mRNA_P-wetherbeei_contig57617.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57617.1.1
Unique NamemRNA_P-wetherbeei_contig57617.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57617.1.1 vs. uniprot
Match: UPI001993D618 (Uncharacterized protein n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI001993D618)

HSP 1 Score: 100 bits (248), Expect = 6.390e-25
Identity = 49/69 (71.01%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    1 MPIVSQRSGSDERAALFPPELLAYFDDSFIASFDLFEEYSARLTLDLFRTLGLEAACRSEASVAQAVAR 207
            MPIVS+RSG D+R AL+PPELLA+FDDSFI SFD FEEY ARLTL +F++ GLEA CRSE +V QA+ R
Sbjct:    1 MPIVSRRSGQDDRVALYPPELLAHFDDSFITSFDFFEEYVARLTLAVFQSTGLEAVCRSETTVVQAITR 69
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57617.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001993D6186.390e-2571.01Uncharacterized protein n=1 Tax=Prolixibacteraceae... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57617contigP-wetherbeei_contig57617:302..508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size207
Hectar predicted targeting categoryother localisation
Exons1
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186854.584787-CDS-P-wetherbeei_contig57617:301..5081683186854.584787-CDS-P-wetherbeei_contig57617:301..508Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57617 302..508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57617.1.1prot_P-wetherbeei_contig57617.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57617 302..508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57617.1.1

>prot_P-wetherbeei_contig57617.1.1 ID=prot_P-wetherbeei_contig57617.1.1|Name=mRNA_P-wetherbeei_contig57617.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=69bp
MPIVSQRSGSDERAALFPPELLAYFDDSFIASFDLFEEYSARLTLDLFRT
LGLEAACRSEASVAQAVAR
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mRNA from alignment at P-wetherbeei_contig57617:302..508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57617.1.1 ID=mRNA_P-wetherbeei_contig57617.1.1|Name=mRNA_P-wetherbeei_contig57617.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig57617:302..508+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCAATCGTTTCCCAACGCAGCGGCAGCGACGAACGGGCGGCCCTGTT
TCCGCCGGAGCTGCTCGCGTATTTCGACGATTCCTTCATTGCCTCGTTCG
ATCTGTTCGAAGAGTACAGCGCACGCCTGACCTTGGATTTGTTCCGAACC
CTTGGCCTGGAAGCGGCGTGCCGGTCCGAGGCAAGCGTTGCCCAAGCGGT
AGCCCGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57617:302..508+

>mRNA_P-wetherbeei_contig57617.1.1 ID=mRNA_P-wetherbeei_contig57617.1.1|Name=mRNA_P-wetherbeei_contig57617.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig57617:302..508+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCAATCGTTTCCCAACGCAGCGGCAGCGACGAACGGGCGGCCCTGTT
TCCGCCGGAGCTGCTCGCGTATTTCGACGATTCCTTCATTGCCTCGTTCG
ATCTGTTCGAAGAGTACAGCGCACGCCTGACCTTGGATTTGTTCCGAACC
CTTGGCCTGGAAGCGGCGTGCCGGTCCGAGGCAAGCGTTGCCCAAGCGGT
AGCCCGT
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