mRNA_P-wetherbeei_contig57940.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57940.1.1
Unique NamemRNA_P-wetherbeei_contig57940.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57940.1.1 vs. uniprot
Match: A0A836TNU5_9PROT (Porin n=1 Tax=Sneathiellales bacterium TaxID=2528251 RepID=A0A836TNU5_9PROT)

HSP 1 Score: 227 bits (578), Expect = 4.230e-70
Identity = 111/170 (65.29%), Postives = 134/170 (78.82%), Query Frame = 1
Query:    1 DRIRLQTELELEHSIAGEGKPGEIELEQAYLEFDVTDRAKVKTGLFLLPIGILNETHEPNTFFGVERNIVETNVIPTTWWEGGVATSYDFGGGFSADLAAHSGLKVDPA---TFTIRSGRQKVGNATAKDAAYTGRVKWTGMPGVELALSAQYQNDITQSVQPTGATLVE 501
            DRIRL++E+ELEHSIAGEGK GE+ELEQA++EFD+ D+   + GLFL+P+GI+NETHEP TF+GVERN VE N+IPTTWWEGGV+ +  FG GFS DLAAHSGL V       + IRSGR+KV  A AKD AYTGRVKW+GMPGVE+A++ QYQ DITQ    T A  +E
Sbjct:  146 DRIRLKSEIELEHSIAGEGKNGEVELEQAFVEFDINDQNTTRAGLFLIPVGIMNETHEPPTFYGVERNPVEKNIIPTTWWEGGVSWATRFGSGFSVDLAAHSGLDVPDTGGNAYKIRSGRKKVSKAPAKDLAYTGRVKWSGMPGVEVAVTGQYQGDITQGNTDTEAFFIE 315          
BLAST of mRNA_P-wetherbeei_contig57940.1.1 vs. uniprot
Match: A0A2E6QEB7_9PROT (Porin n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QEB7_9PROT)

HSP 1 Score: 220 bits (560), Expect = 1.680e-67
Identity = 112/171 (65.50%), Postives = 128/171 (74.85%), Query Frame = 1
Query:    1 DRIRLQTELELEHSIAGEGKPGEIELEQAYLEFDVTDRAKVKTGLFLLPIGILNETHEPNTFFGVERNIVETNVIPTTWWEGGVATSYDFGGGFSADLAAHSGLKVDPAT----FTIRSGRQKVGNATAKDAAYTGRVKWTGMPGVELALSAQYQNDITQSVQPTGATLVE 501
            DR+RL TE ELEH++AGEG+PGE+ELEQA++EFDVTD    + GLFLLP+GI+NETHEP TFFGVERN VE+ +IPTTWWE GV  S   GGGFS D A HSGL V P T    F IRSGRQKV  A A+D A TGR++WTGMPGVELA S QYQ D+TQ       TL E
Sbjct:  129 DRLRLFTEFELEHALAGEGQPGEVELEQAWIEFDVTDTQHARAGLFLLPVGIMNETHEPPTFFGVERNQVESAIIPTTWWEAGVGMSGQIGGGFSYDAAFHSGLSV-PITGGNAFVIRSGRQKVAEAPAEDFAATGRLRWTGMPGVELATSLQYQQDVTQDALDVSGTLFE 298          
BLAST of mRNA_P-wetherbeei_contig57940.1.1 vs. uniprot
Match: A0A1Z7WU75_9GAMM (Porin n=2 Tax=unclassified Methylophaga TaxID=2629249 RepID=A0A1Z7WU75_9GAMM)

HSP 1 Score: 214 bits (544), Expect = 3.610e-65
Identity = 107/171 (62.57%), Postives = 130/171 (76.02%), Query Frame = 1
Query:    1 DRIRLQTELELEHSIAGEGKPGEIELEQAYLEFDVTDRAKVKTGLFLLPIGILNETHEPNTFFGVERNIVETNVIPTTWWEGGVATSYDFGGGFSADLAAHSGLKVDPA-TFTIRSGRQKVGNATAKDAAYTGRVKWTGMPGVELALSAQYQNDITQSVQPT--GATLVET 504
            D +R  +ELELEHS+AG+GK GE+ELEQAY+E+D+ D+ +V  GLFL P+GI+NETHEPNTF+G ERN VE N+IP+TWWE GV  S +   GFS D+AA SGL      ++ +RSGRQKV  A A+D AYTGR+KWTG+PGVELA S QYQ DITQS   T  GATL ET
Sbjct:  135 DNLRFFSELELEHSLAGDGKEGEVELEQAYIEYDINDQHQVTGGLFLTPVGIINETHEPNTFYGTERNSVEKNIIPSTWWEAGVMFSGEIAEGFSYDVAATSGLNTSSGDSYKVRSGRQKVSKAEAEDYAYTGRIKWTGLPGVELAASLQYQEDITQSNDKTAGGATLFET 305          
BLAST of mRNA_P-wetherbeei_contig57940.1.1 vs. uniprot
Match: A0A661DTS9_9GAMM (Porin n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661DTS9_9GAMM)

HSP 1 Score: 211 bits (538), Expect = 1.240e-64
Identity = 104/171 (60.82%), Postives = 131/171 (76.61%), Query Frame = 1
Query:    1 DRIRLQTELELEHSIAGEGKPGEIELEQAYLEFDVTDRAKVKTGLFLLPIGILNETHEPNTFFGVERNIVETNVIPTTWWEGGVATSYDFGGGFSADLAAHSGLKVDPAT-FTIRSGRQKVGNATAKDAAYTGRVKWTGMPGVELALSAQYQNDITQSVQPTG--ATLVET 504
            D +R  +ELELEHS++G+GK GEIELEQAY+E+D+ D+ +VK GLFL+P+GI+NETHEP TF+G ERN VE N++P TWWEGG   S D   GFS D+AA SGL    +  + +R+GRQKV  A A+D AYTGR+KWTG+PG+EL+ +AQYQ DITQS  PT   ATL ET
Sbjct:  102 DDLRFFSELELEHSLSGDGKEGEIELEQAYIEYDINDQHRVKGGLFLMPVGIINETHEPTTFYGTERNPVEKNIVPATWWEGGAMFSGDIAEGFSYDVAATSGLNTTVSKDYKVRNGRQKVSKAEAEDFAYTGRLKWTGIPGIELSATAQYQEDITQSNDPTAGSATLYET 272          
BLAST of mRNA_P-wetherbeei_contig57940.1.1 vs. uniprot
Match: A0A3C0TY12_9PROT (Porin n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TY12_9PROT)

HSP 1 Score: 211 bits (536), Expect = 3.990e-64
Identity = 109/172 (63.37%), Postives = 128/172 (74.42%), Query Frame = 1
Query:    1 DRIRLQTELELEHSIAGEGKPGEIELEQAYLEFDVTDRAKVKTGLFLLPIGILNETHEPNTFFGVERNIVETNVIPTTWWEGGVATSYDFGGGFSADLAAHSGLKVDPAT----FTIRSGRQKVGNATAKDAAYTGRVKWTGMPGVELALSAQYQNDITQSVQPTGATLVET 504
            D IR  +E+ELEHS+AGEGK GE+ELEQA++EFD+T   K + GLFLLPIGILNETHEP TF+GVERN VETN+IPTTWWEGGV    + G GFS +LA HSGL V P T    F  R+GR KV  A A D A T R++W G+PGVEL LS QYQNDITQ+   + A L+ET
Sbjct:  117 DSIRFFSEVELEHSLAGEGKKGEVELEQAFVEFDLTGTQKAQAGLFLLPIGILNETHEPPTFYGVERNGVETNIIPTTWWEGGVQARGELGRGFSYNLAMHSGLDV-PTTGANAFRPRNGRAKVSEAPANDPAITARLRWNGLPGVELGLSGQYQNDITQNADDSEAFLIET 287          
BLAST of mRNA_P-wetherbeei_contig57940.1.1 vs. uniprot
Match: A0A2H0QID6_9PROT (Porin n=1 Tax=Alphaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_44_7 TaxID=1973901 RepID=A0A2H0QID6_9PROT)

HSP 1 Score: 211 bits (536), Expect = 6.320e-64
Identity = 103/162 (63.58%), Postives = 129/162 (79.63%), Query Frame = 1
Query:    1 DRIRLQTELELEHSIAGEGKPGEIELEQAYLEFDVTDRAKVKTGLFLLPIGILNETHEPNTFFGVERNIVETNVIPTTWWEGGVATSYDFGGGFSADLAAHSGLKVDPAT----FTIRSGRQKVGNATAKDAAYTGRVKWTGMPGVELALSAQYQNDITQSV 474
            D +RL +E+ELEHSIAGEG+ GE ELEQA+LE+D+ D  + + G+FLLP+GILNETHEP TFFGVERN VE+N+IP+TWWEGGV  S + G GFS D+A HSGL V P T    + +R+GR KVG A A+D A TGR+KWTG PGVE+A +AQYQ+D+TQS+
Sbjct:  132 DDLRLYSEVELEHSIAGEGQVGEFELEQAFLEYDINDYNRARAGVFLLPVGILNETHEPPTFFGVERNPVESNIIPSTWWEGGVGFSGELGEGFSYDVALHSGLNV-PMTGGSAYKVRNGRSKVGKAQAEDGAVTGRLKWTGYPGVEIAATAQYQSDVTQSM 292          
BLAST of mRNA_P-wetherbeei_contig57940.1.1 vs. uniprot
Match: A0A2G2JUA1_9GAMM (Porin n=1 Tax=Oceanobacter sp. TaxID=2030817 RepID=A0A2G2JUA1_9GAMM)

HSP 1 Score: 208 bits (529), Expect = 8.210e-64
Identity = 109/168 (64.88%), Postives = 127/168 (75.60%), Query Frame = 1
Query:    4 RIRLQTELELEHSIAGEGKPGEIELEQAYLEFDVTDRAKVKTGLFLLPIGILNETHEPNTFFGVERNIVETNVIPTTWWEGGVATSYDFGGGFSADLAAHSGLKVDPATFTIRSGRQKVGNATAKDAAYTGRVKWTGMPGVELALSAQYQNDITQSV--QPTGATLVE 501
            R R  +ELELEHS+AGEGKPGE+ELEQAY+E+DV D  K + GLFLLPIGILNETHEP+TF+GVERN VE  +IPTTWWEGGV+ S     G S D+A HSGL  + AT  IRSGRQKV  ATA  AAYT RVK+T +PG+ELA+S QYQ+DI Q       GA L+E
Sbjct:   58 RTRFFSELELEHSLAGEGKPGEVELEQAYVEYDVNDSTKARAGLFLLPIGILNETHEPDTFYGVERNNVEKRIIPTTWWEGGVSLSGSIVYGVSYDVAIHSGLNNEEAT--IRSGRQKVAEATANKAAYTARVKYTAIPGLELAVSGQYQDDILQGAGDDEIGAGLIE 223          
BLAST of mRNA_P-wetherbeei_contig57940.1.1 vs. uniprot
Match: W8G3A1_9GAMM (Porin n=6 Tax=root TaxID=1 RepID=W8G3A1_9GAMM)

HSP 1 Score: 209 bits (531), Expect = 9.380e-64
Identity = 110/170 (64.71%), Postives = 129/170 (75.88%), Query Frame = 1
Query:    1 DRIRLQTELELEHSIAGEGKPGEIELEQAYLEFDVTDRAKVKTGLFLLPIGILNETHEPNTFFGVERNIVETNVIPTTWWEGGVATSYDFGGGFSADLAAHSGLKVDPATFTIRSGRQKVGNATAKDAAYTGRVKWTGMPGVELALSAQYQNDITQS--VQPTGATLVET 504
            +R R  +E ELEHSIAGEGK GEIELEQA++E+DV D  KVK GLFLLP+GILNETHEP TF+GVERN VE N+IPTTWWEGGVA S D   G S D+A HSGL  + AT ++RSGRQKV  A A  AAYT R+K+T +PG+ELA S QYQ+DI Q    +  GA L+ET
Sbjct:   91 ERTRFFSEFELEHSIAGEGKNGEIELEQAFIEYDVADTTKVKGGLFLLPVGILNETHEPETFYGVERNNVEKNIIPTTWWEGGVAVSGDVADGVSYDVAVHSGL--NSATGSLRSGRQKVSEAPANKAAYTARLKYTAIPGLELAASVQYQDDILQGDGEREIGARLLET 258          
BLAST of mRNA_P-wetherbeei_contig57940.1.1 vs. uniprot
Match: A0A426QL66_9GAMM (Porin n=1 Tax=Thiohalobacter thiocyanaticus TaxID=585455 RepID=A0A426QL66_9GAMM)

HSP 1 Score: 209 bits (531), Expect = 2.130e-63
Identity = 99/157 (63.06%), Postives = 121/157 (77.07%), Query Frame = 1
Query:    1 DRIRLQTELELEHSIAGEGKPGEIELEQAYLEFDVTDRAKVKTGLFLLPIGILNETHEPNTFFGVERNIVETNVIPTTWWEGGVATSYDFGGGFSADLAAHSGLKVDPAT-FTIRSGRQKVGNATAKDAAYTGRVKWTGMPGVELALSAQYQNDITQ 468
            D IRL TELE+EH++AGEG+PGE+ELEQAY+E D+ D  + K G+FLLP+GILNETHEPNTF+GVERN +E N+IPTTWW  G   S + G GFS DL  H GL++  AT F +R GRQK   A A D AYTGR+K+TGMPG+ELA + Q+Q DITQ
Sbjct:  119 DNIRLFTELEIEHALAGEGQPGEVELEQAYVEMDLNDYHRAKAGVFLLPVGILNETHEPNTFYGVERNPIEKNIIPTTWWAAGAGLSGELGQGFSYDLGVHEGLRITDATSFAVRGGRQKSAEADASDLAYTGRLKYTGMPGLELATTLQHQTDITQ 275          
BLAST of mRNA_P-wetherbeei_contig57940.1.1 vs. uniprot
Match: A0A4Y8UI86_9GAMM (Porin n=1 Tax=Gammaproteobacteria bacterium LSUCC0057 TaxID=2559237 RepID=A0A4Y8UI86_9GAMM)

HSP 1 Score: 208 bits (529), Expect = 6.890e-63
Identity = 104/176 (59.09%), Postives = 134/176 (76.14%), Query Frame = 1
Query:    1 DRIRLQTELELEHSIAGEGKPGEIELEQAYLEFDVTDRAKVKTGLFLLPIGILNETHEPNTFFGVERNIVETNVIPTTWWEGGVATSYDFGGGFSADLAAHSGLKVDP---ATFTIRSGRQKVGNATAKDAAYTGRVKWTGMPGVELALSAQYQNDITQSVQPTG------ATLVE 501
            D++RL +ELELEHSIAG+G+PGEIELEQAY+E+D   R + K GLFL+P+G+LNETHEP TF+GVERN +E  +IPTTWWEGG A +  +G GFS D A HSGL ++P     + IRSGRQKVGNA A D AYTGR++++G+PG+ +++SAQYQ D+ Q  Q T       ATL+E
Sbjct:  131 DKLRLVSELELEHSIAGDGQPGEIELEQAYVEWDYAARQQAKFGLFLVPVGMLNETHEPETFYGVERNNIEKEIIPTTWWEGGAALTGRWGEGFSYDAAIHSGLFLNPEENGVYKIRSGRQKVGNANATDFAYTGRLRYSGIPGLSVSVSAQYQTDLLQGEQHTSGAQSLSATLIE 306          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57940.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836TNU5_9PROT4.230e-7065.29Porin n=1 Tax=Sneathiellales bacterium TaxID=25282... [more]
A0A2E6QEB7_9PROT1.680e-6765.50Porin n=1 Tax=Rhodospirillaceae bacterium TaxID=18... [more]
A0A1Z7WU75_9GAMM3.610e-6562.57Porin n=2 Tax=unclassified Methylophaga TaxID=2629... [more]
A0A661DTS9_9GAMM1.240e-6460.82Porin n=1 Tax=Gammaproteobacteria bacterium TaxID=... [more]
A0A3C0TY12_9PROT3.990e-6463.37Porin n=1 Tax=Alphaproteobacteria bacterium TaxID=... [more]
A0A2H0QID6_9PROT6.320e-6463.58Porin n=1 Tax=Alphaproteobacteria bacterium CG11_b... [more]
A0A2G2JUA1_9GAMM8.210e-6464.88Porin n=1 Tax=Oceanobacter sp. TaxID=2030817 RepID... [more]
W8G3A1_9GAMM9.380e-6464.71Porin n=6 Tax=root TaxID=1 RepID=W8G3A1_9GAMM[more]
A0A426QL66_9GAMM2.130e-6363.06Porin n=1 Tax=Thiohalobacter thiocyanaticus TaxID=... [more]
A0A4Y8UI86_9GAMM6.890e-6359.09Porin n=1 Tax=Gammaproteobacteria bacterium LSUCC0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57940contigP-wetherbeei_contig57940:3..506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1026882.MAMP_01532
PFAMsPorin_O_P
Model size504
Max annot lvl72273|Thiotrichales
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.33e-63
EggNOG OGsCOG3746@1|root,COG3746@2|Bacteria,1QYIH@1224|Proteobacteria,1T5GX@1236|Gammaproteobacteria,463WY@72273|Thiotrichales
DescriptionPhosphate-selective porin O and P
Cds size504
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186858.8535347-CDS-P-wetherbeei_contig57940:2..5061683186858.8535347-CDS-P-wetherbeei_contig57940:2..506Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57940 3..506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57940.1.1prot_P-wetherbeei_contig57940.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57940 3..506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57940.1.1

>prot_P-wetherbeei_contig57940.1.1 ID=prot_P-wetherbeei_contig57940.1.1|Name=mRNA_P-wetherbeei_contig57940.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
DRIRLQTELELEHSIAGEGKPGEIELEQAYLEFDVTDRAKVKTGLFLLPI
GILNETHEPNTFFGVERNIVETNVIPTTWWEGGVATSYDFGGGFSADLAA
HSGLKVDPATFTIRSGRQKVGNATAKDAAYTGRVKWTGMPGVELALSAQY
QNDITQSVQPTGATLVET
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mRNA from alignment at P-wetherbeei_contig57940:3..506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57940.1.1 ID=mRNA_P-wetherbeei_contig57940.1.1|Name=mRNA_P-wetherbeei_contig57940.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig57940:3..506+ (Phaeothamnion wetherbeei SAG_119_79)
GACCGCATCCGGCTGCAGACCGAACTGGAGCTCGAGCACTCAATCGCGGG CGAAGGCAAGCCCGGCGAGATCGAACTCGAGCAGGCCTATCTCGAGTTCG ACGTGACCGATCGCGCCAAGGTGAAGACCGGTCTGTTCCTGTTGCCGATC GGCATCCTCAACGAGACGCACGAGCCGAACACCTTCTTCGGCGTCGAGCG CAACATCGTCGAAACCAACGTCATCCCCACCACCTGGTGGGAGGGTGGCG TCGCCACCAGCTACGATTTCGGCGGCGGCTTCAGCGCCGATCTCGCGGCG CACTCCGGCCTGAAAGTCGATCCGGCAACCTTCACCATCCGCAGCGGCCG CCAGAAGGTTGGCAATGCAACCGCCAAGGACGCGGCGTACACCGGGCGCG TCAAGTGGACCGGCATGCCCGGCGTGGAGCTCGCACTCAGCGCGCAGTAC CAGAACGACATCACGCAAAGCGTGCAGCCGACCGGGGCGACGCTGGTCGA AACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57940:3..506+

>mRNA_P-wetherbeei_contig57940.1.1 ID=mRNA_P-wetherbeei_contig57940.1.1|Name=mRNA_P-wetherbeei_contig57940.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig57940:3..506+ (Phaeothamnion wetherbeei SAG_119_79)
GACCGCATCCGGCTGCAGACCGAACTGGAGCTCGAGCACTCAATCGCGGG
CGAAGGCAAGCCCGGCGAGATCGAACTCGAGCAGGCCTATCTCGAGTTCG
ACGTGACCGATCGCGCCAAGGTGAAGACCGGTCTGTTCCTGTTGCCGATC
GGCATCCTCAACGAGACGCACGAGCCGAACACCTTCTTCGGCGTCGAGCG
CAACATCGTCGAAACCAACGTCATCCCCACCACCTGGTGGGAGGGTGGCG
TCGCCACCAGCTACGATTTCGGCGGCGGCTTCAGCGCCGATCTCGCGGCG
CACTCCGGCCTGAAAGTCGATCCGGCAACCTTCACCATCCGCAGCGGCCG
CCAGAAGGTTGGCAATGCAACCGCCAAGGACGCGGCGTACACCGGGCGCG
TCAAGTGGACCGGCATGCCCGGCGTGGAGCTCGCACTCAGCGCGCAGTAC
CAGAACGACATCACGCAAAGCGTGCAGCCGACCGGGGCGACGCTGGTCGA
AACC
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