mRNA_P-wetherbeei_contig57640.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57640.1.1
Unique NamemRNA_P-wetherbeei_contig57640.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57640.1.1 vs. uniprot
Match: A0A1B3LJT7_9PROT (Addiction module antidote protein, HigA family n=1 Tax=Methyloversatilis sp. RAC08 TaxID=1842540 RepID=A0A1B3LJT7_9PROT)

HSP 1 Score: 159 bits (403), Expect = 4.090e-48
Identity = 74/100 (74.00%), Postives = 87/100 (87.00%), Query Frame = 1
Query:   64 PRRPLGWGVRLSPVGVPARAPWHPGRFLNRHYLGPLQMSQSQAARLLGLSRRRLHEVVHGQRAMTPDTALRCAIVFHTDAMFWLALQSAWDSFHAWKSLR 363
            P RP    +R +P G+P RAPWHPGRFL+R+YL PL +SQS+AAR LG+SRRRLHE+VHGQRAMTPDTA+RCA++F TDA FWLALQSAWDSFHAWK+LR
Sbjct:   16 PLRPGRSPLRRAPAGIPVRAPWHPGRFLSRNYLEPLGLSQSEAARALGMSRRRLHEIVHGQRAMTPDTAIRCALLFGTDAAFWLALQSAWDSFHAWKALR 115          
BLAST of mRNA_P-wetherbeei_contig57640.1.1 vs. uniprot
Match: UPI0003653AE8 (HigA family addiction module antitoxin n=2 Tax=Methyloversatilis discipulorum TaxID=1119528 RepID=UPI0003653AE8)

HSP 1 Score: 156 bits (394), Expect = 1.480e-46
Identity = 70/88 (79.55%), Postives = 81/88 (92.05%), Query Frame = 1
Query:  100 PVGVPARAPWHPGRFLNRHYLGPLQMSQSQAARLLGLSRRRLHEVVHGQRAMTPDTALRCAIVFHTDAMFWLALQSAWDSFHAWKSLR 363
            P G+P RAPWHPGRFL+R++L PL MSQS+AAR LG+SRRRLHE+VHGQRAMTPDTA+RCA++F TDA FWLALQSAWDSFHAWK+LR
Sbjct:   42 PAGIPVRAPWHPGRFLSRNFLEPLGMSQSEAARALGMSRRRLHEIVHGQRAMTPDTAIRCALLFGTDAAFWLALQSAWDSFHAWKALR 129          
BLAST of mRNA_P-wetherbeei_contig57640.1.1 vs. uniprot
Match: A0A4P6GRN3_9BURK (Addiction module antidote protein, HigA family n=7 Tax=Methylibium TaxID=316612 RepID=A0A4P6GRN3_9BURK)

HSP 1 Score: 153 bits (386), Expect = 7.070e-46
Identity = 71/100 (71.00%), Postives = 83/100 (83.00%), Query Frame = 1
Query:   94 LSPVGVPARAPWHPGRFLNRHYLGPLQMSQSQAARLLGLSRRRLHEVVHGQRAMTPDTALRCAIVFHTDAMFWLALQSAWDSFHAWKSLRLRAQCVRVTH 393
            L P GVP RAPWHPGRFL  +YL PL +SQ++AARLLG+SRRRLHE+VHGQR +T DTA+RCA+VF TDA FWLALQSAWDSFH WK LR++ +  R TH
Sbjct:    2 LLPPGVPGRAPWHPGRFLRCNYLTPLGLSQTEAARLLGVSRRRLHEIVHGQRGITADTAIRCALVFGTDAAFWLALQSAWDSFHTWKLLRVQTRRTRGTH 101          
BLAST of mRNA_P-wetherbeei_contig57640.1.1 vs. uniprot
Match: A0A2W6XWK5_9RHOO (Addiction module antidote protein, HigA family n=1 Tax=Thauera sp. TaxID=1905334 RepID=A0A2W6XWK5_9RHOO)

HSP 1 Score: 147 bits (372), Expect = 7.980e-44
Identity = 67/82 (81.71%), Postives = 77/82 (93.90%), Query Frame = 1
Query:  118 RAPWHPGRFLNRHYLGPLQMSQSQAARLLGLSRRRLHEVVHGQRAMTPDTALRCAIVFHTDAMFWLALQSAWDSFHAWKSLR 363
            RAPWHPGRFL+R++L PL MSQS+AAR LG+SRRRLHE+VHGQRAMTPDTA+RCA++F TDA FWLALQSAWDSFHAWK+LR
Sbjct:    2 RAPWHPGRFLSRNFLEPLGMSQSEAARALGMSRRRLHEIVHGQRAMTPDTAIRCALLFGTDAAFWLALQSAWDSFHAWKALR 83          
BLAST of mRNA_P-wetherbeei_contig57640.1.1 vs. uniprot
Match: UPI001F1A115D (HigA family addiction module antitoxin n=1 Tax=Pelomonas sp. P7 TaxID=2906763 RepID=UPI001F1A115D)

HSP 1 Score: 149 bits (376), Expect = 8.600e-44
Identity = 74/111 (66.67%), Postives = 85/111 (76.58%), Query Frame = 1
Query:   43 SGPGNPDPRRPLGWGVRLSPVGVPARAPWHPGRFLNRHYLGPLQMSQSQAARLLGLSRRRLHEVVHGQRAMTPDTALRCAIVFHTDAMFWLALQSAWDSFHAWKSLRLRAQ 375
            SGP       P   G+R  P GVP R P HPGRFL RHYL PL +SQS AAR LG+SRRRLHE+VHGQRA++PDTALRCA+VF +DA F LALQSAWDSFHAWK +R R++
Sbjct:   28 SGPALGPQAEPTRRGLRHPPAGVPVRLPTHPGRFLQRHYLAPLALSQSDAARRLGMSRRRLHEIVHGQRAVSPDTALRCALVFGSDAAFLLALQSAWDSFHAWKQMRSRSR 138          
BLAST of mRNA_P-wetherbeei_contig57640.1.1 vs. uniprot
Match: A0A7Y0CRD3_9BURK (HigA family addiction module antidote protein n=1 Tax=Rhodoferax sp. TaxID=50421 RepID=A0A7Y0CRD3_9BURK)

HSP 1 Score: 145 bits (367), Expect = 7.970e-43
Identity = 66/91 (72.53%), Postives = 79/91 (86.81%), Query Frame = 1
Query:   97 SPVGVPARAPWHPGRFLNRHYLGPLQMSQSQAARLLGLSRRRLHEVVHGQRAMTPDTALRCAIVFHTDAMFWLALQSAWDSFHAWKSLRLR 369
            +P GVP RAPWHPG FLNR+YL P+ +SQ+ AARLLG+SRRRLHE+V GQR+MTPDTA+RCA+VF +DA FWLALQ+AWD+F AWK LR R
Sbjct:   15 TPPGVPPRAPWHPGHFLNRNYLAPMGLSQTNAARLLGVSRRRLHELVRGQRSMTPDTAIRCALVFRSDATFWLALQAAWDNFQAWKLLRSR 105          
BLAST of mRNA_P-wetherbeei_contig57640.1.1 vs. uniprot
Match: UPI0003A0AB02 (HigA family addiction module antitoxin n=1 Tax=Methyloversatilis thermotolerans TaxID=1346290 RepID=UPI0003A0AB02)

HSP 1 Score: 144 bits (363), Expect = 3.240e-42
Identity = 66/99 (66.67%), Postives = 80/99 (80.81%), Query Frame = 1
Query:  100 PVGVPARAPWHPGRFLNRHYLGPLQMSQSQAARLLGLSRRRLHEVVHGQRAMTPDTALRCAIVFHTDAMFWLALQSAWDSFHAWKSLRLR-AQCVRVTH 393
            P G+P RAPWHPGRFL R++L PL ++QS+AAR LG+SRRRLHE+VHGQRA+TPDTA+RCA++F TD    LA+QSAWDSFHAWK+LR   A   R  H
Sbjct:   15 PAGIPVRAPWHPGRFLQRNFLSPLGLTQSEAARALGMSRRRLHEIVHGQRALTPDTAIRCALLFGTDTALLLAMQSAWDSFHAWKTLRAEPAALPRAAH 113          
BLAST of mRNA_P-wetherbeei_contig57640.1.1 vs. uniprot
Match: A0A254MZF1_9BURK (Addiction module antidote protein, HigA family n=2 Tax=Burkholderiales TaxID=80840 RepID=A0A254MZF1_9BURK)

HSP 1 Score: 144 bits (362), Expect = 4.320e-42
Identity = 67/98 (68.37%), Postives = 81/98 (82.65%), Query Frame = 1
Query:   88 VRLSPVGVPARAPWHPGRFLNRHYLGPLQMSQSQAARLLGLSRRRLHEVVHGQRAMTPDTALRCAIVFHTDAMFWLALQSAWDSFHAWKSLRLRAQCV 381
            +R  P GVP R P HPGRFL RHYL PL M+QS AAR LG+SRRRLHE+VHGQRA++PDTALRCA+VF +DA F LA+QSAWDSFHAWK +R +++ +
Sbjct:   11 LRHPPAGVPVRLPPHPGRFLQRHYLAPLAMNQSDAARRLGMSRRRLHELVHGQRAVSPDTALRCALVFGSDAAFLLAMQSAWDSFHAWKQMRAQSRLL 108          
BLAST of mRNA_P-wetherbeei_contig57640.1.1 vs. uniprot
Match: A0A3E1R6C3_9BURK (Addiction module antidote protein, HigA family n=1 Tax=Rhodoferax lacus TaxID=2184758 RepID=A0A3E1R6C3_9BURK)

HSP 1 Score: 143 bits (361), Expect = 5.770e-42
Identity = 66/88 (75.00%), Postives = 76/88 (86.36%), Query Frame = 1
Query:  100 PVGVPARAPWHPGRFLNRHYLGPLQMSQSQAARLLGLSRRRLHEVVHGQRAMTPDTALRCAIVFHTDAMFWLALQSAWDSFHAWKSLR 363
            P GV  RAPWHPGRFL  +YL PL +SQS+AAR LG+SRRRLHE+V GQR MTPDTA+RCA+VFH+DA FWLALQ+AWDSF+AWK LR
Sbjct:   15 PPGVSPRAPWHPGRFLRHNYLAPLGLSQSEAARRLGVSRRRLHELVQGQRDMTPDTAIRCALVFHSDANFWLALQAAWDSFYAWKQLR 102          
BLAST of mRNA_P-wetherbeei_contig57640.1.1 vs. uniprot
Match: A0A370FEL4_9BURK (Addiction module HigA family antidote n=4 Tax=Pseudacidovorax TaxID=433923 RepID=A0A370FEL4_9BURK)

HSP 1 Score: 139 bits (349), Expect = 4.110e-40
Identity = 67/98 (68.37%), Postives = 78/98 (79.59%), Query Frame = 1
Query:  100 PVGVPARAPWHPGRFLNRHYLGPLQMSQSQAARLLGLSRRRLHEVVHGQRAMTPDTALRCAIVFHTDAMFWLALQSAWDSFHAWKSLRLRAQCVRVTH 393
            P GVP R P HPGRFL RHYL PL ++QS AAR LG+SRRRLHE+VHGQRA++PDTALRCA+VF +D  F LA+QSAWDSFH WK  ++RAQ    TH
Sbjct:   15 PAGVPVRLPTHPGRFLQRHYLAPLAINQSDAARRLGMSRRRLHEIVHGQRAVSPDTALRCALVFGSDTAFLLAMQSAWDSFHLWK--QMRAQSRPGTH 110          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57640.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1B3LJT7_9PROT4.090e-4874.00Addiction module antidote protein, HigA family n=1... [more]
UPI0003653AE81.480e-4679.55HigA family addiction module antitoxin n=2 Tax=Met... [more]
A0A4P6GRN3_9BURK7.070e-4671.00Addiction module antidote protein, HigA family n=7... [more]
A0A2W6XWK5_9RHOO7.980e-4481.71Addiction module antidote protein, HigA family n=1... [more]
UPI001F1A115D8.600e-4466.67HigA family addiction module antitoxin n=1 Tax=Pel... [more]
A0A7Y0CRD3_9BURK7.970e-4372.53HigA family addiction module antidote protein n=1 ... [more]
UPI0003A0AB023.240e-4266.67HigA family addiction module antitoxin n=1 Tax=Met... [more]
A0A254MZF1_9BURK4.320e-4268.37Addiction module antidote protein, HigA family n=2... [more]
A0A3E1R6C3_9BURK5.770e-4275.00Addiction module antidote protein, HigA family n=1... [more]
A0A370FEL4_9BURK4.110e-4068.37Addiction module HigA family antidote n=4 Tax=Pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57640contigP-wetherbeei_contig57640:113..508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog420662.Mpe_A2823
PFAMsHTH_3
Model size398
Max annot lvl28216|Betaproteobacteria
KEGG koko:K21498
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.44e-47
EggNOG OGsCOG3093@1|root,COG3093@2|Bacteria,1N76J@1224|Proteobacteria,2VU0Y@28216|Betaproteobacteria,1KMEV@119065|unclassified Burkholderiales
DescriptionHelix-turn-helix XRE-family like proteins
Cds size396
COG categoryK
BRITEko00000,ko02048
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186854.7657082-CDS-P-wetherbeei_contig57640:112..5081683186854.7657082-CDS-P-wetherbeei_contig57640:112..508Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57640 113..508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57640.1.1prot_P-wetherbeei_contig57640.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57640 113..508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57640.1.1

>prot_P-wetherbeei_contig57640.1.1 ID=prot_P-wetherbeei_contig57640.1.1|Name=mRNA_P-wetherbeei_contig57640.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
PRSAFGAPPQGGAASGPGNPDPRRPLGWGVRLSPVGVPARAPWHPGRFLN
RHYLGPLQMSQSQAARLLGLSRRRLHEVVHGQRAMTPDTALRCAIVFHTD
AMFWLALQSAWDSFHAWKSLRLRAQCVRVTH*
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mRNA from alignment at P-wetherbeei_contig57640:113..508-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57640.1.1 ID=mRNA_P-wetherbeei_contig57640.1.1|Name=mRNA_P-wetherbeei_contig57640.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig57640:113..508- (Phaeothamnion wetherbeei SAG_119_79)
CCCCGTAGCGCCTTCGGCGCTCCCCCCCAGGGGGGCGCCGCCAGCGGACC GGGAAACCCGGATCCGCGGCGACCGCTTGGTTGGGGCGTCCGCCTCTCAC CCGTGGGCGTGCCGGCGCGCGCGCCGTGGCACCCGGGGCGCTTCCTGAAC CGGCACTACCTCGGGCCATTGCAGATGTCGCAGTCGCAGGCGGCGCGCCT GCTCGGCCTGTCGCGCCGGCGCCTGCACGAAGTGGTGCACGGCCAGCGCG CGATGACGCCCGACACGGCGCTGCGCTGTGCGATCGTGTTCCACACCGAC GCGATGTTTTGGCTCGCGCTGCAATCGGCCTGGGACAGCTTCCACGCGTG GAAGAGCCTGCGCCTGCGCGCGCAGTGCGTTCGTGTCACGCACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57640:113..508-

>mRNA_P-wetherbeei_contig57640.1.1 ID=mRNA_P-wetherbeei_contig57640.1.1|Name=mRNA_P-wetherbeei_contig57640.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig57640:113..508- (Phaeothamnion wetherbeei SAG_119_79)
CCCCGTAGCGCCTTCGGCGCTCCCCCCCAGGGGGGCGCCGCCAGCGGACC
GGGAAACCCGGATCCGCGGCGACCGCTTGGTTGGGGCGTCCGCCTCTCAC
CCGTGGGCGTGCCGGCGCGCGCGCCGTGGCACCCGGGGCGCTTCCTGAAC
CGGCACTACCTCGGGCCATTGCAGATGTCGCAGTCGCAGGCGGCGCGCCT
GCTCGGCCTGTCGCGCCGGCGCCTGCACGAAGTGGTGCACGGCCAGCGCG
CGATGACGCCCGACACGGCGCTGCGCTGTGCGATCGTGTTCCACACCGAC
GCGATGTTTTGGCTCGCGCTGCAATCGGCCTGGGACAGCTTCCACGCGTG
GAAGAGCCTGCGCCTGCGCGCGCAGTGCGTTCGTGTCACGCACTGA
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