mRNA_P-wetherbeei_contig57600.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57600.1.1
Unique NamemRNA_P-wetherbeei_contig57600.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57600.1.1 vs. uniprot
Match: A0A3D4ILI2_9BACT (DNA-binding response regulator n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3D4ILI2_9BACT)

HSP 1 Score: 222 bits (565), Expect = 2.040e-71
Identity = 114/132 (86.36%), Postives = 122/132 (92.42%), Query Frame = 1
Query:    4 NTKIILLSMHDEVHLVKEILKAGVNGYVLKKDTHKELLNAIHDVSNGKVYLSSDVNKMLITNLNNPDEGKLLTDREREILKLIAKEYTNKDIAEELFISERTVETHRKNIFKKTATNSLVGLIKFAYANNLI 399
            N KIILLSMHDEVHLVKEILKAG+NGYVLKKDT  ELL AI +V+ GKV+LS+D+NK+LI NL NPDEGKLLTDREREI+KLIAKEYTNK IAEELFISERTVETHRKNIFKKT TNSLVGLIKFAYANNLI
Sbjct:   90 NIKIILLSMHDEVHLVKEILKAGINGYVLKKDTQHELLQAIKEVAAGKVFLSNDINKLLIVNLQNPDEGKLLTDREREIVKLIAKEYTNKQIAEELFISERTVETHRKNIFKKTGTNSLVGLIKFAYANNLI 221          
BLAST of mRNA_P-wetherbeei_contig57600.1.1 vs. uniprot
Match: A0A239F3X0_9BACT (Two component transcriptional regulator, LuxR family n=2 Tax=Ekhidna lutea TaxID=447679 RepID=A0A239F3X0_9BACT)

HSP 1 Score: 211 bits (536), Expect = 4.900e-67
Identity = 106/133 (79.70%), Postives = 120/133 (90.23%), Query Frame = 1
Query:    1 PNTKIILLSMHDEVHLVKEILKAGVNGYVLKKDTHKELLNAIHDVSNGKVYLSSDVNKMLITNLNNPDEGKLLTDREREILKLIAKEYTNKDIAEELFISERTVETHRKNIFKKTATNSLVGLIKFAYANNLI 399
            PNTKII+LSMHDE HL+KEILK GV+GY+LKKD+H+EL+NA+  V NGKVYLSSDVN ML+  LN  +E KLLTDREREILKLIAKE+TNK +AEELFISERTVETHRKNIF+KT TN+LVGLIKFAYANNLI
Sbjct:   87 PNTKIIVLSMHDEAHLIKEILKEGVDGYILKKDSHEELVNAVRAVKNGKVYLSSDVNTMLMKGLNGTEEQKLLTDREREILKLIAKEFTNKQMAEELFISERTVETHRKNIFRKTKTNNLVGLIKFAYANNLI 219          
BLAST of mRNA_P-wetherbeei_contig57600.1.1 vs. uniprot
Match: A0A401UAH1_9BACT (DNA-binding response regulator n=2 Tax=Chryseotalea sanaruensis TaxID=2482724 RepID=A0A401UAH1_9BACT)

HSP 1 Score: 209 bits (533), Expect = 8.930e-67
Identity = 107/133 (80.45%), Postives = 120/133 (90.23%), Query Frame = 1
Query:    1 PNTKIILLSMHDEVHLVKEILKAGVNGYVLKKDTHKELLNAIHDVSNGKVYLSSDVNKMLITNLNNPDEGKLLTDREREILKLIAKEYTNKDIAEELFISERTVETHRKNIFKKTATNSLVGLIKFAYANNLI 399
            P  KII+LSMHDEVHL KEILK GV+GYVLKKDT +ELL AI +V  G+VYLSSD+NK+LI NL+NPDEG+LLT+REREI+KLIAKEY+NK IAE LFISERTVETHRKNIF+KT TNSLVGLIKFAYANNLI
Sbjct:   73 PGVKIIVLSMHDEVHLAKEILKGGVDGYVLKKDTQQELLKAIQEVRAGRVYLSSDINKLLIMNLDNPDEGRLLTEREREIVKLIAKEYSNKLIAEALFISERTVETHRKNIFRKTGTNSLVGLIKFAYANNLI 205          
BLAST of mRNA_P-wetherbeei_contig57600.1.1 vs. uniprot
Match: A0A7Y7EEF0_9BACT (Response regulator transcription factor n=1 Tax=Cytophagia bacterium TaxID=2026730 RepID=A0A7Y7EEF0_9BACT)

HSP 1 Score: 206 bits (524), Expect = 2.870e-66
Identity = 105/133 (78.95%), Postives = 117/133 (87.97%), Query Frame = 1
Query:    1 PNTKIILLSMHDEVHLVKEILKAGVNGYVLKKDTHKELLNAIHDVSNGKVYLSSDVNKMLITNLNNPDEGKLLTDREREILKLIAKEYTNKDIAEELFISERTVETHRKNIFKKTATNSLVGLIKFAYANNLI 399
            P  KII+LSMHDE HLVKEILK GVNGYVLKKDT  ELL AI+ V  GK+YLS+D+N ML+ +L  PDEGKLLT REREIL+LI+KEYTN+DIAEELFISERTVETHRKNIF+KT TNS+VGLIKFAYANNLI
Sbjct:   12 PEIKIIVLSMHDESHLVKEILKEGVNGYVLKKDTKDELLEAIYSVRGGKMYLSNDINSMLVKSLYEPDEGKLLTSREREILQLISKEYTNRDIAEELFISERTVETHRKNIFRKTKTNSIVGLIKFAYANNLI 144          
BLAST of mRNA_P-wetherbeei_contig57600.1.1 vs. uniprot
Match: S2DQZ8_INDAL (Receiver component of a two-component response regulator n=2 Tax=Cyclobacteriaceae TaxID=563798 RepID=S2DQZ8_INDAL)

HSP 1 Score: 206 bits (525), Expect = 1.470e-65
Identity = 101/133 (75.94%), Postives = 121/133 (90.98%), Query Frame = 1
Query:    1 PNTKIILLSMHDEVHLVKEILKAGVNGYVLKKDTHKELLNAIHDVSNGKVYLSSDVNKMLITNLNNPDEGKLLTDREREILKLIAKEYTNKDIAEELFISERTVETHRKNIFKKTATNSLVGLIKFAYANNLI 399
            P+TKI++LSMHDE HLVKEILK GV+GYVLK D+H+ELL AI  + NGK+YLS+D+N+++I +L  PDE +LLTDREREILKLIAKE++NKDIAE+LFISERTVETHRKNIF+KT TN+LVGLIKFAYANNLI
Sbjct:   73 PDTKILMLSMHDETHLVKEILKEGVSGYVLKNDSHRELLQAIETIKNGKIYLSNDINRIIINSLQFPDEERLLTDREREILKLIAKEFSNKDIAEQLFISERTVETHRKNIFRKTKTNTLVGLIKFAYANNLI 205          
BLAST of mRNA_P-wetherbeei_contig57600.1.1 vs. uniprot
Match: A0A1N7JJW8_9BACT (Two component transcriptional regulator, LuxR family n=3 Tax=Belliella TaxID=232244 RepID=A0A1N7JJW8_9BACT)

HSP 1 Score: 205 bits (522), Expect = 4.200e-65
Identity = 102/133 (76.69%), Postives = 121/133 (90.98%), Query Frame = 1
Query:    1 PNTKIILLSMHDEVHLVKEILKAGVNGYVLKKDTHKELLNAIHDVSNGKVYLSSDVNKMLITNLNNPDEGKLLTDREREILKLIAKEYTNKDIAEELFISERTVETHRKNIFKKTATNSLVGLIKFAYANNLI 399
            P TKII+LSMHDEVHLVKEILK G+NGY+LK D+HKELL+AI  V  GK+YLS+D+NK++I +L  PDE ++LTDREREILKLIAKE++N+DIA++LFISERTVETHRKNIF+KT TNSLVGLIKFAYANNLI
Sbjct:   73 PITKIIMLSMHDEVHLVKEILKEGINGYILKNDSHKELLSAIAAVDAGKIYLSNDINKIIINSLQFPDEERMLTDREREILKLIAKEFSNRDIADQLFISERTVETHRKNIFRKTKTNSLVGLIKFAYANNLI 205          
BLAST of mRNA_P-wetherbeei_contig57600.1.1 vs. uniprot
Match: A0A1X7LFG0_9BACT (Two component transcriptional regulator, LuxR family n=2 Tax=Marivirga sericea TaxID=1028 RepID=A0A1X7LFG0_9BACT)

HSP 1 Score: 205 bits (522), Expect = 4.480e-65
Identity = 103/133 (77.44%), Postives = 120/133 (90.23%), Query Frame = 1
Query:    1 PNTKIILLSMHDEVHLVKEILKAGVNGYVLKKDTHKELLNAIHDVSNGKVYLSSDVNKMLITNLNNPDEGKLLTDREREILKLIAKEYTNKDIAEELFISERTVETHRKNIFKKTATNSLVGLIKFAYANNLI 399
            P TKII+LS HDEVHLVKEILK GV GY+LKKDTH+EL++AI  VS GK+++S+++N+ML+ +LN P+E KLLTDREREILKLIAKEYTNK IAE LFISERTVETHRKNIF+KT TNSLVGLIKF+YANNLI
Sbjct:   75 PQTKIIILSQHDEVHLVKEILKEGVQGYILKKDTHRELVSAITQVSRGKIFMSNEINQMLVESLNFPEEHKLLTDREREILKLIAKEYTNKMIAEALFISERTVETHRKNIFRKTKTNSLVGLIKFSYANNLI 207          
BLAST of mRNA_P-wetherbeei_contig57600.1.1 vs. uniprot
Match: UPI00191CD0C6 (response regulator transcription factor n=1 Tax=Marivirga atlantica TaxID=1548457 RepID=UPI00191CD0C6)

HSP 1 Score: 205 bits (521), Expect = 5.960e-65
Identity = 102/133 (76.69%), Postives = 119/133 (89.47%), Query Frame = 1
Query:    1 PNTKIILLSMHDEVHLVKEILKAGVNGYVLKKDTHKELLNAIHDVSNGKVYLSSDVNKMLITNLNNPDEGKLLTDREREILKLIAKEYTNKDIAEELFISERTVETHRKNIFKKTATNSLVGLIKFAYANNLI 399
            P  KII+LS HDEVHLVKEILK GV GY+LKKDTHKEL++AIH +S GK+++SS++NK+L+ +L+ PDE +LLTDREREILKLIA+EYTNK IAE LFISERTVETHRKNIF+KT TNSLVGLIKF YANNLI
Sbjct:   73 PKIKIIVLSQHDEVHLVKEILKEGVQGYILKKDTHKELISAIHQISEGKMFMSSEINKLLVDSLSFPDEHRLLTDREREILKLIAQEYTNKMIAEALFISERTVETHRKNIFRKTKTNSLVGLIKFGYANNLI 205          
BLAST of mRNA_P-wetherbeei_contig57600.1.1 vs. uniprot
Match: A0A5E8AXZ2_9BACT (Two component transcriptional regulator, LuxR family n=2 Tax=Imperialibacter TaxID=1649461 RepID=A0A5E8AXZ2_9BACT)

HSP 1 Score: 203 bits (517), Expect = 5.010e-64
Identity = 100/133 (75.19%), Postives = 117/133 (87.97%), Query Frame = 1
Query:    1 PNTKIILLSMHDEVHLVKEILKAGVNGYVLKKDTHKELLNAIHDVSNGKVYLSSDVNKMLITNLNNPDEGKLLTDREREILKLIAKEYTNKDIAEELFISERTVETHRKNIFKKTATNSLVGLIKFAYANNLI 399
            P  KI+++SMHDE HLVKEILK G+ GY+LKKD+ KEL+ A+  +  G+ YLS+++N +LI NL NPDEGKLLT+REREILKLIAKEYTNKDIAEELFISERTVETHRKNIF+KT TNSLVGLIKFAYANNL+
Sbjct:   96 PEVKILIMSMHDEGHLVKEILKEGIKGYLLKKDSQKELIAALDQIRAGRTYLSNEINTLLIQNLQNPDEGKLLTEREREILKLIAKEYTNKDIAEELFISERTVETHRKNIFRKTKTNSLVGLIKFAYANNLV 228          
BLAST of mRNA_P-wetherbeei_contig57600.1.1 vs. uniprot
Match: A0A2E8N3K1_9RICK (DNA-binding response regulator n=3 Tax=Bacteria TaxID=2 RepID=A0A2E8N3K1_9RICK)

HSP 1 Score: 201 bits (510), Expect = 4.500e-63
Identity = 100/133 (75.19%), Postives = 117/133 (87.97%), Query Frame = 1
Query:    1 PNTKIILLSMHDEVHLVKEILKAGVNGYVLKKDTHKELLNAIHDVSNGKVYLSSDVNKMLITNLNNPDEGKLLTDREREILKLIAKEYTNKDIAEELFISERTVETHRKNIFKKTATNSLVGLIKFAYANNLI 399
            P+ KI++LSMHDE HLVKEILK GV+GY++KKD+H EL+NAI+ + +GK YLSSDVN +LI  LN   E KLLTDREREILKLI+KE+TNK IAEELFISERTVETHRKNIF+KT TN+LVGLIK+AYANNLI
Sbjct:   88 PHIKILVLSMHDEAHLVKEILKEGVDGYLIKKDSHNELINAIYSIKSGKTYLSSDVNSILIKGLNGEGEQKLLTDREREILKLISKEFTNKQIAEELFISERTVETHRKNIFRKTGTNNLVGLIKYAYANNLI 220          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57600.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D4ILI2_9BACT2.040e-7186.36DNA-binding response regulator n=1 Tax=Cytophagale... [more]
A0A239F3X0_9BACT4.900e-6779.70Two component transcriptional regulator, LuxR fami... [more]
A0A401UAH1_9BACT8.930e-6780.45DNA-binding response regulator n=2 Tax=Chryseotale... [more]
A0A7Y7EEF0_9BACT2.870e-6678.95Response regulator transcription factor n=1 Tax=Cy... [more]
S2DQZ8_INDAL1.470e-6575.94Receiver component of a two-component response reg... [more]
A0A1N7JJW8_9BACT4.200e-6576.69Two component transcriptional regulator, LuxR fami... [more]
A0A1X7LFG0_9BACT4.480e-6577.44Two component transcriptional regulator, LuxR fami... [more]
UPI00191CD0C65.960e-6576.69response regulator transcription factor n=1 Tax=Ma... [more]
A0A5E8AXZ2_9BACT5.010e-6475.19Two component transcriptional regulator, LuxR fami... [more]
A0A2E8N3K1_9RICK4.500e-6375.19DNA-binding response regulator n=3 Tax=Bacteria Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57600contigP-wetherbeei_contig57600:107..508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1189612.A33Q_4421
PFAMsGerE,Response_reg
Model size402
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.47e-61
EggNOG OGsCOG2197@1|root,COG2197@2|Bacteria,4NQVA@976|Bacteroidetes,47QIT@768503|Cytophagia
DescriptionResponse regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
Cds size375
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186854.2930303-CDS-P-wetherbeei_contig57600:106..4811683186854.2930303-CDS-P-wetherbeei_contig57600:106..481Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57600 107..481 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186854.3023505-UTR-P-wetherbeei_contig57600:481..5081683186854.3023505-UTR-P-wetherbeei_contig57600:481..508Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig57600 482..508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57600.1.1prot_P-wetherbeei_contig57600.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57600 107..481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57600.1.1

>prot_P-wetherbeei_contig57600.1.1 ID=prot_P-wetherbeei_contig57600.1.1|Name=mRNA_P-wetherbeei_contig57600.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
MHDEVHLVKEILKAGVNGYVLKKDTHKELLNAIHDVSNGKVYLSSDVNKM
LITNLNNPDEGKLLTDREREILKLIAKEYTNKDIAEELFISERTVETHRK
NIFKKTATNSLVGLIKFAYANNLI*
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mRNA from alignment at P-wetherbeei_contig57600:107..508-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57600.1.1 ID=mRNA_P-wetherbeei_contig57600.1.1|Name=mRNA_P-wetherbeei_contig57600.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig57600:107..508- (Phaeothamnion wetherbeei SAG_119_79)
CCCAATACAAAGATTATTTTACTCAGCATGCACGATGAAGTGCACCTGGT AAAGGAAATTTTAAAAGCCGGAGTTAACGGTTATGTCTTGAAGAAAGACA CGCATAAAGAATTGCTAAATGCCATTCACGATGTAAGCAATGGCAAGGTT TACCTGAGCAGTGACGTGAACAAAATGCTTATCACGAACCTTAACAATCC CGATGAGGGCAAGCTGCTCACTGATCGTGAGCGCGAGATTCTTAAGCTTA TCGCGAAAGAGTACACCAACAAAGATATTGCGGAAGAGCTTTTCATCAGC GAGCGTACAGTCGAAACGCATCGCAAGAATATCTTTAAGAAAACGGCTAC TAACTCGTTAGTGGGCCTAATTAAGTTCGCGTACGCGAACAATCTAATTT GA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57600:107..508-

>mRNA_P-wetherbeei_contig57600.1.1 ID=mRNA_P-wetherbeei_contig57600.1.1|Name=mRNA_P-wetherbeei_contig57600.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig57600:107..508- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGATGAAGTGCACCTGGTAAAGGAAATTTTAAAAGCCGGAGTTAA
CGGTTATGTCTTGAAGAAAGACACGCATAAAGAATTGCTAAATGCCATTC
ACGATGTAAGCAATGGCAAGGTTTACCTGAGCAGTGACGTGAACAAAATG
CTTATCACGAACCTTAACAATCCCGATGAGGGCAAGCTGCTCACTGATCG
TGAGCGCGAGATTCTTAAGCTTATCGCGAAAGAGTACACCAACAAAGATA
TTGCGGAAGAGCTTTTCATCAGCGAGCGTACAGTCGAAACGCATCGCAAG
AATATCTTTAAGAAAACGGCTACTAACTCGTTAGTGGGCCTAATTAAGTT
CGCGTACGCGAACAATCTAATTTGA
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