mRNA_P-wetherbeei_contig579.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig579.4.1
Unique NamemRNA_P-wetherbeei_contig579.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig579.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig579contigP-wetherbeei_contig579:5498..6552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size919
Hectar predicted targeting categorysignal anchor
Exons2
Cds size558
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186858.3017306-UTR-P-wetherbeei_contig579:5497..55561683186858.3017306-UTR-P-wetherbeei_contig579:5497..5556Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig579 5498..5556 -
1683186858.3306162-UTR-P-wetherbeei_contig579:6250..65521683186858.3306162-UTR-P-wetherbeei_contig579:6250..6552Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig579 6251..6552 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186858.3114002-CDS-P-wetherbeei_contig579:5556..59931683186858.3114002-CDS-P-wetherbeei_contig579:5556..5993Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig579 5557..5993 -
1683186858.3208199-CDS-P-wetherbeei_contig579:6129..62501683186858.3208199-CDS-P-wetherbeei_contig579:6129..6250Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig579 6130..6250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig579.4.1prot_P-wetherbeei_contig579.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig579 5557..6250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig579.4.1

>prot_P-wetherbeei_contig579.4.1 ID=prot_P-wetherbeei_contig579.4.1|Name=mRNA_P-wetherbeei_contig579.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
MQSYGTISVENEDRQQFLVSEAEAVVKCRGSCSWVEGALQGTSKQPRKRM
ALRFMFFPVLALVFTAAVLTSRAFSASGDSSVVRRSPPGGTAGHSNPRAG
DVSNATTSDGGARGGSGDGSTSDAKGGGNNAGAGDGGRAAAGDDGGGGGG
GSGGAGKNTASGKKPQTYITGETAATAVGLGVRSA*
back to top

mRNA from alignment at P-wetherbeei_contig579:5498..6552-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig579.4.1 ID=mRNA_P-wetherbeei_contig579.4.1|Name=mRNA_P-wetherbeei_contig579.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1055bp|location=Sequence derived from alignment at P-wetherbeei_contig579:5498..6552- (Phaeothamnion wetherbeei SAG_119_79)
GGAACGAAGTCTAAAATTGCAGCCTTCCGGCCTTCCCACCTCTTTGATAT
CGTACCACCTCTCTTTAATGATACCACTGCGACACGTTGCCGCTTAGCAA
CGGCTGTACTGGAAGCGCGAAGCTCTTACCTTTCACCTGAGGATCATCGA
AATTACGATCCCACTTCCCTACTTTCCCCTGCAATCGACTGACGTAAAGG
CCCTTCCGCTGGGCCGGCAGAAGGCATCGAGGGCGAACACAAGCCGCTGC
CAAGTTCTTTTGGGCGCTGGCGAAAACCAGCTCCTGATAGCGTGCAGCTT
CCATGCAATCTTACGGCACCATTTCTGTTGAGAATGAGGACCGACAGCAG
TTCCTCGTCTCAGAGGCGGAAGCGGTTGTAAAGTGTCGAGGCTCTTGCTC
TTGGGTCGAAGGCGCACTACAAGGTAAGGGTTTTTACATCCACCATTTCA
GTCGTCCATTTCTCCTTCAAACTCGCTGTTTTTGTGAGGCTCACCAGGAC
TCCGTTCCGCACCTGTTACATGCCGGTCACAAAACCATACGGCACTCGCT
CCTTTGCAGGCACGAGCAAGCAGCCTCGGAAGCGCATGGCGCTCCGCTTT
ATGTTCTTCCCAGTCCTCGCTCTCGTCTTCACGGCGGCCGTCTTGACGTC
GCGAGCGTTCTCCGCCAGCGGTGACAGCAGTGTCGTGCGGAGGAGCCCCC
CCGGCGGCACCGCCGGCCACAGCAACCCCCGCGCCGGCGATGTGTCCAAC
GCGACCACCAGCGATGGCGGCGCTCGAGGCGGGAGCGGCGACGGGTCGAC
AAGCGACGCGAAAGGCGGCGGTAACAATGCGGGCGCAGGCGATGGTGGCC
GTGCCGCTGCCGGCGACGACGGCGGCGGTGGTGGCGGCGGCAGCGGCGGG
GCCGGCAAAAACACCGCTTCTGGCAAGAAGCCACAAACATATATTACTGG
AGAAACAGCGGCAACGGCAGTCGGCTTAGGTGTTAGAAGCGCTTGAAGGT
TGTGAAGGTACGATAGAAGATAACGATTATTCTTAATCAGATTTGTGATT
AGCTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig579:5498..6552-

>mRNA_P-wetherbeei_contig579.4.1 ID=mRNA_P-wetherbeei_contig579.4.1|Name=mRNA_P-wetherbeei_contig579.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig579:5498..6552- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAATCTTACGGCACCATTTCTGTTGAGAATGAGGACCGACAGCAGTT
CCTCGTCTCAGAGGCGGAAGCGGTTGTAAAGTGTCGAGGCTCTTGCTCTT
GGGTCGAAGGCGCACTACAAGGCACGAGCAAGCAGCCTCGGAAGCGCATG
GCGCTCCGCTTTATGTTCTTCCCAGTCCTCGCTCTCGTCTTCACGGCGGC
CGTCTTGACGTCGCGAGCGTTCTCCGCCAGCGGTGACAGCAGTGTCGTGC
GGAGGAGCCCCCCCGGCGGCACCGCCGGCCACAGCAACCCCCGCGCCGGC
GATGTGTCCAACGCGACCACCAGCGATGGCGGCGCTCGAGGCGGGAGCGG
CGACGGGTCGACAAGCGACGCGAAAGGCGGCGGTAACAATGCGGGCGCAG
GCGATGGTGGCCGTGCCGCTGCCGGCGACGACGGCGGCGGTGGTGGCGGC
GGCAGCGGCGGGGCCGGCAAAAACACCGCTTCTGGCAAGAAGCCACAAAC
ATATATTACTGGAGAAACAGCGGCAACGGCAGTCGGCTTAGGTGTTAGAA
GCGCTTGA
back to top