mRNA_P-wetherbeei_contig57900.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57900.1.1
Unique NamemRNA_P-wetherbeei_contig57900.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57900.1.1 vs. uniprot
Match: A0A508TX89_9BRAD (Adenylate cyclase 2 n=3 Tax=Bradyrhizobium TaxID=374 RepID=A0A508TX89_9BRAD)

HSP 1 Score: 158 bits (399), Expect = 1.210e-41
Identity = 90/168 (53.57%), Postives = 113/168 (67.26%), Query Frame = 1
Query:    1 AASVLGQRFSLDVLRRLLGNAAYDCTSLLTENLVRPMGDAFLFAHALIWESTYLSLVSDDKRRWHASAAQWFANSDPALAAEHLDRAGDPGAVAAYLAAAREERRQSHFEQALRLLDRGLELALDPREKFTLLVERGEQLPDLGRSDEAIRDFEQALALAGDDGERCR 504
            AASVLGQRFSLDVLR L+ N  Y CT  + ++LVR  GD FLF+HAL+ E+ Y SL++ ++R  H  AA  FA SD  L A HLDRA DP A  AYL AAR +    H E+ALRL++RG  LA++  + + L+  RGE L DLG   EA + FEQAL +AGDD E C+
Sbjct:  563 AASVLGQRFSLDVLRHLVNNDKYVCTRFIEQDLVRSDGDDFLFSHALVQEAVYSSLLTANRRELHRQAAACFAESDSMLRAAHLDRAADPSAPQAYLLAARSQAAAYHNERALRLVERGHALAVEQADIYALIHFRGELLHDLGAIPEARQAFEQALEVAGDDIESCQ 730          
BLAST of mRNA_P-wetherbeei_contig57900.1.1 vs. uniprot
Match: UPI0019F35A00 (Tetratricopeptide repeat protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019F35A00)

HSP 1 Score: 155 bits (391), Expect = 1.430e-40
Identity = 84/163 (51.53%), Postives = 109/163 (66.87%), Query Frame = 1
Query:    1 AASVLGQRFSLDVLRRLLGNAAYDCTSLLTENLVRPMGDAFLFAHALIWESTYLSLVSDDKRRWHASAAQWFANSDPALAAEHLDRAGDPGAVAAYLAAAREERRQSHFEQALRLLDRGLELALDPREKFTLLVERGEQLPDLGRSDEAIRDFEQALALAGDD 489
            AA++LG+RF L+VLR LLGN +Y C +L+   L+RP GD FLFAHALI ES   SL+   +R  H  AA W+ + D  L AEHLDRA D  A  AYL AAR E  +  F++ L L+DRGLELA++  ++F L+ +RG+ L DLG  +E+I  F QA  LA DD
Sbjct:  544 AAAILGERFGLEVLRTLLGNPSYKCDALMNHALLRPEGDGFLFAHALIRESVGASLLKTTRRELHERAAGWYEDQDAVLFAEHLDRAADARAPRAYLEAARAEAGEYRFDRVLELVDRGLELAVENADRFALICQRGDFLRDLGAVEESIAAFRQATELAVDD 706          
BLAST of mRNA_P-wetherbeei_contig57900.1.1 vs. uniprot
Match: I3X4Z2_SINF2 (Adenylate/guanylate cyclase n=2 Tax=Rhizobium fredii TaxID=380 RepID=I3X4Z2_SINF2)

HSP 1 Score: 152 bits (385), Expect = 6.690e-40
Identity = 87/169 (51.48%), Postives = 108/169 (63.91%), Query Frame = 1
Query:    1 AASVLGQRFSLDVLRRLLGNAAYDCTSLLTENLVRPMGDAFLFAHALIWESTYLSLVSDDKRRWHASAAQWFA-NSDPALAAEHLDRAGDPGAVAAYLAAAREERRQSHFEQALRLLDRGLELALDPREKFTLLVERGEQLPDLGRSDEAIRDFEQALALAGDDGERCR 504
            AASVLGQRF L  LR L+GN  Y  + L    L+RP GDA LF HALI ++ Y +L+ + +R  H +AA+WFA N DP L AEHLDRA DP A AAYL A R       +E ALRL DRGLE+A+ P E++ L   R E L  LGR  EA+  ++ AL  A +D +RCR
Sbjct:  271 AASVLGQRFDLLALRCLIGNPHYQPSQLFEHRLLRPYGDAILFGHALIRDAVYETLLRNKRRDLHLAAAEWFAANDDPVLRAEHLDRAEDPRAAAAYLVAVRRLVESYRYESALRLADRGLEIAVAPGERYELAFARAELLEQLGRVREAVAAYDLALTTAMNDRDRCR 439          
BLAST of mRNA_P-wetherbeei_contig57900.1.1 vs. uniprot
Match: A0A1Y5TYI6_9PROT (Adenylate cyclase 2 n=1 Tax=Oceanibacterium hippocampi TaxID=745714 RepID=A0A1Y5TYI6_9PROT)

HSP 1 Score: 152 bits (385), Expect = 9.220e-40
Identity = 84/168 (50.00%), Postives = 106/168 (63.10%), Query Frame = 1
Query:    1 AASVLGQRFSLDVLRRLLGNAAYDCTSLLTENLVRPMGDAFLFAHALIWESTYLSLVSDDKRRWHASAAQWFANSDPALAAEHLDRAGDPGAVAAYLAAAREERRQSHFEQALRLLDRGLELALDPREKFTLLVERGEQLPDLGRSDEAIRDFEQALALAGDDGERCR 504
            AASVLGQRFSLD LR L  + +Y C  LL  +L +P  + +LFAHAL+ E  Y SL++  +   H +AA W+   DPAL AEHLDRAGD  A AAYL AAR      HFE AL L  RG+EL  D   +F L+  RG+ L ++G ++E+I  FE A   A DD +RCR
Sbjct:  565 AASVLGQRFSLDALRHLTESPSYRCDQLLARHLFKPEREGYLFAHALVQEGVYASLLTSRRVALHRAAAAWYGQQDPALRAEHLDRAGDKAAAAAYLEAARTRIAALHFETALSLTGRGIELVDDAATRFELMCLRGDSLRNVGSTEESIAAFESARDSAEDDVQRCR 732          
BLAST of mRNA_P-wetherbeei_contig57900.1.1 vs. uniprot
Match: UPI001A06ED97 (Tetratricopeptide repeat protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI001A06ED97)

HSP 1 Score: 149 bits (377), Expect = 1.100e-38
Identity = 83/163 (50.92%), Postives = 106/163 (65.03%), Query Frame = 1
Query:    1 AASVLGQRFSLDVLRRLLGNAAYDCTSLLTENLVRPMGDAFLFAHALIWESTYLSLVSDDKRRWHASAAQWFANSDPALAAEHLDRAGDPGAVAAYLAAAREERRQSHFEQALRLLDRGLELALDPREKFTLLVERGEQLPDLGRSDEAIRDFEQALALAGDD 489
            AAS+LGQRF L+VLR LL + +YDC SLL   L+RP G+ FLFAHALI E    SL+   +R  H  AA W+A+ D  L AEHLDRA D  A  AYL AAR E  +  F++ L + DRGLELA +  ++F L+ +RG+ L +LG  + +I  F QA  LA DD
Sbjct:  547 AASILGQRFGLEVLRSLLDSPSYDCASLLKHALLRPAGEDFLFAHALIREGVNASLLKTTRRELHQRAANWYADRDAVLFAEHLDRARDARAPRAYLEAARAEAAEYRFDRVLEIADRGLELATENTDRFALVCQRGDFLRELGSVEGSIAAFRQAAELAEDD 709          
BLAST of mRNA_P-wetherbeei_contig57900.1.1 vs. uniprot
Match: A0A8B3M7P4_RHIML (Adenylate/guanylate cyclase domain-containing protein n=2 Tax=Rhizobium meliloti TaxID=382 RepID=A0A8B3M7P4_RHIML)

HSP 1 Score: 148 bits (374), Expect = 2.770e-38
Identity = 84/169 (49.70%), Postives = 109/169 (64.50%), Query Frame = 1
Query:    1 AASVLGQRFSLDVLRRLLGNAAYDCTSLLTENLVRPMGDAFLFAHALIWESTYLSLVSDDKRRWHASAAQWFA-NSDPALAAEHLDRAGDPGAVAAYLAAAREERRQSHFEQALRLLDRGLELALDPREKFTLLVERGEQLPDLGRSDEAIRDFEQALALAGDDGERCR 504
            AASVLGQRF L  LR L+ + +Y  + L    L+RP GDA LF HALI ++ Y +L+ + +R  H +AA+WFA N DP L AEHLDRA DPGA AAY+AA R       +E ALRL DRGLE+ + P E++ L + R E L  LGR  EA+  ++ A+  A D+ E CR
Sbjct:  561 AASVLGQRFDLMALRCLIQSPSYQPSQLFEHRLLRPYGDAILFGHALIRDAVYETLLRNKRRDLHLAAAEWFAANDDPVLRAEHLDRAEDPGAAAAYMAAVRLLVESYRYESALRLADRGLEIGVAPGERYELALYRAELLEKLGRVPEAVAAYDLAMTAAMDERECCR 729          
BLAST of mRNA_P-wetherbeei_contig57900.1.1 vs. uniprot
Match: A0A3N6MU04_9BURK (Adenylate/guanylate cyclase domain-containing protein n=2 Tax=Paraburkholderia TaxID=1822464 RepID=A0A3N6MU04_9BURK)

HSP 1 Score: 146 bits (368), Expect = 1.780e-37
Identity = 86/168 (51.19%), Postives = 106/168 (63.10%), Query Frame = 1
Query:    1 AASVLGQRFSLDVLRRLLGNAAYDCTSLLTENLVRPMGDAFLFAHALIWESTYLSLVSDDKRRWHASAAQWFANSDPALAAEHLDRAGDPGAVAAYLAAAREERRQSHFEQALRLLDRGLELALDPREKFTLLVERGEQLPDLGRSDEAIRDFEQALALAGDDGERCR 504
            AA+V+GQRF +D+LRRL+ + +Y C  L+   LV P GD FLFAHALI ES Y +L+   +R  H  AA+WFA+SDP L A+HLDRA D  A AAYLAAA   R     E ALRL +RGLELA    +   L+  +GE   DLG    +I  +  ALA A DD  RCR
Sbjct:  556 AAAVIGQRFGIDLLRRLVDDRSYVCDGLIVNALVVPEGDDFLFAHALIQESAYSTLLRARRRELHQRAAEWFAHSDPTLHAQHLDRAEDERAPAAYLAAALALRAAHLIEAALRLAERGLELARTDMDHHELICCKGELQRDLGDIAGSIATYRAALAAAPDDAARCR 723          
BLAST of mRNA_P-wetherbeei_contig57900.1.1 vs. uniprot
Match: UPI000D3649FE (AAA family ATPase n=2 Tax=Bradyrhizobium TaxID=374 RepID=UPI000D3649FE)

HSP 1 Score: 145 bits (366), Expect = 3.310e-37
Identity = 84/168 (50.00%), Postives = 105/168 (62.50%), Query Frame = 1
Query:    1 AASVLGQRFSLDVLRRLLGNAAYDCTSLLTENLVRPMGDAFLFAHALIWESTYLSLVSDDKRRWHASAAQWFANSDPALAAEHLDRAGDPGAVAAYLAAAREERRQSHFEQALRLLDRGLELALDPREKFTLLVERGEQLPDLGRSDEAIRDFEQALALAGDDGERCR 504
            AAS+LGQRF+ + L  LL    ++C  L+   LVRP GD FLFAHALI E  Y +L+   +R  H  AA+WF + D  L A+HLDRA D  A  AYL AAR +  +   E+ALRL++RGL LA    +   L + RGE L DLG   E+I  FEQALA+A  D ERCR
Sbjct:  572 AASILGQRFTAEALAALLDQPGWNCADLMRHRLVRPQGDHFLFAHALIQEGVYDTLLRSRRRELHRRAAEWFRSRDLTLCAQHLDRADDEYAPRAYLEAARAQAAEYRTERALRLVERGLVLARKRADVSALSLLRGEMLHDLGSISESIAAFEQALAVADVDIERCR 739          
BLAST of mRNA_P-wetherbeei_contig57900.1.1 vs. uniprot
Match: A0A149PJF2_9BURK (Guanylate cyclase n=4 Tax=Paraburkholderia TaxID=1822464 RepID=A0A149PJF2_9BURK)

HSP 1 Score: 144 bits (364), Expect = 6.150e-37
Identity = 84/167 (50.30%), Postives = 104/167 (62.28%), Query Frame = 1
Query:    1 AASVLGQRFSLDVLRRLLGNAAYDCTSLLTENLVRPMGDAFLFAHALIWESTYLSLVSDDKRRWHASAAQWFANSDPALAAEHLDRAGDPGAVAAYLAAAREERRQSHFEQALRLLDRGLELALDPREKFTLLVERGEQLPDLGRSDEAIRDFEQALALAGDDGERC 501
            AA+V+GQRF L +LRRL+ +  Y C  LL   LV P G+ FLFAHALI E  + +L+   +R  H  AA+WFA+SDP L A+HLDRA D  A AAYLAAA  +R    FE ALRL DRGLE+A    ++  L   +GE   DLG    +I  +  ALA A DD  RC
Sbjct:  566 AAAVIGQRFDLALLRRLIDDPDYVCDGLLANALVLPEGEDFLFAHALIQEGAWATLLRARRRELHRCAAEWFAHSDPTLHAQHLDRAEDERARAAYLAAAAAQRAAHRFEAALRLADRGLEIARTDTDRHALSCAKGELQRDLGDIAGSIATYRAALAAATDDDARC 732          
BLAST of mRNA_P-wetherbeei_contig57900.1.1 vs. uniprot
Match: A0A1H1FI63_9HYPH (Tetratricopeptide repeat-containing protein n=3 Tax=unclassified Hyphomicrobiales TaxID=41292 RepID=A0A1H1FI63_9HYPH)

HSP 1 Score: 144 bits (362), Expect = 1.140e-36
Identity = 82/168 (48.81%), Postives = 104/168 (61.90%), Query Frame = 1
Query:    1 AASVLGQRFSLDVLRRLLGNAAYDCTSLLTENLVRPMGDAFLFAHALIWESTYLSLVSDDKRRWHASAAQWFANSDPALAAEHLDRAGDPGAVAAYLAAAREERRQSHFEQALRLLDRGLELALDPREKFTLLVERGEQLPDLGRSDEAIRDFEQALALAGDDGERCR 504
            AASV+GQRF L +LR+L+    Y C  LLT  LV P GD FLFAHALI E  Y SL+   +R  H  AA+WFA  DPAL A+HLDRAGD  A  AYL AA  +R   H + ALRL +RGLE+  D  E++ L+  +G+   DLG    +I  + QA+A   ++   CR
Sbjct:  563 AASVIGQRFELPLLRKLIDVPDYVCDGLLTHALVLPEGDGFLFAHALIQEGAYSSLLRARRRDLHRIAAEWFAALDPALRAQHLDRAGDERAPRAYLEAAASQRLAYHADAALRLAERGLEIVRDDDERYELICLKGKLQRDLGDITASIASYRQAIAAVSNEVNLCR 730          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57900.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A508TX89_9BRAD1.210e-4153.57Adenylate cyclase 2 n=3 Tax=Bradyrhizobium TaxID=3... [more]
UPI0019F35A001.430e-4051.53Tetratricopeptide repeat protein n=1 Tax=Proteobac... [more]
I3X4Z2_SINF26.690e-4051.48Adenylate/guanylate cyclase n=2 Tax=Rhizobium fred... [more]
A0A1Y5TYI6_9PROT9.220e-4050.00Adenylate cyclase 2 n=1 Tax=Oceanibacterium hippoc... [more]
UPI001A06ED971.100e-3850.92Tetratricopeptide repeat protein n=1 Tax=Proteobac... [more]
A0A8B3M7P4_RHIML2.770e-3849.70Adenylate/guanylate cyclase domain-containing prot... [more]
A0A3N6MU04_9BURK1.780e-3751.19Adenylate/guanylate cyclase domain-containing prot... [more]
UPI000D3649FE3.310e-3750.00AAA family ATPase n=2 Tax=Bradyrhizobium TaxID=374... [more]
A0A149PJF2_9BURK6.150e-3750.30Guanylate cyclase n=4 Tax=Paraburkholderia TaxID=1... [more]
A0A1H1FI63_9HYPH1.140e-3648.81Tetratricopeptide repeat-containing protein n=3 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57900contigP-wetherbeei_contig57900:3..506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1185652.USDA257_c23710
PFAMsAAA_16,BTAD,DZR,Guanylate_cyc,SAM_2,TPR_12
Model size504
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.1e-40
EggNOG OGsCOG0457@1|root,COG3899@1|root,COG0457@2|Bacteria,COG3899@2|Bacteria,1MUDT@1224|Proteobacteria,2TQVN@28211|Alphaproteobacteria,4B81Q@82115|Rhizobiaceae
DescriptionAdenylate
Cds size504
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186858.487903-CDS-P-wetherbeei_contig57900:2..5061683186858.487903-CDS-P-wetherbeei_contig57900:2..506Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57900 3..506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57900.1.1prot_P-wetherbeei_contig57900.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57900 3..506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57900.1.1

>prot_P-wetherbeei_contig57900.1.1 ID=prot_P-wetherbeei_contig57900.1.1|Name=mRNA_P-wetherbeei_contig57900.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
AASVLGQRFSLDVLRRLLGNAAYDCTSLLTENLVRPMGDAFLFAHALIWE
STYLSLVSDDKRRWHASAAQWFANSDPALAAEHLDRAGDPGAVAAYLAAA
REERRQSHFEQALRLLDRGLELALDPREKFTLLVERGEQLPDLGRSDEAI
RDFEQALALAGDDGERCR
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mRNA from alignment at P-wetherbeei_contig57900:3..506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57900.1.1 ID=mRNA_P-wetherbeei_contig57900.1.1|Name=mRNA_P-wetherbeei_contig57900.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig57900:3..506+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGAGCGTGCTGGGTCAAAGATTTTCGCTGGATGTGTTGCGCCGGCT TCTTGGCAATGCGGCCTATGACTGCACTTCGCTGCTGACCGAGAATCTGG TCAGGCCGATGGGAGATGCTTTCCTCTTCGCTCACGCGCTCATCTGGGAG AGTACCTATCTTTCACTGGTGAGCGACGATAAACGGCGCTGGCATGCGAG CGCCGCACAGTGGTTTGCAAACTCGGACCCGGCGCTCGCGGCCGAACATC TGGATCGTGCCGGAGACCCCGGGGCCGTCGCGGCGTATCTGGCTGCCGCG CGCGAGGAAAGGCGACAGAGTCACTTCGAACAGGCACTGCGCCTGCTGGA TCGGGGACTGGAACTGGCGTTGGACCCGCGCGAAAAATTCACCTTGCTGG TGGAGCGCGGCGAGCAACTGCCGGACCTGGGCCGCTCCGACGAGGCGATC CGTGACTTTGAGCAGGCGCTGGCGCTGGCTGGCGATGATGGTGAGCGCTG CAGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57900:3..506+

>mRNA_P-wetherbeei_contig57900.1.1 ID=mRNA_P-wetherbeei_contig57900.1.1|Name=mRNA_P-wetherbeei_contig57900.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig57900:3..506+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGAGCGTGCTGGGTCAAAGATTTTCGCTGGATGTGTTGCGCCGGCT
TCTTGGCAATGCGGCCTATGACTGCACTTCGCTGCTGACCGAGAATCTGG
TCAGGCCGATGGGAGATGCTTTCCTCTTCGCTCACGCGCTCATCTGGGAG
AGTACCTATCTTTCACTGGTGAGCGACGATAAACGGCGCTGGCATGCGAG
CGCCGCACAGTGGTTTGCAAACTCGGACCCGGCGCTCGCGGCCGAACATC
TGGATCGTGCCGGAGACCCCGGGGCCGTCGCGGCGTATCTGGCTGCCGCG
CGCGAGGAAAGGCGACAGAGTCACTTCGAACAGGCACTGCGCCTGCTGGA
TCGGGGACTGGAACTGGCGTTGGACCCGCGCGAAAAATTCACCTTGCTGG
TGGAGCGCGGCGAGCAACTGCCGGACCTGGGCCGCTCCGACGAGGCGATC
CGTGACTTTGAGCAGGCGCTGGCGCTGGCTGGCGATGATGGTGAGCGCTG
CAGA
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