mRNA_P-wetherbeei_contig5748.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5748.4.1
Unique NamemRNA_P-wetherbeei_contig5748.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5748.4.1 vs. uniprot
Match: A0A835ZMI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMI0_9STRA)

HSP 1 Score: 102 bits (255), Expect = 9.330e-24
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:    1 GPFIELHPVGLGTYNGHPAVYLASTPRLVDPRGDVLPIPVSEPAAKVLEDAMSAEEMPKIRVIAACMELVNRDGDLYDTLPWSWGLSGMAKRDAFSRLSQG 303
            G ++EL PVGLG YNG PA +L+ +  LV PR ++LP+P+   A  +L  AM    + K+ + AA   L+NRDG LYD LPW WG + +AKR AF+R+S G
Sbjct:   29 GDWLELSPVGLGRYNGEPAAFLSRSQSLVSPRTELLPLPIDSKACDMLSQAMGQAPLAKLALAAAAQSLLNRDGGLYDNLPWEWG-APLAKRAAFARVSSG 128
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BLAST of mRNA_P-wetherbeei_contig5748.4.1 vs. uniprot
Match: D7G1S6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1S6_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 3.640e-22
Identity = 49/101 (48.51%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:    1 GPFIELHPVGLGTYNGHPAVYLASTPRLVDPRGDVLPIPVSEPAAKVLEDAMSAEEMPKIRVIAACMELVNRDGDLYDTLPWSWGLSGMAKRDAFSRLSQG 303
            G F    PVGLG YNG PAV+LA+  R++DPR +VLPIP+ E AA +L +AM   ++    ++  C  L  R+G +YD +PW W    MAKR+AF R SQG
Sbjct:   20 GRFAACWPVGLGQYNGGPAVFLANKRRILDPREEVLPIPIPEEAAPLLSEAMQPRDVSVAVLLRTCSPLFGRNGGMYDNIPWEWSGDDMAKREAFQR-SQG 119
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BLAST of mRNA_P-wetherbeei_contig5748.4.1 vs. uniprot
Match: A0A8J6C8W8_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C8W8_DIALT)

HSP 1 Score: 71.2 bits (173), Expect = 2.720e-12
Identity = 40/99 (40.40%), Postives = 53/99 (53.54%), Query Frame = 1 
Query:    4 PFIELHPVGLGTYNGHPAVYLASTPR-LVDPRGDVLPIPVSEPAAKVLEDAMSAEEMPKIRVIAACMELVNRDGDLYDTLPWSWGLSGMAKRDAFSRLS 297
            P + + PVG+GTY G   ++LA      +   G V P PVSEP   +LE           R +A   +L NRDG LYD+LPW WG     K DAF++L+
Sbjct:   25 PRVAVRPVGVGTYGGLRCIFLAEAAAGPLAACGRVFPAPVSEPFCAMLECVFDGR-----RSLAGASKLANRDGGLYDSLPWEWGRGERPKADAFAQLA 118
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BLAST of mRNA_P-wetherbeei_contig5748.4.1 vs. uniprot
Match: A0A8J2SZT1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZT1_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.870e-10
Identity = 31/95 (32.63%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:   10 IELHPVGLGTYNGHPAVYLASTPRLVDPRGDVLPIPVSEPAAKVLEDAMSAEEMPKIRVIAACMELVNRDGDLYDTLPWSWGLSGMAKRDAFSRL 294
            +    +G+G Y+G  A+++A        + + LP+PV   AA  +E A+  +E  K++ +     LVNRDG ++D LP++ G S  AK+D + R+
Sbjct:   31 VSCRALGMGDYDGGAAIFMAPA-ATGGTKVEALPVPVGADAAIAMEKALKGQEYGKVQTLTVAQGLVNRDGGVFDNLPYAMGKSKFAKKDLYDRI 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5748.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZMI0_9STRA9.330e-2448.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G1S6_ECTSI3.640e-2248.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J6C8W8_DIALT2.720e-1240.40Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A8J2SZT1_9STRA3.870e-1032.63Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5748contigP-wetherbeei_contig5748:3155..3648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size303
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_004320.1
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186852.3691318-CDS-P-wetherbeei_contig5748:3154..33771683186852.3691318-CDS-P-wetherbeei_contig5748:3154..3377Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5748 3155..3377 +
1683186852.381092-CDS-P-wetherbeei_contig5748:3568..36481683186852.381092-CDS-P-wetherbeei_contig5748:3568..3648Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5748 3569..3648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5748.4.1prot_P-wetherbeei_contig5748.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5748 3155..3648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5748.4.1

>prot_P-wetherbeei_contig5748.4.1 ID=prot_P-wetherbeei_contig5748.4.1|Name=mRNA_P-wetherbeei_contig5748.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
GPFIELHPVGLGTYNGHPAVYLASTPRLVDPRGDVLPIPVSEPAAKVLED
AMSAEEMPKIRVIAACMELVNRDGDLYDTLPWSWGLSGMAKRDAFSRLSQ
G
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mRNA from alignment at P-wetherbeei_contig5748:3155..3648+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5748.4.1 ID=mRNA_P-wetherbeei_contig5748.4.1|Name=mRNA_P-wetherbeei_contig5748.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=494bp|location=Sequence derived from alignment at P-wetherbeei_contig5748:3155..3648+ (Phaeothamnion wetherbeei SAG_119_79)
GGCCCTTTTATCGAATTGCACCCGGTCGGCCTCGGCACCTACAACGGCCA
TCCGGCCGTCTACCTGGCGTCCACACCGCGCCTCGTCGACCCGCGCGGCG
ACGTCCTGCCCATTCCCGTGTCGGAGCCAGCGGCGAAGGTTCTCGAAGAC
GCCATGAGCGCCGAGGAGATGCCGAAGATTCGCGTGATAGCCGCCTGCAT
GGAGCTCGTCAACCGCGACGGAGGTGCTTCGCGGGCGCCGACTGAATGTG
ATAGCCGTTGCAGCCGCTGGCCTGACAGCACACGTTCCTTTGCTTCGTTG
CTACGATCTGGGCCATCCAAGCTAGCCGCCTTCACCTCTCTGACGTATTG
TTCGTTGTTCTTCCTGCCCCCATGCCGTCCTGGTATGTTTCTTGTTCTGC
TTTCTGCCGGGCAGATCTGTACGACACGCTGCCGTGGTCGTGGGGGCTCA
GCGGCATGGCGAAGCGCGACGCCTTCTCGCGGCTGTCGCAGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5748:3155..3648+

>mRNA_P-wetherbeei_contig5748.4.1 ID=mRNA_P-wetherbeei_contig5748.4.1|Name=mRNA_P-wetherbeei_contig5748.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig5748:3155..3648+ (Phaeothamnion wetherbeei SAG_119_79)
GGCCCTTTTATCGAATTGCACCCGGTCGGCCTCGGCACCTACAACGGCCA
TCCGGCCGTCTACCTGGCGTCCACACCGCGCCTCGTCGACCCGCGCGGCG
ACGTCCTGCCCATTCCCGTGTCGGAGCCAGCGGCGAAGGTTCTCGAAGAC
GCCATGAGCGCCGAGGAGATGCCGAAGATTCGCGTGATAGCCGCCTGCAT
GGAGCTCGTCAACCGCGACGGAGATCTGTACGACACGCTGCCGTGGTCGT
GGGGGCTCAGCGGCATGGCGAAGCGCGACGCCTTCTCGCGGCTGTCGCAG
GGC
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