mRNA_P-wetherbeei_contig57726.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57726.1.1
Unique NamemRNA_P-wetherbeei_contig57726.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57726.1.1 vs. uniprot
Match: A0A7C4TQ81_9HYPH (DMT family transporter n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TQ81_9HYPH)

HSP 1 Score: 169 bits (428), Expect = 1.700e-49
Identity = 93/140 (66.43%), Postives = 107/140 (76.43%), Query Frame = 1
Query:    1 VALACAVTFAISFLTYREAALAVGPGS-FLWRGAWTVLLAILMQTVVVGAWLAWREPGLLGRLGPHMKLSVFIGATSALGSIFWFTAFALQSASYVRAVGQVEVVFTLLVSGLYYRERISPLELAGIALTVLGVLMFRLV 417
            +ALACA  F++S+L  REA LA+G    FLWRGAWTV+LA  MQTV VG WL   EP     L P   +S FIGATSALGSI WFTAFALQ+ASYVRAVGQVEVVFTLL+S LY+RERI+ +EL GI  TV GV++FRLV
Sbjct:  163 IALACAFAFSLSYLFLREATLAMGEDRHFLWRGAWTVVLATAMQTVFVGWWLWRTEPDAFKALWPDRNMSFFIGATSALGSIAWFTAFALQNASYVRAVGQVEVVFTLLISVLYFRERITGIELVGIGTTVAGVVLFRLV 302          
BLAST of mRNA_P-wetherbeei_contig57726.1.1 vs. uniprot
Match: A0A1G0J7D9_9GAMM (EamA domain-containing protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_56_15 TaxID=1798298 RepID=A0A1G0J7D9_9GAMM)

HSP 1 Score: 151 bits (382), Expect = 3.200e-44
Identity = 82/140 (58.57%), Postives = 105/140 (75.00%), Query Frame = 1
Query:    1 VALACAVTFAISFLTYREAALAVGPGS-FLWRGAWTVLLAILMQTVVVGAWLAWREPGLLGRLGPHMKLSVFIGATSALGSIFWFTAFALQSASYVRAVGQVEVVFTLLVSGLYYRERISPLELAGIALTVLGVLMFRLV 417
            VAL CA+ F++S+L  RE    +G    FLWR  WTV+LA  +QTV +G WLA +EP +  ++ P   ++ FIG TSALGSI W++AFALQ+ASYVRAVGQ+E VFTL +S LY+RE+I+ LEL GIA+TV GVLMFRLV
Sbjct:   29 VALMCALLFSLSYLFLREGTRDLGEQHHFLWRAGWTVVLATGLQTVCLGIWLAVKEPVVFKQMWPLRGIASFIGLTSALGSIGWYSAFALQNASYVRAVGQIEAVFTLAISWLYFREKITALELIGIAVTVAGVLMFRLV 168          
BLAST of mRNA_P-wetherbeei_contig57726.1.1 vs. uniprot
Match: A0A3D5DFW5_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DFW5_9GAMM)

HSP 1 Score: 154 bits (389), Expect = 1.350e-43
Identity = 76/136 (55.88%), Postives = 102/136 (75.00%), Query Frame = 1
Query:    1 VALACAVTFAISFLTYREAALAVGPGSFLWRGAWTVLLAILMQTVVVGAWLAWREPGLLGRLGPHMKLSVFIGATSALGSIFWFTAFALQSASYVRAVGQVEVVFTLLVSGLYYRERISPLELAGIALTVLGVLMF 408
            VA +CA+ F +S+L +REA L + PG FLWRG WTVL+   +QT+V+G W+  REP +  +L P+ ++  FIG TSALGS+ WF+AFALQ+ASYVRAVGQ+E +FT+ +S  Y+RER+S LEL G+   V GVLMF
Sbjct:  168 VAFSCALMFTMSYLFFREATLVLQPGHFLWRGTWTVLIGTGIQTIVLGVWILLREPVVFRQLWPNRRIIGFIGFTSALGSLGWFSAFALQNASYVRAVGQIEAIFTVAISWCYFRERVSGLELLGMGAMVGGVLMF 303          
BLAST of mRNA_P-wetherbeei_contig57726.1.1 vs. uniprot
Match: A0A3M1J842_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1J842_9PROT)

HSP 1 Score: 132 bits (332), Expect = 4.030e-35
Identity = 71/136 (52.21%), Postives = 93/136 (68.38%), Query Frame = 1
Query:    7 LACAVTFAISFLTYREAALAVGPGSFLWRGAWTVLLAILMQTVVVGAWLAWREPGLLGRLGPHMKLSVFIGATSALGSIFWFTAFALQSASYVRAVGQVEVVFTLLVSGLYYRERISPLELAGIALTVLGVLMFRL 414
            L  A++F  S+L  REA+L++G   FL R  +T ++   +Q V +G W+  REPG L  +    KLS FIG TSA+GSI WFTA  L++ASYVRAVGQVE +FTLL+S  Y+RER+ P E  GIA+ V GVL+F L
Sbjct:  168 LGSALSFTFSYLFLREASLSLGADDFLMRAGFTAVVVTALQLVFLGLWIRIREPGGLRAMIRDWKLSSFIGVTSAIGSICWFTAMTLENASYVRAVGQVETIFTLLISHYYFRERLWPAEFLGIAVIVAGVLVFVL 303          
BLAST of mRNA_P-wetherbeei_contig57726.1.1 vs. uniprot
Match: A0A2H6IUR4_9BACT (EamA-like transporter family protein n=1 Tax=bacterium BMS3Bbin10 TaxID=2005733 RepID=A0A2H6IUR4_9BACT)

HSP 1 Score: 126 bits (317), Expect = 6.710e-33
Identity = 71/136 (52.21%), Postives = 95/136 (69.85%), Query Frame = 1
Query:   10 ACAVTFAISFLTYREAALAVGPGSFLWRGAWTVLLAILMQTVVVGAWLAWRE-PGLLGRLGPHMKLSVFIGATSALGSIFWFTAFALQSASYVRAVGQVEVVFTLLVSGLYYRERISPLELAGIALTVLGVLMFRL 414
            A A+ F +S+L  REA+L++G G FL R A TV+     Q V +G WL  RE  GL+  L P  +L  FIG TSA+GSI WFTA  +++ASYV++VGQVE VFTLL+S LY++E+ +  ELAGIA+ + GVL+F L
Sbjct:  168 ASALGFCLSYLFLREASLSLGEGDFLIRAASTVVAVTGFQVVFLGLWLFIREREGLMAML-PDWRLCAFIGVTSAVGSICWFTAMTIENASYVKSVGQVEAVFTLLISSLYFKEKFTVTELAGIAVLIAGVLLFLL 302          
BLAST of mRNA_P-wetherbeei_contig57726.1.1 vs. uniprot
Match: A0A2S8SEH1_9RHOB (Putative membrane protein n=1 Tax=Defluviimonas denitrificans TaxID=404881 RepID=A0A2S8SEH1_9RHOB)

HSP 1 Score: 125 bits (314), Expect = 1.680e-32
Identity = 66/130 (50.77%), Postives = 90/130 (69.23%), Query Frame = 1
Query:   25 FAISFLTYREAALAVGPGSFLWRGAWTVLLAILMQTVVVGAWLAWREPGLLGRLGPHMKLSVFIGATSALGSIFWFTAFALQSASYVRAVGQVEVVFTLLVSGLYYRERISPLELAGIALTVLGVLMFRL 414
            F +S + YR A LA+ P  FL R    +  A + QTV++G WL WREPG LGR+    + ++ +G T  LGS+ WF AF+LQ+A++VRA+GQVE+VFTL+ S L++RER+S  E AGIAL VL VL+  L
Sbjct:  165 FGLSAIGYRGATLALEPLPFLTRAVVALAAATITQTVLMGLWLRWREPGELGRVARGWRRTLPVGVTGVLGSMGWFAAFSLQNAAFVRALGQVEIVFTLMASALFFRERLSGREGAGIALVVLSVLVLIL 294          
BLAST of mRNA_P-wetherbeei_contig57726.1.1 vs. uniprot
Match: A0A6N6SCC2_9RHOB (DMT family transporter n=1 Tax=Defluviimonas sp. TaxID=1917965 RepID=A0A6N6SCC2_9RHOB)

HSP 1 Score: 122 bits (306), Expect = 2.590e-31
Identity = 62/125 (49.60%), Postives = 85/125 (68.00%), Query Frame = 1
Query:   25 FAISFLTYREAALAVGPGSFLWRGAWTVLLAILMQTVVVGAWLAWREPGLLGRLGPHMKLSVFIGATSALGSIFWFTAFALQSASYVRAVGQVEVVFTLLVSGLYYRERISPLELAGIALTVLGV 399
            F +S + YR A LA+ P  F  R    +  A ++QTV++ AWL WREPG +GR+    + +  +G T +LGS+ WF AFALQ+A+YVRA+GQVE+VFTL+ S L +RER+   E AGIAL +L V
Sbjct:  165 FGLSAIGYRGATLALQPLPFFLRALLALAAATVIQTVLMAAWLRWREPGEIGRVLARWRRTALVGVTGSLGSLGWFAAFALQNAAYVRALGQVEIVFTLMASALVFRERLHLREAAGIALVILSV 289          
BLAST of mRNA_P-wetherbeei_contig57726.1.1 vs. uniprot
Match: A0A159Z4C8_9RHOB (EamA domain-containing protein n=1 Tax=Frigidibacter mobilis TaxID=1335048 RepID=A0A159Z4C8_9RHOB)

HSP 1 Score: 122 bits (305), Expect = 3.720e-31
Identity = 60/122 (49.18%), Postives = 83/122 (68.03%), Query Frame = 1
Query:   25 FAISFLTYREAALAVGPGSFLWRGAWTVLLAILMQTVVVGAWLAWREPGLLGRLGPHMKLSVFIGATSALGSIFWFTAFALQSASYVRAVGQVEVVFTLLVSGLYYRERISPLELAGIALTV 390
            F +S + YR A L + P +F  R   T+      Q++ + AWLAWREPG LGR+    + ++++G T  LGS+ WFTAF+LQ+A+YVRAVGQVE+VFTLL S L +RER++  E AGI L +
Sbjct:  166 FGLSAIGYRGATLELAPAAFFTRAVVTLACVTFAQSLGMAAWLAWREPGELGRVAAAWRRTIWVGVTGMLGSLAWFTAFSLQNAAYVRAVGQVEIVFTLLASALVFRERLTAREGAGITLVI 287          
BLAST of mRNA_P-wetherbeei_contig57726.1.1 vs. uniprot
Match: A0A6N6JDS4_9RHOB (Membrane protein n=1 Tax=Litoreibacter roseus TaxID=2601869 RepID=A0A6N6JDS4_9RHOB)

HSP 1 Score: 121 bits (303), Expect = 7.070e-31
Identity = 63/133 (47.37%), Postives = 89/133 (66.92%), Query Frame = 1
Query:    7 LACAVTFAISFLTYREAALAVGPGSFLWRGAWTVLLAILMQTVVVGAWLAWREPGLLGRLGPHMKLSVFIGATSALGSIFWFTAFALQSASYVRAVGQVEVVFTLLVSGLYYRERISPLELAGIALTVLGVLM 405
            LA    F +S + YR AALAV   +   R   T+ +    QT+V+ AWL WREPG + ++    ++S F+G TS LGS  WFTAFALQ+A+YV+A+GQVE++FT L S   ++ER +P E+AGIAL V+ +L+
Sbjct:  159 LAAGFLFGVSAIGYRGAALAVMSDNVFLRAGLTLAIVTAFQTIVMLAWLVWREPGQISKVVTSWRVSGFVGVTSMLGSFGWFTAFALQNAAYVKALGQVELIFTFLGSYFIFKERSTPREIAGIALIVVSILV 291          
BLAST of mRNA_P-wetherbeei_contig57726.1.1 vs. uniprot
Match: A0A5J4E2F0_9BACT (EamA domain-containing protein n=1 Tax=bacterium MnTg02 TaxID=2080452 RepID=A0A5J4E2F0_9BACT)

HSP 1 Score: 118 bits (295), Expect = 1.810e-30
Identity = 58/135 (42.96%), Postives = 93/135 (68.89%), Query Frame = 1
Query:    1 VALACAVTFAISFLTYREAALAVGPGSFLWRGAWTVLLAILMQTVVVGAWLAWREPGLLGRLGPHMKLSVFIGATSALGSIFWFTAFALQSASYVRAVGQVEVVFTLLVSGLYYRERISPLELAGIALTVLGVLM 405
            + LAC      S + +R AAL++G   FL + A  + +A+++Q+V +G +LA REPG +  +  H + S+ +G   AL SI WF+AF LQ+A+YVRA+GQ+E+VFT+LVS +++RE+I  +EL G+  +V G+L+
Sbjct:   78 IGLACGAALGASVVFFRGAALSLGGEGFLMQAAMALAVAVVIQSVAMGIYLAIREPGQIKAVLVHWRPSLAVGVAGALASILWFSAFTLQNAAYVRALGQIELVFTMLVSAIFFREKIKSMELVGVVFSVGGILI 212          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57726.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4TQ81_9HYPH1.700e-4966.43DMT family transporter n=1 Tax=Hyphomicrobiales ba... [more]
A0A1G0J7D9_9GAMM3.200e-4458.57EamA domain-containing protein n=1 Tax=Gammaproteo... [more]
A0A3D5DFW5_9GAMM1.350e-4355.88Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A3M1J842_9PROT4.030e-3552.21Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A2H6IUR4_9BACT6.710e-3352.21EamA-like transporter family protein n=1 Tax=bacte... [more]
A0A2S8SEH1_9RHOB1.680e-3250.77Putative membrane protein n=1 Tax=Defluviimonas de... [more]
A0A6N6SCC2_9RHOB2.590e-3149.60DMT family transporter n=1 Tax=Defluviimonas sp. T... [more]
A0A159Z4C8_9RHOB3.720e-3149.18EamA domain-containing protein n=1 Tax=Frigidibact... [more]
A0A6N6JDS4_9RHOB7.070e-3147.37Membrane protein n=1 Tax=Litoreibacter roseus TaxI... [more]
A0A5J4E2F0_9BACT1.810e-3042.96EamA domain-containing protein n=1 Tax=bacterium M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57726contigP-wetherbeei_contig57726:7..429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog314256.OG2516_15369
Preferred nameMA20_39710
PFAMsEamA
Model size423
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue9.95e-31
EggNOG OGsCOG0697@1|root,COG0697@2|Bacteria,1PHRI@1224|Proteobacteria,2TUAQ@28211|Alphaproteobacteria,2PDVJ@252301|Oceanicola
DescriptionEamA-like transporter family
Cds size423
COG categoryEG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186855.7235081-CDS-P-wetherbeei_contig57726:6..4291683186855.7235081-CDS-P-wetherbeei_contig57726:6..429Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57726 7..429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57726.1.1prot_P-wetherbeei_contig57726.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57726 7..429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57726.1.1

>prot_P-wetherbeei_contig57726.1.1 ID=prot_P-wetherbeei_contig57726.1.1|Name=mRNA_P-wetherbeei_contig57726.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=141bp
VALACAVTFAISFLTYREAALAVGPGSFLWRGAWTVLLAILMQTVVVGAW
LAWREPGLLGRLGPHMKLSVFIGATSALGSIFWFTAFALQSASYVRAVGQ
VEVVFTLLVSGLYYRERISPLELAGIALTVLGVLMFRLVV*
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mRNA from alignment at P-wetherbeei_contig57726:7..429+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57726.1.1 ID=mRNA_P-wetherbeei_contig57726.1.1|Name=mRNA_P-wetherbeei_contig57726.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig57726:7..429+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGCGCTCGCGTGTGCCGTGACGTTCGCGATCTCCTTCCTCACCTACCG CGAGGCGGCCCTCGCTGTCGGGCCGGGCAGTTTCCTGTGGCGCGGCGCTT GGACCGTGCTGCTTGCCATTCTGATGCAGACGGTCGTCGTCGGCGCTTGG CTGGCCTGGCGCGAGCCGGGCCTCCTCGGCCGGCTCGGCCCGCACATGAA GCTCTCGGTGTTCATCGGCGCGACGAGCGCCCTCGGCTCGATTTTCTGGT TCACCGCATTTGCGTTGCAGAGTGCGTCCTACGTTCGCGCTGTCGGCCAA GTCGAGGTCGTCTTCACGCTCCTCGTGTCGGGCCTATATTATCGCGAGCG CATTTCGCCTCTCGAACTGGCCGGCATCGCGTTGACGGTGCTCGGCGTCC TGATGTTCCGCCTTGTCGTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57726:7..429+

>mRNA_P-wetherbeei_contig57726.1.1 ID=mRNA_P-wetherbeei_contig57726.1.1|Name=mRNA_P-wetherbeei_contig57726.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig57726:7..429+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGCGCTCGCGTGTGCCGTGACGTTCGCGATCTCCTTCCTCACCTACCG
CGAGGCGGCCCTCGCTGTCGGGCCGGGCAGTTTCCTGTGGCGCGGCGCTT
GGACCGTGCTGCTTGCCATTCTGATGCAGACGGTCGTCGTCGGCGCTTGG
CTGGCCTGGCGCGAGCCGGGCCTCCTCGGCCGGCTCGGCCCGCACATGAA
GCTCTCGGTGTTCATCGGCGCGACGAGCGCCCTCGGCTCGATTTTCTGGT
TCACCGCATTTGCGTTGCAGAGTGCGTCCTACGTTCGCGCTGTCGGCCAA
GTCGAGGTCGTCTTCACGCTCCTCGTGTCGGGCCTATATTATCGCGAGCG
CATTTCGCCTCTCGAACTGGCCGGCATCGCGTTGACGGTGCTCGGCGTCC
TGATGTTCCGCCTTGTCGTCTGA
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