mRNA_P-wetherbeei_contig57868.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57868.1.1
Unique NamemRNA_P-wetherbeei_contig57868.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57868.1.1 vs. uniprot
Match: A0A2D8YNI1_9HYPH (Enoyl-CoA hydratase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2D8YNI1_9HYPH)

HSP 1 Score: 140 bits (353), Expect = 3.060e-39
Identity = 70/107 (65.42%), Postives = 85/107 (79.44%), Query Frame = 1
Query:   40 DDRSVRLLTMNRPEKRNALDNELTQILLGALEAAEAEEGIRAIVLTGTAPAFCAGADTAEFKHLTGDNKDLVEKRAELTTRLHSIFPQMTKPVVTAINGAAMGGGAG 360
            DD SVR+LTMNRP+K NALD ELT+ L+ ALE A+  +G+RA+VLTG    FCAGADT+EFK LT DN D VE+RA LT RLH++ PQM+ PV+ A+NG AMGGGAG
Sbjct:    9 DDGSVRILTMNRPDKLNALDFELTRALVAALEEADDNDGVRAVVLTGAGRGFCAGADTSEFKTLTPDNSDRVEERARLTARLHAVIPQMSTPVIGAVNGFAMGGGAG 115          
BLAST of mRNA_P-wetherbeei_contig57868.1.1 vs. uniprot
Match: A0A327LDG3_9HYPH (Enoyl-CoA hydratase n=1 Tax=Rhodoplanes roseus TaxID=29409 RepID=A0A327LDG3_9HYPH)

HSP 1 Score: 137 bits (346), Expect = 3.200e-38
Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 1
Query:   19 MSKLTIIDDRSVRLLTMNRPEKRNALDNELTQILLGALEAAEAEEGIRAIVLTGTAPAFCAGADTAEFKHLTGDNKDLVEKRAELTTRLHSIFPQMTKPVVTAINGAAMGGGAG 360
            MS L      +VR+L +NRP KRNALDN LT  LL AL AA+A   + ++VLTG  PAFCAGAD +EFK LT +N+ LV++RAELT  LH IFP+MTKPV+TA+NG AMGGGAG
Sbjct:    1 MSDLLTETHGAVRVLVLNRPNKRNALDNRLTSALLEALRAADASPDVGSVVLTGAGPAFCAGADLSEFKLLTPENQHLVDRRAELTMTLHGIFPKMTKPVITAVNGPAMGGGAG 114          
BLAST of mRNA_P-wetherbeei_contig57868.1.1 vs. uniprot
Match: UPI000491DAFF (enoyl-CoA hydratase/isomerase family protein n=1 Tax=Azohydromonas australica TaxID=364039 RepID=UPI000491DAFF)

HSP 1 Score: 130 bits (328), Expect = 1.720e-35
Identity = 69/114 (60.53%), Postives = 85/114 (74.56%), Query Frame = 1
Query:   19 MSKLTIIDDRSVRLLTMNRPEKRNALDNELTQILLGALEAAEAEEGIRAIVLTGTAPAFCAGADTAEFKHLTGDNKDLVEKRAELTTRLHSIFPQMTKPVVTAINGAAMGGGAG 360
            M  L I D+ +VR+L MNRP+KRNAL+N LT+ L+ AL  AEA+EG+  +VLTG   AFCAGAD +EFK LT D    V++RAELT +LH  F +MTKPV+ AING AMGGGAG
Sbjct:    1 MDDLLINDEGNVRVLRMNRPDKRNALNNSLTRGLVQALAQAEADEGVHCVVLTGNGAAFCAGADISEFKDLTPDQMHRVDERAELTMQLHLSFSRMTKPVIAAINGFAMGGGAG 114          
BLAST of mRNA_P-wetherbeei_contig57868.1.1 vs. uniprot
Match: UPI000E31E96D (enoyl-CoA hydratase/isomerase family protein n=1 Tax=Pelagibacterium sediminicola TaxID=2248761 RepID=UPI000E31E96D)

HSP 1 Score: 130 bits (327), Expect = 2.500e-35
Identity = 68/111 (61.26%), Postives = 84/111 (75.68%), Query Frame = 1
Query:   28 LTIIDDRSVRLLTMNRPEKRNALDNELTQILLGALEAAEAEEGIRAIVLTGTAPAFCAGADTAEFKHLTGDNKDLVEKRAELTTRLHSIFPQMTKPVVTAINGAAMGGGAG 360
            L + D+ SVR+LTMNRPEK NAL+ +LT  L+ AL AA+A+  +RA+VLTG   +FCAGADT+EFK LT  N D V +RA LT RLH+I PQM  PV+ A+NG AMGGGAG
Sbjct:    5 LAVRDEGSVRVLTMNRPEKLNALNYDLTSALVNALVAADADSEVRAVVLTGEGRSFCAGADTSEFKTLTPQNADSVNERARLTGRLHAIIPQMGTPVIGAVNGFAMGGGAG 115          
BLAST of mRNA_P-wetherbeei_contig57868.1.1 vs. uniprot
Match: A0A504LGL3_9HYPH (Enoyl-CoA hydratase/isomerase family protein n=2 Tax=unclassified Mesorhizobium TaxID=325217 RepID=A0A504LGL3_9HYPH)

HSP 1 Score: 127 bits (320), Expect = 3.190e-34
Identity = 65/119 (54.62%), Postives = 93/119 (78.15%), Query Frame = 1
Query:    7 EKKTMSKLTIIDDRS-VRLLTMNRPEKRNALDNELTQILLGALEAAEAEEGIRAIVLTGTAPAFCAGADTAEFKHLTGDNKDLVEKRAELTTRLHSIFPQMTKPVVTAINGAAMGGGAG 360
            E+   + + I+++R+ VR++++NRP+K NALD ELTQ L  AL+AA+ + G+RAIVLTG   AFCAGAD +EFK LT  N+DLVEKRA+LT R  ++  +++KP+V+A+ GAA+GGGAG
Sbjct:    2 EQARQAPVLIVENRAAVRIVSLNRPDKLNALDTELTQALHDALQAADGDAGVRAIVLTGNGRAFCAGADLSEFKQLTPANQDLVEKRADLTCRTQAMMQKLSKPIVSAVRGAAVGGGAG 120          
BLAST of mRNA_P-wetherbeei_contig57868.1.1 vs. uniprot
Match: UPI0010F5808A (enoyl-CoA hydratase/isomerase family protein n=1 Tax=Mesorhizobium comanense TaxID=2502215 RepID=UPI0010F5808A)

HSP 1 Score: 127 bits (320), Expect = 3.190e-34
Identity = 64/119 (53.78%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    7 EKKTMSKLTIIDDRS-VRLLTMNRPEKRNALDNELTQILLGALEAAEAEEGIRAIVLTGTAPAFCAGADTAEFKHLTGDNKDLVEKRAELTTRLHSIFPQMTKPVVTAINGAAMGGGAG 360
            E+   + + +++DR  VR++ +NRP+K NALD ELTQ L  AL+AA+ +  +RAIVLTG   AFCAGAD +EF+HLT  N+DLVEKRA+LT R  ++  +++KPV++A+ GAA+GGGAG
Sbjct:    2 EQARQAPVLVVEDRGPVRVIALNRPDKLNALDTELTQALYDALQAADRDIAVRAIVLTGNGRAFCAGADLSEFRHLTPANQDLVEKRADLTCRTQAMMQKLSKPVISAVRGAAVGGGAG 120          
BLAST of mRNA_P-wetherbeei_contig57868.1.1 vs. uniprot
Match: A0A0F0FK40_9BURK (Enoyl-CoA hydratase n=1 Tax=Burkholderiaceae bacterium 16 TaxID=1619952 RepID=A0A0F0FK40_9BURK)

HSP 1 Score: 126 bits (317), Expect = 7.740e-34
Identity = 68/114 (59.65%), Postives = 83/114 (72.81%), Query Frame = 1
Query:   19 MSKLTIIDDRSVRLLTMNRPEKRNALDNELTQILLGALEAAEAEEGIRAIVLTGTAPAFCAGADTAEFKHLTGDNKDLVEKRAELTTRLHSIFPQMTKPVVTAINGAAMGGGAG 360
            M +L I D   VR+L MNRP KRNAL+N LT  L+ AL AAEA++ + A+VLTG  PAFCAGAD  EFK LT D  D V++RAELT +LH    +M+KPV+ A+NG AMGGGAG
Sbjct:    1 MDELLIEDVGRVRVLRMNRPGKRNALNNALTLGLVQALAAAEADDAVHAVVLTGNGPAFCAGADITEFKDLTPDQMDRVDERAELTMQLHLSVSRMSKPVIAAVNGFAMGGGAG 114          
BLAST of mRNA_P-wetherbeei_contig57868.1.1 vs. uniprot
Match: A0A316EPU3_9BURK (Enoyl-CoA hydratase/carnithine racemase n=5 Tax=Cupriavidus TaxID=106589 RepID=A0A316EPU3_9BURK)

HSP 1 Score: 125 bits (314), Expect = 2.180e-33
Identity = 68/114 (59.65%), Postives = 83/114 (72.81%), Query Frame = 1
Query:   19 MSKLTIIDDRSVRLLTMNRPEKRNALDNELTQILLGALEAAEAEEGIRAIVLTGTAPAFCAGADTAEFKHLTGDNKDLVEKRAELTTRLHSIFPQMTKPVVTAINGAAMGGGAG 360
            M++L I D   VR+L MNRPEKRNAL+N LT+ L+ AL AAEA++ +  +VLTG   AFCAGAD  EFK LT D    VE+RAELT +LH    +M+KPV+ AING AMGGGAG
Sbjct:    1 MNELLIEDVGQVRVLRMNRPEKRNALNNALTRGLVDALAAAEADDTVHVVVLTGNGAAFCAGADITEFKDLTPDQMSRVEERAELTMQLHLSVSRMSKPVIAAINGFAMGGGAG 114          
BLAST of mRNA_P-wetherbeei_contig57868.1.1 vs. uniprot
Match: A0A1G6QYS2_9BURK (Enoyl-CoA hydratase/carnithine racemase n=1 Tax=Cupriavidus sp. YR651 TaxID=1855315 RepID=A0A1G6QYS2_9BURK)

HSP 1 Score: 125 bits (314), Expect = 2.180e-33
Identity = 67/114 (58.77%), Postives = 82/114 (71.93%), Query Frame = 1
Query:   19 MSKLTIIDDRSVRLLTMNRPEKRNALDNELTQILLGALEAAEAEEGIRAIVLTGTAPAFCAGADTAEFKHLTGDNKDLVEKRAELTTRLHSIFPQMTKPVVTAINGAAMGGGAG 360
            M +L I D   VR+L MNRP KRNAL+N LT+ L+ AL AAEA++ +  +VLTG  PAFCAGAD +EFK LT D    VE RAELT +LH    +M+KPV+ A+NG AMGGGAG
Sbjct:    1 MDELLIEDVGHVRVLRMNRPAKRNALNNALTRGLVDALAAAEADDAVHVVVLTGNGPAFCAGADISEFKDLTPDQMSRVEDRAELTMQLHLSVSRMSKPVIAAVNGFAMGGGAG 114          
BLAST of mRNA_P-wetherbeei_contig57868.1.1 vs. uniprot
Match: A0A1I1GY91_9BURK (Enoyl-CoA hydratase/carnithine racemase n=2 Tax=Cupriavidus TaxID=106589 RepID=A0A1I1GY91_9BURK)

HSP 1 Score: 125 bits (314), Expect = 2.180e-33
Identity = 68/114 (59.65%), Postives = 82/114 (71.93%), Query Frame = 1
Query:   19 MSKLTIIDDRSVRLLTMNRPEKRNALDNELTQILLGALEAAEAEEGIRAIVLTGTAPAFCAGADTAEFKHLTGDNKDLVEKRAELTTRLHSIFPQMTKPVVTAINGAAMGGGAG 360
            MS+L I D   VR+L MNRPEKRNAL+N LT+ L+ AL AAEA++ +  +VLTG   AFCAGAD  EFK LT D    VE+RA LT +LH    +M+KPV+ AING AMGGGAG
Sbjct:    1 MSELQIEDVGQVRVLRMNRPEKRNALNNALTRGLVEALAAAEADDAVHVVVLTGNGSAFCAGADIGEFKDLTSDQMSRVEERAALTMQLHLSVSRMSKPVIAAINGFAMGGGAG 114          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57868.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8YNI1_9HYPH3.060e-3965.42Enoyl-CoA hydratase n=1 Tax=Hyphomicrobiales bacte... [more]
A0A327LDG3_9HYPH3.200e-3862.28Enoyl-CoA hydratase n=1 Tax=Rhodoplanes roseus Tax... [more]
UPI000491DAFF1.720e-3560.53enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
UPI000E31E96D2.500e-3561.26enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A504LGL3_9HYPH3.190e-3454.62Enoyl-CoA hydratase/isomerase family protein n=2 T... [more]
UPI0010F5808A3.190e-3453.78enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A0F0FK40_9BURK7.740e-3459.65Enoyl-CoA hydratase n=1 Tax=Burkholderiaceae bacte... [more]
A0A316EPU3_9BURK2.180e-3359.65Enoyl-CoA hydratase/carnithine racemase n=5 Tax=Cu... [more]
A0A1G6QYS2_9BURK2.180e-3358.77Enoyl-CoA hydratase/carnithine racemase n=1 Tax=Cu... [more]
A0A1I1GY91_9BURK2.180e-3359.65Enoyl-CoA hydratase/carnithine racemase n=2 Tax=Cu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57868contigP-wetherbeei_contig57868:147..506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog631454.N177_3075
PFAMsECH_1
Model size360
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115
KEGG koko:K01692
KEGG ReactionR03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093
KEGG Pathwayko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212
KEGG ModuleM00032,M00087
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.78e-33
EggNOG OGsCOG1024@1|root,COG1024@2|Bacteria,1MWZC@1224|Proteobacteria,2TRYS@28211|Alphaproteobacteria,1JNH3@119043|Rhodobiaceae
EC4.2.1.17
DescriptionPFAM Enoyl-CoA hydratase isomerase
Cds size360
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186857.6325626-CDS-P-wetherbeei_contig57868:146..5061683186857.6325626-CDS-P-wetherbeei_contig57868:146..506Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57868 147..506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57868.1.1prot_P-wetherbeei_contig57868.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57868 147..506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57868.1.1

>prot_P-wetherbeei_contig57868.1.1 ID=prot_P-wetherbeei_contig57868.1.1|Name=mRNA_P-wetherbeei_contig57868.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
MPEKKTMSKLTIIDDRSVRLLTMNRPEKRNALDNELTQILLGALEAAEAE
EGIRAIVLTGTAPAFCAGADTAEFKHLTGDNKDLVEKRAELTTRLHSIFP
QMTKPVVTAINGAAMGGGAG
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mRNA from alignment at P-wetherbeei_contig57868:147..506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57868.1.1 ID=mRNA_P-wetherbeei_contig57868.1.1|Name=mRNA_P-wetherbeei_contig57868.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig57868:147..506+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGAGAAGAAAACCATGTCAAAGCTCACGATAATAGATGATCGTTC CGTCAGGCTTCTGACCATGAACCGGCCGGAAAAGCGTAACGCCCTCGACA ATGAGTTGACGCAGATACTGCTCGGTGCGCTCGAGGCAGCCGAAGCCGAA GAAGGCATCAGGGCCATCGTCCTGACAGGTACTGCGCCGGCATTTTGTGC AGGTGCCGATACGGCCGAGTTCAAGCACCTGACCGGTGACAACAAGGACC TTGTCGAGAAGCGTGCGGAACTGACGACGCGCCTTCATTCGATTTTTCCC CAGATGACGAAGCCAGTGGTGACGGCGATCAACGGCGCTGCGATGGGCGG CGGTGCGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57868:147..506+

>mRNA_P-wetherbeei_contig57868.1.1 ID=mRNA_P-wetherbeei_contig57868.1.1|Name=mRNA_P-wetherbeei_contig57868.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig57868:147..506+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGAGAAGAAAACCATGTCAAAGCTCACGATAATAGATGATCGTTC
CGTCAGGCTTCTGACCATGAACCGGCCGGAAAAGCGTAACGCCCTCGACA
ATGAGTTGACGCAGATACTGCTCGGTGCGCTCGAGGCAGCCGAAGCCGAA
GAAGGCATCAGGGCCATCGTCCTGACAGGTACTGCGCCGGCATTTTGTGC
AGGTGCCGATACGGCCGAGTTCAAGCACCTGACCGGTGACAACAAGGACC
TTGTCGAGAAGCGTGCGGAACTGACGACGCGCCTTCATTCGATTTTTCCC
CAGATGACGAAGCCAGTGGTGACGGCGATCAACGGCGCTGCGATGGGCGG
CGGTGCGGGC
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