mRNA_P-wetherbeei_contig57616.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57616.1.1
Unique NamemRNA_P-wetherbeei_contig57616.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57616.1.1 vs. uniprot
Match: A0A6J4U5Z6_9CHLR (Uncharacterized protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4U5Z6_9CHLR)

HSP 1 Score: 68.6 bits (166), Expect = 1.930e-13
Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    1 MEVADRIWIGAFIYGITGHVTAYLDRLPGASTVLLWNLSVSDLTLLAPVVLFPLGLIAIGGR 186
            ++V++RIWIG F++G+T  VT  LD +PG+  ++   L+V D+TLLA +VLF LGL+A GGR
Sbjct:   43 LQVSERIWIGQFVFGLTRPVTDVLDLVPGSQRIVYGRLNVVDITLLALLVLFLLGLVATGGR 104
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BLAST of mRNA_P-wetherbeei_contig57616.1.1 vs. uniprot
Match: A0A6J4UCN2_9CHLR (Uncharacterized protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4UCN2_9CHLR)

HSP 1 Score: 65.5 bits (158), Expect = 1.820e-12
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 MEVADRIWIGAFIYGITGHVTAYLDRLPGASTVLLWNLSVSDLTLLAPVVLFPLGLIAIGGRD 189
            ++V+DRIWIG F+Y +TG VT  L  +PG    L   L+  D+TLLA + LF LG+IA GGR+
Sbjct:   21 LDVSDRIWIGQFVYRLTGPVTELLAIIPGGDRTLFAGLTTLDITLLALLPLFVLGIIATGGRN 83
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BLAST of mRNA_P-wetherbeei_contig57616.1.1 vs. uniprot
Match: A0A7W0PP19_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0PP19_9CHLR)

HSP 1 Score: 63.2 bits (152), Expect = 2.540e-11
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 MEVADRIWIGAFIYGITGHVTAYLDRLPGASTVLLWNLSVSDLTLLAPVVLFPLGLIAIG 180
            ++++DRIWIG FIYG+T  VT  L  LPGA   +  NL+  D+TLLA ++LF LG++A G
Sbjct:   43 LDISDRIWIGEFIYGLTRPVTQVLSFLPGADREIYRNLTTVDITLLAFLLLFLLGVLATG 102
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BLAST of mRNA_P-wetherbeei_contig57616.1.1 vs. uniprot
Match: A0A7V9VUS3_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VUS3_9CHLR)

HSP 1 Score: 62.8 bits (151), Expect = 3.430e-11
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 MEVADRIWIGAFIYGITGHVTAYLDRLPGASTVLLWNLSVSDLTLLAPVVLFPLGLIAIG 180
            ++V+DR+WIG F+YG+T  VT  LD LPG+   +  NL+  D+TLLA + LF LG++A G
Sbjct:   43 LDVSDRVWIGEFVYGLTRPVTRVLDFLPGSGRHVYGNLTTVDVTLLAFLCLFLLGVVATG 102
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57616.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6J4U5Z6_9CHLR1.930e-1351.61Uncharacterized protein n=1 Tax=uncultured Thermom... [more]
A0A6J4UCN2_9CHLR1.820e-1250.79Uncharacterized protein n=1 Tax=uncultured Thermom... [more]
A0A7W0PP19_9CHLR2.540e-1151.67Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
A0A7V9VUS3_9CHLR3.430e-1150.00Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57616contigP-wetherbeei_contig57616:8..210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size203
Hectar predicted targeting categoryother localisation
Exons1
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186854.5064123-CDS-P-wetherbeei_contig57616:7..2021683186854.5064123-CDS-P-wetherbeei_contig57616:7..202Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57616 8..202 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186854.5167594-UTR-P-wetherbeei_contig57616:202..2101683186854.5167594-UTR-P-wetherbeei_contig57616:202..210Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig57616 203..210 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57616.1.1prot_P-wetherbeei_contig57616.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57616 8..202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57616.1.1

>prot_P-wetherbeei_contig57616.1.1 ID=prot_P-wetherbeei_contig57616.1.1|Name=mRNA_P-wetherbeei_contig57616.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
MEVADRIWIGAFIYGITGHVTAYLDRLPGASTVLLWNLSVSDLTLLAPVV
LFPLGLIAIGGRDR*
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mRNA from alignment at P-wetherbeei_contig57616:8..210+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57616.1.1 ID=mRNA_P-wetherbeei_contig57616.1.1|Name=mRNA_P-wetherbeei_contig57616.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=203bp|location=Sequence derived from alignment at P-wetherbeei_contig57616:8..210+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGTGGCGGACCGGATCTGGATCGGGGCGTTCATCTACGGCATCAC
CGGTCATGTGACGGCCTATCTCGACCGGCTGCCGGGGGCATCGACCGTGC
TCCTGTGGAACCTGAGTGTGAGCGACCTGACGCTGTTGGCCCCGGTCGTG
CTCTTTCCGCTGGGACTGATCGCGATCGGCGGCCGCGACCGCTGACGATC
CTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57616:8..210+

>mRNA_P-wetherbeei_contig57616.1.1 ID=mRNA_P-wetherbeei_contig57616.1.1|Name=mRNA_P-wetherbeei_contig57616.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig57616:8..210+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGTGGCGGACCGGATCTGGATCGGGGCGTTCATCTACGGCATCAC
CGGTCATGTGACGGCCTATCTCGACCGGCTGCCGGGGGCATCGACCGTGC
TCCTGTGGAACCTGAGTGTGAGCGACCTGACGCTGTTGGCCCCGGTCGTG
CTCTTTCCGCTGGGACTGATCGCGATCGGCGGCCGCGACCGCTGA
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