mRNA_P-wetherbeei_contig57390.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57390.1.1
Unique NamemRNA_P-wetherbeei_contig57390.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57390.1.1 vs. uniprot
Match: A0A140GVD2_9HYPH (ABC transporter ATP-binding protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A140GVD2_9HYPH)

HSP 1 Score: 283 bits (723), Expect = 1.560e-94
Identity = 145/170 (85.29%), Postives = 158/170 (92.94%), Query Frame = 1
Query:    1 VGLVGPSGSGKSTLLMVMAGLERSDSGSITVAGENLTALDEDALARFRGRNVGIVFQSFHLIPTMTALENVAVPLELAGNGDAFRLAREELAKVGLEERLNHYPAQLSGGEQQRVALARALAPNPAILVADEPTGNLDENTGKQIVDLMFAGHIERGTTLVLVTHDAALA 510
            +GLVGPSGSGK+TLLMV+AGLER+DSG I VAG +L  LDEDALARFRGRNVGIVFQSFHLIPTMTALENVAVPLELAG+GDA   AR+ELAKVGL ERL+HYPAQLSGGEQQRVALARALAP+PAILVADEPTGNLDE TGKQI+ L+FAGH+ERGTTL+LVTHD ALA
Sbjct:   48 IGLVGPSGSGKTTLLMVLAGLERADSGQIMVAGSDLRKLDEDALARFRGRNVGIVFQSFHLIPTMTALENVAVPLELAGHGDAQTRARDELAKVGLAERLHHYPAQLSGGEQQRVALARALAPDPAILVADEPTGNLDEATGKQIIQLLFAGHVERGTTLILVTHDNALA 217          
BLAST of mRNA_P-wetherbeei_contig57390.1.1 vs. uniprot
Match: A0A833GHD8_9HYPH (ABC transporter ATP-binding protein n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833GHD8_9HYPH)

HSP 1 Score: 281 bits (719), Expect = 5.740e-94
Identity = 145/170 (85.29%), Postives = 156/170 (91.76%), Query Frame = 1
Query:    1 VGLVGPSGSGKSTLLMVMAGLERSDSGSITVAGENLTALDEDALARFRGRNVGIVFQSFHLIPTMTALENVAVPLELAGNGDAFRLAREELAKVGLEERLNHYPAQLSGGEQQRVALARALAPNPAILVADEPTGNLDENTGKQIVDLMFAGHIERGTTLVLVTHDAALA 510
            +GLVGPSGSGKSTLLMV+AGLERSDSG++TVAG++LT LDEDALARFRGR+VGIVFQSFHLIPTMTALENVAVPLELAG GDA+  A  EL  VGL ERL HYPAQLSGGEQQRVALARALAPNPAILVADEPTGNLDE TG+QI+DL+F GHIERG TLVLVTHD ALA
Sbjct:   44 IGLVGPSGSGKSTLLMVLAGLERSDSGTVTVAGKDLTGLDEDALARFRGRHVGIVFQSFHLIPTMTALENVAVPLELAGLGDAYDRALAELRNVGLAERLAHYPAQLSGGEQQRVALARALAPNPAILVADEPTGNLDETTGRQIIDLLFKGHIERGATLVLVTHDPALA 213          
BLAST of mRNA_P-wetherbeei_contig57390.1.1 vs. uniprot
Match: A0A1W6ZQ98_9HYPH (ABC transporter ATP-binding protein n=1 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W6ZQ98_9HYPH)

HSP 1 Score: 278 bits (711), Expect = 1.240e-92
Identity = 142/170 (83.53%), Postives = 157/170 (92.35%), Query Frame = 1
Query:    1 VGLVGPSGSGKSTLLMVMAGLERSDSGSITVAGENLTALDEDALARFRGRNVGIVFQSFHLIPTMTALENVAVPLELAGNGDAFRLAREELAKVGLEERLNHYPAQLSGGEQQRVALARALAPNPAILVADEPTGNLDENTGKQIVDLMFAGHIERGTTLVLVTHDAALA 510
            +GLVGPSGSGKSTLLMV+AGLER+D+GSITVAGE+LT LDEDALARFRGRNVGIVFQSFHLIPTMTALENVAVPLELAG  DA   A +ELA VGL+ERL+HYPAQLSGGEQQRVALARALAPNPAILVADEPTGNLD+ TG Q+V+L+F GH+ERG TL+LVTHD +LA
Sbjct:   44 IGLVGPSGSGKSTLLMVLAGLERTDTGSITVAGEDLTKLDEDALARFRGRNVGIVFQSFHLIPTMTALENVAVPLELAGVPDAHERAAKELAGVGLKERLSHYPAQLSGGEQQRVALARALAPNPAILVADEPTGNLDDKTGSQVVELLFKGHVERGMTLILVTHDPSLA 213          
BLAST of mRNA_P-wetherbeei_contig57390.1.1 vs. uniprot
Match: A0A346A0A6_9HYPH (ATP-binding cassette domain-containing protein n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A346A0A6_9HYPH)

HSP 1 Score: 277 bits (708), Expect = 2.000e-92
Identity = 142/170 (83.53%), Postives = 153/170 (90.00%), Query Frame = 1
Query:    1 VGLVGPSGSGKSTLLMVMAGLERSDSGSITVAGENLTALDEDALARFRGRNVGIVFQSFHLIPTMTALENVAVPLELAGNGDAFRLAREELAKVGLEERLNHYPAQLSGGEQQRVALARALAPNPAILVADEPTGNLDENTGKQIVDLMFAGHIERGTTLVLVTHDAALA 510
            +GL+GPSGSGKSTLLMVMAGLE++DSG++TVAGENLT LDEDALARFRGRN+GIVFQSFHLIPTMTALENVAVP+EL G  DA   AREEL  VGL  RLNHYPAQLSGGEQQRVA+ARALAPNPAILVADEPTGNLDE+TGKQIVDL+F G   R TTLVLVTHDA LA
Sbjct:   43 IGLIGPSGSGKSTLLMVMAGLEQADSGTVTVAGENLTGLDEDALARFRGRNIGIVFQSFHLIPTMTALENVAVPMELTGAPDAQERAREELVAVGLGARLNHYPAQLSGGEQQRVAVARALAPNPAILVADEPTGNLDEDTGKQIVDLLFEGQARRNTTLVLVTHDAGLA 212          
BLAST of mRNA_P-wetherbeei_contig57390.1.1 vs. uniprot
Match: A0A363TKA6_9BRAD (ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TKA6_9BRAD)

HSP 1 Score: 274 bits (701), Expect = 3.150e-91
Identity = 142/170 (83.53%), Postives = 154/170 (90.59%), Query Frame = 1
Query:    1 VGLVGPSGSGKSTLLMVMAGLERSDSGSITVAGENLTALDEDALARFRGRNVGIVFQSFHLIPTMTALENVAVPLELAGNGDAFRLAREELAKVGLEERLNHYPAQLSGGEQQRVALARALAPNPAILVADEPTGNLDENTGKQIVDLMFAGHIERGTTLVLVTHDAALA 510
            +GLVGPSGSGKSTLLMVMAGLER DSG + VAG +  ALDEDALARFRGR+VGIVFQSFHLIPTMTALENVAVPLELAG  DAF  A  ELA VGL +R++HYPA+LSGGEQQRVALARALAP+PAILVADEPTGNLDE TG++IV+LMFAGH ERGTTLVLVTHDAALA
Sbjct:   46 IGLVGPSGSGKSTLLMVMAGLERPDSGRVRVAGADFAALDEDALARFRGRHVGIVFQSFHLIPTMTALENVAVPLELAGLDDAFARAERELASVGLADRVHHYPAELSGGEQQRVALARALAPHPAILVADEPTGNLDEATGREIVELMFAGHAERGTTLVLVTHDAALA 215          
BLAST of mRNA_P-wetherbeei_contig57390.1.1 vs. uniprot
Match: A0A6N7GTB0_9HYPH (ATP-binding cassette domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GTB0_9HYPH)

HSP 1 Score: 274 bits (701), Expect = 3.360e-91
Identity = 142/170 (83.53%), Postives = 152/170 (89.41%), Query Frame = 1
Query:    1 VGLVGPSGSGKSTLLMVMAGLERSDSGSITVAGENLTALDEDALARFRGRNVGIVFQSFHLIPTMTALENVAVPLELAGNGDAFRLAREELAKVGLEERLNHYPAQLSGGEQQRVALARALAPNPAILVADEPTGNLDENTGKQIVDLMFAGHIERGTTLVLVTHDAALA 510
            +G+VGPSGSGKSTLLMVMAGLER D+GS+TVAGE L AL ED LARFRGRNVGIVFQSFHLIPTMTALENVAVPLELAG  DA   A +ELA VGL ER +HYPA+LSGGEQQRVALARALAPNPAIL+ADEPTGNLDE TG +IVDLMFAGH +RGTTLVLVTHD ALA
Sbjct:   45 IGMVGPSGSGKSTLLMVMAGLERPDTGSVTVAGEALDALGEDELARFRGRNVGIVFQSFHLIPTMTALENVAVPLELAGTSDAHERAAQELAAVGLSERASHYPAELSGGEQQRVALARALAPNPAILIADEPTGNLDETTGAEIVDLMFAGHDKRGTTLVLVTHDNALA 214          
BLAST of mRNA_P-wetherbeei_contig57390.1.1 vs. uniprot
Match: A0A537V2L6_9PROT (ABC transporter ATP-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537V2L6_9PROT)

HSP 1 Score: 270 bits (691), Expect = 1.190e-89
Identity = 139/170 (81.76%), Postives = 152/170 (89.41%), Query Frame = 1
Query:    1 VGLVGPSGSGKSTLLMVMAGLERSDSGSITVAGENLTALDEDALARFRGRNVGIVFQSFHLIPTMTALENVAVPLELAGNGDAFRLAREELAKVGLEERLNHYPAQLSGGEQQRVALARALAPNPAILVADEPTGNLDENTGKQIVDLMFAGHIERGTTLVLVTHDAALA 510
            +GLVGPSGSGKSTLLMV AGLER+D+GS+ VAGE L  L EDALARFRGRNVGIVFQSFHLIPTMTALEN+AVPLELAG GDA   A  ELA VGL ER +HYPA+LSGGEQQRVALARALAPNPAIL+ADEPTGNLDE TG +I+DL+FAGH +RGTTLVLVT+DAALA
Sbjct:   46 IGLVGPSGSGKSTLLMVTAGLERADTGSVVVAGEALGTLSEDALARFRGRNVGIVFQSFHLIPTMTALENIAVPLELAGLGDAHERAARELAAVGLSERQHHYPAELSGGEQQRVALARALAPNPAILIADEPTGNLDEATGAEIIDLLFAGHAQRGTTLVLVTYDAALA 215          
BLAST of mRNA_P-wetherbeei_contig57390.1.1 vs. uniprot
Match: K8NZI6_9BRAD (ABC transporter domain-containing protein n=9 Tax=Bradyrhizobiaceae TaxID=41294 RepID=K8NZI6_9BRAD)

HSP 1 Score: 269 bits (688), Expect = 4.170e-89
Identity = 140/170 (82.35%), Postives = 152/170 (89.41%), Query Frame = 1
Query:    1 VGLVGPSGSGKSTLLMVMAGLERSDSGSITVAGENLTALDEDALARFRGRNVGIVFQSFHLIPTMTALENVAVPLELAGNGDAFRLAREELAKVGLEERLNHYPAQLSGGEQQRVALARALAPNPAILVADEPTGNLDENTGKQIVDLMFAGHIERGTTLVLVTHDAALA 510
            VGL+GPSGSGKSTLLMVMAGLER DSG + V G +  ALDED LARFRGR+VGIVFQSFHLIPTMTALENVAVPLELAG  DA   A +ELA VGL ERL+HYP+QLSGGEQQRVALARA+AP+PAILVADEPTGNLDE+TGKQIVDL+FA H+ERG TLVLVTHDAALA
Sbjct:   50 VGLIGPSGSGKSTLLMVMAGLERPDSGEVVVNGVSFNALDEDGLARFRGRHVGIVFQSFHLIPTMTALENVAVPLELAGRADANARAAQELAGVGLGERLHHYPSQLSGGEQQRVALARAMAPDPAILVADEPTGNLDESTGKQIVDLLFAKHLERGMTLVLVTHDAALA 219          
BLAST of mRNA_P-wetherbeei_contig57390.1.1 vs. uniprot
Match: A0A0S3PR63_9BRAD (Putative ABC transporter ATP-binding protein/MT1014 n=1 Tax=Variibacter gotjawalensis TaxID=1333996 RepID=A0A0S3PR63_9BRAD)

HSP 1 Score: 268 bits (685), Expect = 7.990e-89
Identity = 141/170 (82.94%), Postives = 150/170 (88.24%), Query Frame = 1
Query:    1 VGLVGPSGSGKSTLLMVMAGLERSDSGSITVAGENLTALDEDALARFRGRNVGIVFQSFHLIPTMTALENVAVPLELAGNGDAFRLAREELAKVGLEERLNHYPAQLSGGEQQRVALARALAPNPAILVADEPTGNLDENTGKQIVDLMFAGHIERGTTLVLVTHDAALA 510
            VGL GPSGSGKSTLLMVMAGLER D GS+ VAG +L AL+ED LARFRGR VGIVFQSFHLIPTMTALENVAVPLELAG  DAF  AR+EL  VGL ERL+HYPAQLSGGEQQRVA+ARALAPNPAILVADEPTGNLDE TG+QIVDL+FAGH ER  TLVLVTHD +LA
Sbjct:   41 VGLTGPSGSGKSTLLMVMAGLERPDVGSLRVAGTDLGALNEDGLARFRGRQVGIVFQSFHLIPTMTALENVAVPLELAGAPDAFERARKELVAVGLGERLSHYPAQLSGGEQQRVAIARALAPNPAILVADEPTGNLDEGTGRQIVDLLFAGHAERRMTLVLVTHDPSLA 210          
BLAST of mRNA_P-wetherbeei_contig57390.1.1 vs. uniprot
Match: E6VJT3_RHOPX (ABC transporter related protein n=10 Tax=Bradyrhizobiaceae TaxID=41294 RepID=E6VJT3_RHOPX)

HSP 1 Score: 268 bits (684), Expect = 1.640e-88
Identity = 140/170 (82.35%), Postives = 148/170 (87.06%), Query Frame = 1
Query:    1 VGLVGPSGSGKSTLLMVMAGLERSDSGSITVAGENLTALDEDALARFRGRNVGIVFQSFHLIPTMTALENVAVPLELAGNGDAFRLAREELAKVGLEERLNHYPAQLSGGEQQRVALARALAPNPAILVADEPTGNLDENTGKQIVDLMFAGHIERGTTLVLVTHDAALA 510
            +GL+GPSGSGKSTLLMVMAGLER DSG + V G     LDEDALARFRGR +GIVFQSFHLIPTMTALENVAVPLELAG  DA   A  ELA VGL ERL+HYPAQLSGGEQQRVALARALAP+PAILVADEPTGNLDE TGKQIVDL+FA H+ERG TLVLVTHDAALA
Sbjct:   50 IGLIGPSGSGKSTLLMVMAGLERPDSGEVVVDGTAFNGLDEDALARFRGRQIGIVFQSFHLIPTMTALENVAVPLELAGQTDAADRAARELASVGLGERLHHYPAQLSGGEQQRVALARALAPDPAILVADEPTGNLDEATGKQIVDLLFAKHVERGMTLVLVTHDAALA 219          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57390.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A140GVD2_9HYPH1.560e-9485.29ABC transporter ATP-binding protein n=1 Tax=Rhodop... [more]
A0A833GHD8_9HYPH5.740e-9485.29ABC transporter ATP-binding protein n=1 Tax=Pseudo... [more]
A0A1W6ZQ98_9HYPH1.240e-9283.53ABC transporter ATP-binding protein n=1 Tax=Pseudo... [more]
A0A346A0A6_9HYPH2.000e-9283.53ATP-binding cassette domain-containing protein n=1... [more]
A0A363TKA6_9BRAD3.150e-9183.53ABC transporter ATP-binding protein n=1 Tax=Bradyr... [more]
A0A6N7GTB0_9HYPH3.360e-9183.53ATP-binding cassette domain-containing protein n=1... [more]
A0A537V2L6_9PROT1.190e-8981.76ABC transporter ATP-binding protein n=1 Tax=Alphap... [more]
K8NZI6_9BRAD4.170e-8982.35ABC transporter domain-containing protein n=9 Tax=... [more]
A0A0S3PR63_9BRAD7.990e-8982.94Putative ABC transporter ATP-binding protein/MT101... [more]
E6VJT3_RHOPX1.640e-8882.35ABC transporter related protein n=10 Tax=Bradyrhiz... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57390contigP-wetherbeei_contig57390:1..510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1197906.CAJQ02000029_gene3899
Preferred nameybbA
PFAMsABC_tran
Model size510
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02003
KEGG TC3.A.1
KEGG ModuleM00258
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Exons1
Evalue6.84e-90
EggNOG OGsCOG4181@1|root,COG4181@2|Bacteria,1MXG9@1224|Proteobacteria,2TS0J@28211|Alphaproteobacteria,3JS8X@41294|Bradyrhizobiaceae
DescriptionABC transporter
Cds size510
COG categoryQ
BRITEko00000,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186851.3306339-CDS-P-wetherbeei_contig57390:0..5101683186851.3306339-CDS-P-wetherbeei_contig57390:0..510Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57390 1..510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57390.1.1prot_P-wetherbeei_contig57390.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57390 1..510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57390.1.1

>prot_P-wetherbeei_contig57390.1.1 ID=prot_P-wetherbeei_contig57390.1.1|Name=mRNA_P-wetherbeei_contig57390.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
VGLVGPSGSGKSTLLMVMAGLERSDSGSITVAGENLTALDEDALARFRGR
NVGIVFQSFHLIPTMTALENVAVPLELAGNGDAFRLAREELAKVGLEERL
NHYPAQLSGGEQQRVALARALAPNPAILVADEPTGNLDENTGKQIVDLMF
AGHIERGTTLVLVTHDAALA
back to top

mRNA from alignment at P-wetherbeei_contig57390:1..510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57390.1.1 ID=mRNA_P-wetherbeei_contig57390.1.1|Name=mRNA_P-wetherbeei_contig57390.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig57390:1..510+ (Phaeothamnion wetherbeei SAG_119_79)
GTTGGCCTGGTCGGCCCGTCCGGCTCCGGCAAGTCGACCCTGCTGATGGT GATGGCCGGGCTGGAGCGTTCCGACAGCGGCTCGATCACGGTCGCCGGCG AGAACCTGACCGCGCTCGACGAGGATGCGCTCGCGCGCTTTCGCGGACGC AACGTCGGCATCGTCTTCCAGTCTTTCCATCTGATCCCGACCATGACCGC GCTCGAGAACGTCGCGGTACCGCTGGAGCTGGCCGGCAACGGCGACGCCT TCCGCCTCGCGCGCGAGGAACTCGCGAAGGTCGGTCTCGAAGAGCGTCTC AATCATTACCCCGCGCAACTTTCCGGCGGCGAGCAGCAGCGCGTCGCGCT CGCCCGCGCGCTGGCGCCGAACCCCGCGATCCTTGTGGCCGACGAGCCGA CCGGCAATCTCGACGAGAACACCGGCAAGCAGATCGTCGATCTGATGTTC GCAGGTCACATCGAGCGCGGCACGACATTGGTTCTGGTCACGCACGACGC GGCGCTGGCA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig57390:1..510+

>mRNA_P-wetherbeei_contig57390.1.1 ID=mRNA_P-wetherbeei_contig57390.1.1|Name=mRNA_P-wetherbeei_contig57390.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig57390:1..510+ (Phaeothamnion wetherbeei SAG_119_79)
GTTGGCCTGGTCGGCCCGTCCGGCTCCGGCAAGTCGACCCTGCTGATGGT
GATGGCCGGGCTGGAGCGTTCCGACAGCGGCTCGATCACGGTCGCCGGCG
AGAACCTGACCGCGCTCGACGAGGATGCGCTCGCGCGCTTTCGCGGACGC
AACGTCGGCATCGTCTTCCAGTCTTTCCATCTGATCCCGACCATGACCGC
GCTCGAGAACGTCGCGGTACCGCTGGAGCTGGCCGGCAACGGCGACGCCT
TCCGCCTCGCGCGCGAGGAACTCGCGAAGGTCGGTCTCGAAGAGCGTCTC
AATCATTACCCCGCGCAACTTTCCGGCGGCGAGCAGCAGCGCGTCGCGCT
CGCCCGCGCGCTGGCGCCGAACCCCGCGATCCTTGTGGCCGACGAGCCGA
CCGGCAATCTCGACGAGAACACCGGCAAGCAGATCGTCGATCTGATGTTC
GCAGGTCACATCGAGCGCGGCACGACATTGGTTCTGGTCACGCACGACGC
GGCGCTGGCA
back to top