mRNA_P-wetherbeei_contig57735.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57735.1.1
Unique NamemRNA_P-wetherbeei_contig57735.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig57735.1.1 vs. uniprot
Match: A0A835YUS3_9STRA (Heme peroxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUS3_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.600e-26
Identity = 47/72 (65.28%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:    1 TGTYDKSTPMSAWPKCGGATGSIRFSPEIDHGCNAGLVNALAILKPVKEKYPTVSWADIMQMASTAAIEQAG 216
            +GTYDKS  +  WPKCGGA GSIRF PEI+H  N+GLV+ L +LKP+K+K+P++SWAD++QMAS  AIEQAG
Sbjct:   38 SGTYDKSIRIEEWPKCGGANGSIRFVPEINHKANSGLVHGLELLKPLKDKHPSISWADLIQMASATAIEQAG 109
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BLAST of mRNA_P-wetherbeei_contig57735.1.1 vs. uniprot
Match: A0A7S1P6M8_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1P6M8_9ALVE)

HSP 1 Score: 107 bits (268), Expect = 9.670e-26
Identity = 48/72 (66.67%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:    1 TGTYDKSTPMSAWPKCGGATGSIRFSPEIDHGCNAGLVNALAILKPVKEKYPTVSWADIMQMASTAAIEQAG 216
            +GTYD   PM+ WP CGGA GSIRF PEI+HG NAGL NAL +LKP+K  +P +SWAD+MQMAS  AIE AG
Sbjct:  288 SGTYDAKMPMTDWPNCGGANGSIRFEPEINHGANAGLQNALNLLKPIKASFPEISWADLMQMASATAIEVAG 359
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BLAST of mRNA_P-wetherbeei_contig57735.1.1 vs. uniprot
Match: A0A7S2UZG1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZG1_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.120e-25
Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:    1 TGTYDKSTPMSAWPKCGGATGSIRFSPEIDHGCNAGLVNALAILKPVKEKYPTVSWADIMQMASTAAIEQAG 216
            +GTYDK   +  WPKCGGA GSIRFSPEI+HG NAGL  AL +LKP+KE++  +SWADI+QMAS  A+  AG
Sbjct:   52 SGTYDKDVGIENWPKCGGANGSIRFSPEIEHGANAGLQGALDLLKPIKEQFSEISWADIIQMASAEAVHLAG 123
[Close]
BLAST of mRNA_P-wetherbeei_contig57735.1.1 vs. uniprot
Match: A0A0G4FGS3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FGS3_VITBC)

HSP 1 Score: 107 bits (268), Expect = 1.350e-25
Identity = 48/72 (66.67%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:    1 TGTYDKSTPMSAWPKCGGATGSIRFSPEIDHGCNAGLVNALAILKPVKEKYPTVSWADIMQMASTAAIEQAG 216
            +GTYD   PM+ WP CGGA GSIRF PEI+HG NAGL NAL +LKP+K  +P +SWAD+MQMAS  AIE AG
Sbjct:  355 SGTYDAKMPMTDWPNCGGANGSIRFEPEINHGANAGLQNALNLLKPIKASFPEISWADLMQMASATAIEVAG 426
[Close]
BLAST of mRNA_P-wetherbeei_contig57735.1.1 vs. uniprot
Match: A0A835ZE60_9STRA (Heme peroxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE60_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.620e-25
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:    1 TGTYDKSTPMSAWPKCGGATGSIRFSPEIDHGCNAGLVNALAILKPVKEKYPTVSWADIMQMASTAAIEQAG 216
            +GTY+K  P+S WP+CGGA GSIRF PEI+HG NAGLVN L +L+P+ +K+P V WAD++Q+AS  A+E AG
Sbjct:   79 SGTYNKDIPVSEWPRCGGANGSIRFEPEINHGANAGLVNGLKLLEPIHKKHPNVGWADLLQLASATAVEVAG 150
[Close]
BLAST of mRNA_P-wetherbeei_contig57735.1.1 vs. uniprot
Match: D7G488_ECTSI (Ascorbate peroxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G488_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.520e-24
Identity = 45/70 (64.29%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:    7 TYDKSTPMSAWPKCGGATGSIRFSPEIDHGCNAGLVNALAILKPVKEKYPTVSWADIMQMASTAAIEQAG 216
            T++K +    WP+CGGA GSIRF PEI+HG NAGLVNAL +L+P+K+K+P V WAD++Q+AS AAIEQAG
Sbjct:    5 TFNKDS-AEPWPRCGGANGSIRFEPEINHGANAGLVNALQLLQPIKDKHPEVGWADLIQLASAAAIEQAG 73
[Close]
BLAST of mRNA_P-wetherbeei_contig57735.1.1 vs. uniprot
Match: D8SS55_SELML (L-ascorbate peroxidase n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SS55_SELML)

HSP 1 Score: 98.2 bits (243), Expect = 8.260e-23
Identity = 46/71 (64.79%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:    4 GTYDKSTPMSAWPKCGGATGSIRFSPEIDHGCNAGLVNALAILKPVKEKYPTVSWADIMQMASTAAIEQAG 216
            GTYDK+  +S WPKCGGA GS+RFS E++HG NAGL+NAL +L PVKEK+  VS+AD+ Q+AS  AIE AG
Sbjct:  107 GTYDKN--ISEWPKCGGANGSLRFSIELEHGANAGLINALKLLNPVKEKFTAVSYADLFQLASATAIEMAG 175
[Close]
BLAST of mRNA_P-wetherbeei_contig57735.1.1 vs. uniprot
Match: A0A7S2V2W5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2W5_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 5.110e-22
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    1 TGTYDKSTPMSAWPKCGGATGSIRFSPEIDHGCNAGLVNALAILKPVKEKYPTVSWADIMQMASTAAIEQAG 216
            +GT+DK      WP  GGA GSIRFSPEI+HG NAGL  A+ +L P+K K+P VSWAD+MQMAS A +E AG
Sbjct:   78 SGTFDKGV-TGEWPAAGGAVGSIRFSPEIEHGANAGLTTAIKLLTPIKNKFPNVSWADLMQMASAAGVELAG 148
[Close]
BLAST of mRNA_P-wetherbeei_contig57735.1.1 vs. uniprot
Match: Q2V8E8_9CHLO (Ascorbate peroxidase n=1 Tax=Ulva fasciata TaxID=111617 RepID=Q2V8E8_9CHLO)

HSP 1 Score: 94.7 bits (234), Expect = 6.220e-22
Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:    4 GTYDKSTPMSAWPKCGGATGSIRFSPEIDHGCNAGLVNALAILKPVKEKYPTVSWADIMQMASTAAIEQAG 216
            GTYD S   +AWPKCGGA GSIRF PEI HG NAGL NAL +L+P+K ++P V +AD+ Q+AS  A+E  G
Sbjct:   36 GTYDDSIGAAAWPKCGGANGSIRFDPEILHGANAGLKNALILLEPIKAQFPEVGYADLFQLASATAVEVMG 106
[Close]
BLAST of mRNA_P-wetherbeei_contig57735.1.1 vs. uniprot
Match: A0A6S9IPW2_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9IPW2_HETAK)

HSP 1 Score: 95.1 bits (235), Expect = 8.510e-22
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:    1 TGTYDKSTPMSAWPKCGGATGSIRFSPEIDHGCNAGLVNALAILKPVKEKYPTVSWADIMQMASTAAIEQAG 216
            +GTY+    +  WP CGGA GSIRF+PEI+HG NAGL   L IL+P+KEK+P+VSWAD+MQMAS  A+E  G
Sbjct:   71 SGTYNGY--VDEWPLCGGANGSIRFAPEINHGANAGLQKGLDILRPIKEKHPSVSWADLMQMASAVAVEHCG 140
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57735.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YUS3_9STRA2.600e-2665.28Heme peroxidase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A7S1P6M8_9ALVE9.670e-2666.67Hypothetical protein (Fragment) n=1 Tax=Vitrella b... [more]
A0A7S2UZG1_9STRA1.120e-2563.89Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A0G4FGS3_VITBC1.350e-2566.67Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A835ZE60_9STRA1.620e-2561.11Heme peroxidase n=1 Tax=Tribonema minus TaxID=3033... [more]
D7G488_ECTSI2.520e-2464.29Ascorbate peroxidase n=2 Tax=Ectocarpus TaxID=2879... [more]
D8SS55_SELML8.260e-2364.79L-ascorbate peroxidase n=2 Tax=Selaginella moellen... [more]
A0A7S2V2W5_9STRA5.110e-2261.11Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
Q2V8E8_9CHLO6.220e-2260.56Ascorbate peroxidase n=1 Tax=Ulva fasciata TaxID=1... [more]
A0A6S9IPW2_HETAK8.510e-2261.11Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57735contigP-wetherbeei_contig57735:226..447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog88036.EFJ12763
Preferred nameAPX7
PFAMsperoxidase
Model size222
Max annot lvl35493|Streptophyta
KEGG rclassRC00092
KEGG koko:K00434
KEGG ReactionR00644
KEGG Pathwayko00053,ko00480,map00053,map00480
Hectar predicted targeting categoryother localisation
GOsGO:0000302,GO:0003674,GO:0003824,GO:0004130,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009056,GO:0009266,GO:0009409,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009631,GO:0009636,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010019,GO:0010033,GO:0016020,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0023052,GO:0031976,GO:0031984,GO:0033554,GO:0034357,GO:0034599,GO:0042221,GO:0042651,GO:0042737,GO:0042743,GO:0042744,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055035,GO:0055114,GO:0065007,GO:0070887,GO:0071588,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1990748
Exons1
Evalue1.89e-21
EggNOG OGsCOG0685@1|root,2QS7Q@2759|Eukaryota,37I6A@33090|Viridiplantae,3G7ZZ@35493|Streptophyta
EC1.11.1.11
DescriptionBelongs to the peroxidase family
Cds size195
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186855.901421-CDS-P-wetherbeei_contig57735:225..4201683186855.901421-CDS-P-wetherbeei_contig57735:225..420Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57735 226..420 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186855.9116488-UTR-P-wetherbeei_contig57735:420..4471683186855.9116488-UTR-P-wetherbeei_contig57735:420..447Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig57735 421..447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57735.1.1prot_P-wetherbeei_contig57735.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57735 226..420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57735.1.1

>prot_P-wetherbeei_contig57735.1.1 ID=prot_P-wetherbeei_contig57735.1.1|Name=mRNA_P-wetherbeei_contig57735.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
MSAWPKCGGATGSIRFSPEIDHGCNAGLVNALAILKPVKEKYPTVSWADI
MQMASTAAIEQAGA*
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mRNA from alignment at P-wetherbeei_contig57735:226..447-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57735.1.1 ID=mRNA_P-wetherbeei_contig57735.1.1|Name=mRNA_P-wetherbeei_contig57735.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig57735:226..447- (Phaeothamnion wetherbeei SAG_119_79)
ACAGGCACGTACGATAAGAGCACCCCGATGTCAGCGTGGCCTAAGTGCGG
CGGCGCCACGGGCTCAATCCGCTTCTCGCCTGAGATTGACCACGGCTGCA
ACGCCGGCCTCGTCAACGCCCTCGCCATCCTGAAGCCGGTCAAGGAGAAG
TATCCAACCGTCTCATGGGCCGACATCATGCAGATGGCCAGCACCGCCGC
CATCGAACAAGCGGGTGCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57735:226..447-

>mRNA_P-wetherbeei_contig57735.1.1 ID=mRNA_P-wetherbeei_contig57735.1.1|Name=mRNA_P-wetherbeei_contig57735.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig57735:226..447- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCAGCGTGGCCTAAGTGCGGCGGCGCCACGGGCTCAATCCGCTTCTC
GCCTGAGATTGACCACGGCTGCAACGCCGGCCTCGTCAACGCCCTCGCCA
TCCTGAAGCCGGTCAAGGAGAAGTATCCAACCGTCTCATGGGCCGACATC
ATGCAGATGGCCAGCACCGCCGCCATCGAACAAGCGGGTGCGTGA
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