L  K+  LP FDP G
Sbjct:  186 GAKILIDEAYKGKIAGWSDWRTRIWFASLQTGQDPNGATDMEAVWDAIRAHRDLSLKYWTSGAELMSLLAEEEIYVTEGWSGRIYALQEQGHDIGYYDPPN-GYGWQECLFVLKGSPMEACEELLNFMLAPETSIAVAEGQNYPPALDPNKVDLGSKIPTLPAFDPKG 352          
BLAST of mRNA_P-wetherbeei_contig57960.1.1 vs. uniprot
Match: A0A7G3D508_9RHOB (Extracellular solute-binding protein n=1 Tax=Carideicomes alvinocaridis TaxID=2541728 RepID=A0A7G3D508_9RHOB)

HSP 1 Score: 205 bits (522), Expect = 3.180e-62
Identity = 93/168 (55.36%), Postives = 123/168 (73.21%), Query Frame = 1
Query:    1 GANLLWDAKYKGKMAMYDGWQTRAWMASIYTGQDPQGANDTKAMWEACRVQRELVVKYWSSGQEFIDLMGKEEIILSDGWSGRVAALREAGHDIGFIDTANAGFAWLEGLMVLSGSPMPECEQLLDFCSDTKVSVAIAEGQNYPPALDPNKVELTDKVKALPGFDPTG 504
            GA +L D KYKGK+A +  W+TR W AS+ TGQDP  A D  A+W+A R  R+L +KYW+SG E + L+ +EEI +++GWSGR+ AL+E GHDIG++D  N G+ W E + VL GSPM  CE+LL+F    + S+A+AEGQNYPPALDP KV+L DK+  LP FDP+G
Sbjct:  187 GAKILIDEKYKGKIAGWSDWRTRIWFASLQTGQDPNNAEDMDAVWDAIRKHRDLALKYWTSGAELMSLLAEEEIYVTEGWSGRIYALQEQGHDIGYMDPPN-GYGWQECMFVLKGSPMEACEELLNFMLAPETSIAVAEGQNYPPALDPQKVDLGDKIPTLPAFDPSG 353          
BLAST of mRNA_P-wetherbeei_contig57960.1.1 vs. uniprot
Match: A0A2E2X4K8_9HYPH (Spermidine/putrescine ABC transporter substrate-binding protein n=5 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2E2X4K8_9HYPH)

HSP 1 Score: 205 bits (521), Expect = 3.940e-62
Identity = 94/168 (55.95%), Postives = 120/168 (71.43%), Query Frame = 1
Query:    1 GANLLWDAKYKGKMAMYDGWQTRAWMASIYTGQDPQGANDTKAMWEACRVQRELVVKYWSSGQEFIDLMGKEEIILSDGWSGRVAALREAGHDIGFIDTANAGFAWLEGLMVLSGSPMPECEQLLDFCSDTKVSVAIAEGQNYPPALDPNKVELTDKVKALPGFDPTG 504
            GA +L D KYKGK+A +  W+TR W AS+ TGQDP  A D  A W A R  R+L +KYW+SG E + L+ +EEI +++GWSGR+ AL+E GHDIG++D  N GF W E L V+ GSPMPEC +LL+F    + S+A+AEG NYPPALDP KV+L  K+  LP FDPTG
Sbjct:  182 GAKILLDEKYKGKIAGWSDWRTRXWXASLQTGQDPNNATDMDAXWXAIRTHRDLSLKYWTSGAELMSLLAEEEIYVTEGWSGRIYALQEXGHDIGYMDPPN-GFGWQEXLFVIKGSPMPECXELLNFMLAPETSIAVAEGXNYPPALDPQKVDLGKKIPTLPAFDPTG 348          
BLAST of mRNA_P-wetherbeei_contig57960.1.1 vs. uniprot
Match: A0A7W6WLQ2_9PROT (Spermidine/putrescine transport system substrate-binding protein n=2 Tax=Rhodospirillaceae TaxID=41295 RepID=A0A7W6WLQ2_9PROT)

HSP 1 Score: 205 bits (521), Expect = 4.500e-62
Identity = 94/168 (55.95%), Postives = 125/168 (74.40%), Query Frame = 1
Query:    1 GANLLWDAKYKGKMAMYDGWQTRAWMASIYTGQDPQGANDTKAMWEACRVQRELVVKYWSSGQEFIDLMGKEEIILSDGWSGRVAALREAGHDIGFIDTANAGFAWLEGLMVLSGSPMPECEQLLDFCSDTKVSVAIAEGQNYPPALDPNKVELTDKVKALPGFDPTG 504
            GANLL +  +KGK+  +  W+TR W A++ TGQDP G  D  A+W+  R  R+L++KYW+SG E + L+ +EEI +++ WSGRV AL+E GHDIG++D    G AW E L V+ GSPM  CE+LL+F  + +V++A+AEGQNYPPALDP KVELTDKV+ALP FDPTG
Sbjct:  187 GANLLVNPDFKGKIGGWGEWKTRIWYAALQTGQDPNGIEDMDAVWDKLREHRDLLLKYWNSGAELMSLLAEEEIYVTEAWSGRVKALQEQGHDIGYLDPPG-GLAWQECLFVIKGSPMAACEELLNFMLEPEVAIAVAEGQNYPPALDPTKVELTDKVRALPAFDPTG 353          
BLAST of mRNA_P-wetherbeei_contig57960.1.1 vs. uniprot
Match: A0A1H2G4R8_9HYPH (Spermidine/putrescine transport system substrate-binding protein n=6 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1H2G4R8_9HYPH)

HSP 1 Score: 204 bits (519), Expect = 7.880e-62
Identity = 94/169 (55.62%), Postives = 124/169 (73.37%), Query Frame = 1
Query:    1 GANLLWDAKYKGKMAMYDGWQTRAWMASIYTGQDPQGANDTKAMWEACRVQRELVVKYWSSGQEFIDLMGKEEIILSDGWSGRVAALREAGHDIGFIDTANAGFAWLEGLMVLSGSPMPECEQLLDFCSDTKVSVAIAEGQNYPPALDPNKVELTDKVKALPGFDPTGK 507
            GAN+L D ++K K+A +  W+TR W AS+ TGQDP GA D  A+WEA R  R+L++KYWSSG E + L+ +EEI +++ WSGRV AL+E GHDIG++D  N GF W E L V+  SPM  CE+LL+F    + S+A+AEGQ+YPPALDP KV+L +K+  LP FDPTGK
Sbjct:  182 GANILLDERFKDKIAGWSDWRTRIWYASLQTGQDPNGATDMDAVWEAVRAHRDLLLKYWSSGAELMSLLAEEEIYVTEAWSGRVYALQEQGHDIGYMDPPN-GFGWQECLFVMKDSPMEPCEELLNFMLAPETSIAVAEGQSYPPALDPTKVDLGEKIPKLPAFDPTGK 349          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57960.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5C7NJ51_9PROT4.340e-7969.82Extracellular solute-binding protein n=1 Tax=Rhodo... [more]
UPI001C6A82B71.310e-6356.55extracellular solute-binding protein n=1 Tax=Hoefl... [more]
UPI001CBB6EC21.020e-6255.95extracellular solute-binding protein n=1 Tax=Orico... [more]
A0A0M6ZRV7_9HYPH1.400e-6256.55Putrescine-binding periplasmic protein n=16 Tax=Al... [more]
A0A3F2UFP7_9HYPH2.870e-6255.36Extracellular solute-binding protein n=5 Tax=Phyll... [more]
A0A1P8UXE2_9RHOB3.100e-6255.95Spermidine/putrescine transport system substrate-b... [more]
A0A7G3D508_9RHOB3.180e-6255.36Extracellular solute-binding protein n=1 Tax=Carid... [more]
A0A2E2X4K8_9HYPH3.940e-6255.95Spermidine/putrescine ABC transporter substrate-bi... [more]
A0A7W6WLQ2_9PROT4.500e-6255.95Spermidine/putrescine transport system substrate-b... [more]
A0A1H2G4R8_9HYPH7.880e-6255.62Spermidine/putrescine transport system substrate-b... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57960contigP-wetherbeei_contig57960:2..508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1089552.KI911559_gene1042
PFAMsSBP_bac_8
Model size507
Max annot lvl204441|Rhodospirillales
KEGG koko:K11069
KEGG TC3.A.1.11.1
KEGG Pathwayko02010,map02010
KEGG ModuleM00299
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.17e-61
EggNOG OGsCOG0687@1|root,COG0687@2|Bacteria,1Q2AN@1224|Proteobacteria,2U1XB@28211|Alphaproteobacteria,2JPMA@204441|Rhodospirillales
DescriptionBacterial extracellular solute-binding protein
Cds size507
COG categoryE
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186858.9951365-CDS-P-wetherbeei_contig57960:1..5081683186858.9951365-CDS-P-wetherbeei_contig57960:1..508Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57960 2..508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57960.1.1prot_P-wetherbeei_contig57960.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57960 2..508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57960.1.1

>prot_P-wetherbeei_contig57960.1.1 ID=prot_P-wetherbeei_contig57960.1.1|Name=mRNA_P-wetherbeei_contig57960.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
GANLLWDAKYKGKMAMYDGWQTRAWMASIYTGQDPQGANDTKAMWEACRV
QRELVVKYWSSGQEFIDLMGKEEIILSDGWSGRVAALREAGHDIGFIDTA
NAGFAWLEGLMVLSGSPMPECEQLLDFCSDTKVSVAIAEGQNYPPALDPN
KVELTDKVKALPGFDPTGK
back to top

mRNA from alignment at P-wetherbeei_contig57960:2..508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57960.1.1 ID=mRNA_P-wetherbeei_contig57960.1.1|Name=mRNA_P-wetherbeei_contig57960.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57960:2..508+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGCCAATCTGCTGTGGGATGCGAAATACAAGGGCAAGATGGCGATGTA CGACGGCTGGCAGACCCGCGCGTGGATGGCCAGCATCTACACCGGCCAGG ACCCGCAGGGCGCCAACGACACCAAGGCGATGTGGGAAGCCTGCCGCGTG CAGCGTGAACTGGTGGTGAAATACTGGAGCTCCGGCCAGGAATTCATCGA CCTGATGGGCAAGGAGGAGATCATCCTCTCCGACGGCTGGTCGGGCCGCG TCGCGGCGCTGCGTGAAGCCGGCCACGATATCGGCTTCATCGACACCGCC AATGCCGGCTTCGCTTGGCTCGAGGGCCTGATGGTGCTGTCCGGCAGCCC GATGCCGGAATGCGAGCAGCTGCTCGACTTCTGCAGCGACACCAAGGTCT CGGTCGCCATCGCCGAGGGCCAGAACTATCCGCCGGCGCTCGACCCCAAC AAGGTGGAGCTGACCGACAAGGTGAAGGCGTTGCCCGGCTTCGACCCGAC CGGCAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig57960:2..508+

>mRNA_P-wetherbeei_contig57960.1.1 ID=mRNA_P-wetherbeei_contig57960.1.1|Name=mRNA_P-wetherbeei_contig57960.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57960:2..508+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGCCAATCTGCTGTGGGATGCGAAATACAAGGGCAAGATGGCGATGTA
CGACGGCTGGCAGACCCGCGCGTGGATGGCCAGCATCTACACCGGCCAGG
ACCCGCAGGGCGCCAACGACACCAAGGCGATGTGGGAAGCCTGCCGCGTG
CAGCGTGAACTGGTGGTGAAATACTGGAGCTCCGGCCAGGAATTCATCGA
CCTGATGGGCAAGGAGGAGATCATCCTCTCCGACGGCTGGTCGGGCCGCG
TCGCGGCGCTGCGTGAAGCCGGCCACGATATCGGCTTCATCGACACCGCC
AATGCCGGCTTCGCTTGGCTCGAGGGCCTGATGGTGCTGTCCGGCAGCCC
GATGCCGGAATGCGAGCAGCTGCTCGACTTCTGCAGCGACACCAAGGTCT
CGGTCGCCATCGCCGAGGGCCAGAACTATCCGCCGGCGCTCGACCCCAAC
AAGGTGGAGCTGACCGACAAGGTGAAGGCGTTGCCCGGCTTCGACCCGAC
CGGCAAG
back to top