mRNA_P-wetherbeei_contig5793.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5793.1.1
Unique NamemRNA_P-wetherbeei_contig5793.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5793.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5793contigP-wetherbeei_contig5793:600..2714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1679
Hectar predicted targeting categorysignal peptide
Exons3
Cds size900
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186858.7251885-UTR-P-wetherbeei_contig5793:599..12081683186858.7251885-UTR-P-wetherbeei_contig5793:599..1208Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5793 600..1208 +
1683186858.759848-UTR-P-wetherbeei_contig5793:2253..23431683186858.759848-UTR-P-wetherbeei_contig5793:2253..2343Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5793 2254..2343 +
1683186858.7706773-UTR-P-wetherbeei_contig5793:2634..27141683186858.7706773-UTR-P-wetherbeei_contig5793:2634..2714Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5793 2635..2714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186858.735163-CDS-P-wetherbeei_contig5793:1208..15351683186858.735163-CDS-P-wetherbeei_contig5793:1208..1535Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5793 1209..1535 +
1683186858.750162-CDS-P-wetherbeei_contig5793:1680..22531683186858.750162-CDS-P-wetherbeei_contig5793:1680..2253Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5793 1681..2253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5793.1.1prot_P-wetherbeei_contig5793.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5793 1209..2253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5793.1.1

>prot_P-wetherbeei_contig5793.1.1 ID=prot_P-wetherbeei_contig5793.1.1|Name=mRNA_P-wetherbeei_contig5793.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=300bp
MRLHAQTFLALSAHLFTFPSTRTSFLQAGTGALLGVPSSALAKLDGRYMT
GTGYADNFKVPHPIYESSEVAFPESLLRPVCANLAEDAAALNYIVQKLIF
RELQSSTFQVNTVQVETDSRSVFSNVGRLLRKPGAVRDVAVRRDLVNHAC
NYYHGVLFVKGLAPSKRRTAAAPLEGTPLAQALQYHSGQASTPRPFLLER
LAEMIAAAVDGSECGWCCLWRRNGGSNAVMPVFCRAGDSKLVNGEGRPVL
VFPVLPDLRPEYGDDPRELVYRWWDEGVNWKTTQEIFDGADATQIFYSL*
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mRNA from alignment at P-wetherbeei_contig5793:600..2714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5793.1.1 ID=mRNA_P-wetherbeei_contig5793.1.1|Name=mRNA_P-wetherbeei_contig5793.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2115bp|location=Sequence derived from alignment at P-wetherbeei_contig5793:600..2714+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGCGCGAGTACGGCCACGCCCTGGATGTCCACCACCACCACCCGCCGC
CGTCCTGGGTAGCAAGCGCAGCGCCGGCAGCAGCGGCGGCGGCGGGGGCA
GCGGTGGCGGCTGGGGCCGGAGCCGGAGCCGGAGCGGCGAGAGTTGCGAT
CGCGCCGGCAGTGGCAGCAATGCCGGGCTCGGTGGGGACGGCAGTGACGA
GCAGTGATGCTGCCGCCGGCGCAGACGTGGCCGCCCTTGTGGCCACGGTC
GAGCAGCAGGCGCGAGAGCTGGCGGCGCTGAAGGAGGTGGTGGGACGGCT
GGCGCAGACGCATGTCAAGTTCGAGGGGCAGGTGATGGAACTCACGAACC
GCGTCCGGGCACTCGAGGCGGGCAAAACGCCAGTGAAGCCCAACTGGGCG
AAGTGAGCATGCTTGGGGGCGGGTGCTAAGGTGGACGGTGAGTGACCTTG
TACTGGATGTTTGCGGGACGATGGCAGGATTCTTCTCGATGACCCCTCCC
TTAGGGACGTGAAAAGCGGCATCACAAGAGAAATAAAGCATCCAGGGTAT
GGTGTAGATAACCCCTGAGACTCTTTTTGAGGGATTTTGCAGCATCGAAG
CAACCCCAAATGCGACTGCACGCACAGACGTTCCTCGCATTATCAGCACA
TCTTTTCACTTTTCCCTCGACACGGACAAGTTTCTTACAAGCGGGAACGG
GGGCCCTGTTAGGCGTGCCGTCATCGGCACTCGCAAAGCTTGATGGACGG
TACATGACCGGCACAGGCTACGCCGATAATTTCAAAGTTCCACATCCAAT
CTACGAATCGAGCGAGGTGGCGTTTCCTGAATCGCTGTTGCGGCCGGTGT
GCGCAAATCTCGCGGAAGACGCCGCTGCTCTTAACTACATCGTCCAAAAA
CTGATCTTCCGCGAACTGCAGAGCTCAACATTTCAGGTACGATGAAGGTC
AGCCCTAGCAAACGAAAGGTAAATGCTGAAAACTTCGCGAACTCACTAAG
CAACGATAGCTTGTACTATGCCGCGAAGTTCCTTACTGAAGCATCACTTC
CCGCCGCAAATGCCAAAAAACCTGGATACAGGTAAACACGGTGCAGGTAG
AAACCGACTCGCGATCGGTGTTTTCAAACGTTGGGCGGCTGCTTCGAAAG
CCAGGAGCAGTGCGGGACGTTGCCGTGCGGCGCGACCTTGTAAACCACGC
CTGCAATTATTACCATGGCGTCCTTTTTGTCAAGGGGCTGGCCCCGTCCA
AGCGGCGCACGGCAGCAGCTCCGCTCGAGGGAACGCCACTTGCACAAGCT
CTGCAATACCACTCGGGGCAGGCATCCACACCGCGGCCGTTCCTGCTTGA
GCGTCTGGCAGAGATGATAGCGGCGGCTGTCGATGGCAGCGAGTGCGGCT
GGTGCTGCCTATGGCGAAGAAACGGGGGATCGAATGCGGTGATGCCGGTG
TTCTGCCGGGCGGGCGATTCAAAGTTGGTGAATGGAGAAGGTCGACCGGT
GCTCGTGTTTCCGGTGCTGCCGGACCTGCGGCCGGAGTACGGCGACGACC
CACGGGAGCTCGTGTACAGGTGGTGGGACGAGGGCGTGAACTGGAAGACG
ACTCAGGAGATTTTTGACGGCGCCGACGCCACGCAAATATTTTACAGCCT
ATAAGTAGCGGGATGATAACGTGGCAGCGTTGGGTTGCGCAGGCCATCCT
CTGCGGTACCTCTGCGCCGAAGCTCAAGCGTATCTCTGTATCAAGTGGAG
GAGAAATAGGCCATATACGGGCAAGGGGAGCAGAGATGTTAACCTCATAA
CTCTCTTCGCGAACTATAGCTGGAATGGTGCACAGAAATGAGAGAAAAGG
AAGGAGAGAGTAAATTTGTTTCTTTTTACGGAACTACTTGTTTCATGCGA
TGCTGGTACTTCCCTGCCAAGCCCTCATCGAGTCTCGATGACGGCATACC
ATCCACCTCTTTTGGCATGTTCAGTCCAACTCGCGCCGCGCTCTTTGTGA
TGCGCTCGCGCTGCGTCATCTTCTCACCATTATAGAGATCCACAAGGACC
TTGCGCTCGGCGACAGCGGCCAACATTCGCACCACGTCCCCGCCCTGCCA
TTGCAATCGTCGCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5793:600..2714+

>mRNA_P-wetherbeei_contig5793.1.1 ID=mRNA_P-wetherbeei_contig5793.1.1|Name=mRNA_P-wetherbeei_contig5793.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=900bp|location=Sequence derived from alignment at P-wetherbeei_contig5793:600..2714+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGACTGCACGCACAGACGTTCCTCGCATTATCAGCACATCTTTTCAC
TTTTCCCTCGACACGGACAAGTTTCTTACAAGCGGGAACGGGGGCCCTGT
TAGGCGTGCCGTCATCGGCACTCGCAAAGCTTGATGGACGGTACATGACC
GGCACAGGCTACGCCGATAATTTCAAAGTTCCACATCCAATCTACGAATC
GAGCGAGGTGGCGTTTCCTGAATCGCTGTTGCGGCCGGTGTGCGCAAATC
TCGCGGAAGACGCCGCTGCTCTTAACTACATCGTCCAAAAACTGATCTTC
CGCGAACTGCAGAGCTCAACATTTCAGGTAAACACGGTGCAGGTAGAAAC
CGACTCGCGATCGGTGTTTTCAAACGTTGGGCGGCTGCTTCGAAAGCCAG
GAGCAGTGCGGGACGTTGCCGTGCGGCGCGACCTTGTAAACCACGCCTGC
AATTATTACCATGGCGTCCTTTTTGTCAAGGGGCTGGCCCCGTCCAAGCG
GCGCACGGCAGCAGCTCCGCTCGAGGGAACGCCACTTGCACAAGCTCTGC
AATACCACTCGGGGCAGGCATCCACACCGCGGCCGTTCCTGCTTGAGCGT
CTGGCAGAGATGATAGCGGCGGCTGTCGATGGCAGCGAGTGCGGCTGGTG
CTGCCTATGGCGAAGAAACGGGGGATCGAATGCGGTGATGCCGGTGTTCT
GCCGGGCGGGCGATTCAAAGTTGGTGAATGGAGAAGGTCGACCGGTGCTC
GTGTTTCCGGTGCTGCCGGACCTGCGGCCGGAGTACGGCGACGACCCACG
GGAGCTCGTGTACAGGTGGTGGGACGAGGGCGTGAACTGGAAGACGACTC
AGGAGATTTTTGACGGCGCCGACGCCACGCAAATATTTTACAGCCTATAA
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