mRNA_P-wetherbeei_contig57221.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57221.1.1
Unique NamemRNA_P-wetherbeei_contig57221.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57221.1.1 vs. uniprot
Match: A0A7C2RAC2_9HYPH (Alpha/beta fold hydrolase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2RAC2_9HYPH)

HSP 1 Score: 87.0 bits (214), Expect = 6.160e-18
Identity = 52/134 (38.81%), Postives = 70/134 (52.24%), Query Frame = 1 
Query:    1 PGFGESDRPPAPINFAAVGKVVTAGLREILPSSAAFDLSGFSFGSHTIQYVANAMGSRVGTAVLVTAHMLGPMLAQPSQLLERWRDVTDPAERERILKRNLGSLMLAHEASMDPLALHIYASDVVRARIRPATF 402
            PG G+S  PP P+  A V  VV AGL  + P      L+GFSFG H    VA  +G RV    LV    LG + A P +   + R     AE   + ++NL  LM A  +++DPLA+H+ A ++ RAR R   F
Sbjct:   82 PGLGDSAMPPEPLVPATVADVVAAGLERLFPGGQRLRLAGFSFGGHVAGLVAARLGERVAGLTLVGVAALG-LRADPREPFWKVRAGMSEAEIAAVYRQNLAVLMFADPSNIDPLAIHLQAENIRRARFRSRPF 214
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BLAST of mRNA_P-wetherbeei_contig57221.1.1 vs. uniprot
Match: UPI001CCEB8F9 (alpha/beta hydrolase n=1 Tax=Afifella sp. IM 167 TaxID=2033586 RepID=UPI001CCEB8F9)

HSP 1 Score: 73.9 bits (180), Expect = 4.130e-13
Identity = 49/130 (37.69%), Postives = 71/130 (54.62%), Query Frame = 1 
Query:    1 PGFGESDRPPAPINFAAVGKVVTAGLREILPSSAAFDLSGFSFGSHTIQYVANAMGSRVGTAVLVTAHMLGPMLAQPSQLLERWRDVTDPAERERILKRNLGSLMLAHEASMDPLALHIYASDVVRARIR 390
            PGFG+SD P   ++  +V   V  G+ E+L   + FDL GFSFG      +A      +   V V+    G  + + S  L+  R+VTDP ERE +L+ NL +LML+  A+ D LAL I   ++ R R+R
Sbjct:   78 PGFGDSDLPEDVVDADSVAPHVCNGISEVLDDRS-FDLVGFSFGGLVAGLIAAEAPVNLDRLVFVSVAGFG--IIEKSPQLKSLRNVTDPQEREDVLRFNLNALMLSDPAAADDLALLIQQKNIPRDRVR 204
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BLAST of mRNA_P-wetherbeei_contig57221.1.1 vs. uniprot
Match: A0A254RC31_9RHOB (AB hydrolase-1 domain-containing protein n=2 Tax=Oceanicola sp. 22II-s10i TaxID=1317116 RepID=A0A254RC31_9RHOB)

HSP 1 Score: 62.8 bits (151), Expect = 5.220e-9
Identity = 46/131 (35.11%), Postives = 70/131 (53.44%), Query Frame = 1 
Query:    1 PGFGESDRPPAPINFAAVGKVVTAGLREILPSSAAFDLSGFSFG-SHTIQYVANAMGSRVGTAVLVTAHMLGPMLAQPSQLLERWRDVTDPAERERILKRNLGSLMLAHEASMDPLALHIYASDVVRARIR 390
            PGFG SD P  P++F A+   V AGL +I+ S A +DL  FS+G S T + +    G +   A+   A    P++ Q    + + R +   A R+     NLGS+M+A  A +DP+AL I   +   +R+R
Sbjct:   85 PGFGLSDMPAMPLDFPAMAAEVAAGLDQIIGSEAVYDLVAFSYGGSITAEILQRDPGRQRRIALCAPAGFGRPLMPQ----MRKVRGLEGEALRQAH-HDNLGSIMIADPARIDPMALCIQMLNSGESRLR 210
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BLAST of mRNA_P-wetherbeei_contig57221.1.1 vs. uniprot
Match: UPI000949A8C8 (alpha/beta fold hydrolase n=1 Tax=Acuticoccus yangtzensis TaxID=1443441 RepID=UPI000949A8C8)

HSP 1 Score: 57.8 bits (138), Expect = 3.440e-7
Identity = 46/132 (34.85%), Postives = 69/132 (52.27%), Query Frame = 1 
Query:    1 PGFGESDRP-PAPINFAAVGKVVTAGLREILPSSAAFD---LSGFSFGSHTIQYVANAMGSRVGTAVLVTAHMLGPMLAQPSQLLERWRDVTDPAERERILKRNLGSLMLAHEASMDPLALHIYASDVVRAR 384
            PGFG+S  P P P    A+  V+ A + E L +    +   ++GFSFG       A  +  R+   V++ A   G  L  P  L  + R+V +P E  ++ + NL ++M A  A +DPLA+HI A +V RAR
Sbjct:   86 PGFGDSADPGPFPDEGVALSDVIAAPVVEGLTTLLGREHVSIAGFSFGGVVAARAAAMLPGRLDHLVIIGAMGFGFRLGPPPPL-RKVRNV-EPDELAQVHRANLAAMMFADPAKIDPLAVHIQALNVPRAR 215
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57221.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7C2RAC2_9HYPH6.160e-1838.81Alpha/beta fold hydrolase n=1 Tax=Hyphomicrobiales... [more]
UPI001CCEB8F94.130e-1337.69alpha/beta hydrolase n=1 Tax=Afifella sp. IM 167 T... [more]
A0A254RC31_9RHOB5.220e-935.11AB hydrolase-1 domain-containing protein n=2 Tax=O... [more]
UPI000949A8C83.440e-734.85alpha/beta fold hydrolase n=1 Tax=Acuticoccus yang... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57221contigP-wetherbeei_contig57221:111..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1380394.JADL01000011_gene3999
Model size402
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.73e-16
EggNOG OGsCOG0596@1|root,COG0596@2|Bacteria,1QWWW@1224|Proteobacteria,2U88T@28211|Alphaproteobacteria,2JWF0@204441|Rhodospirillales
DescriptionAlpha/beta hydrolase family
Cds size402
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186849.0841348-CDS-P-wetherbeei_contig57221:110..5121683186849.0841348-CDS-P-wetherbeei_contig57221:110..512Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57221 111..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57221.1.1prot_P-wetherbeei_contig57221.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57221 111..512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57221.1.1

>prot_P-wetherbeei_contig57221.1.1 ID=prot_P-wetherbeei_contig57221.1.1|Name=mRNA_P-wetherbeei_contig57221.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
PGFGESDRPPAPINFAAVGKVVTAGLREILPSSAAFDLSGFSFGSHTIQY
VANAMGSRVGTAVLVTAHMLGPMLAQPSQLLERWRDVTDPAERERILKRN
LGSLMLAHEASMDPLALHIYASDVVRARIRPATF
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mRNA from alignment at P-wetherbeei_contig57221:111..512-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57221.1.1 ID=mRNA_P-wetherbeei_contig57221.1.1|Name=mRNA_P-wetherbeei_contig57221.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig57221:111..512- (Phaeothamnion wetherbeei SAG_119_79)
CCCGGGTTCGGCGAATCAGACCGCCCGCCTGCGCCCATCAACTTCGCCGC
CGTAGGCAAGGTGGTGACCGCCGGCCTGAGGGAGATCCTCCCGTCCAGTG
CGGCTTTCGATCTTTCCGGTTTCTCGTTCGGGTCGCATACGATCCAGTAT
GTCGCCAACGCGATGGGGAGCAGGGTCGGGACGGCGGTGCTCGTCACCGC
CCACATGCTCGGGCCGATGCTGGCACAACCCAGCCAGCTGCTCGAACGCT
GGCGCGACGTGACGGACCCCGCCGAACGCGAGCGCATCCTGAAGCGCAAT
CTGGGCTCGCTGATGCTGGCGCACGAGGCGAGCATGGACCCGCTGGCGCT
CCACATCTACGCGAGCGATGTCGTCAGGGCGCGTATCCGCCCCGCGACCT
TC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57221:111..512-

>mRNA_P-wetherbeei_contig57221.1.1 ID=mRNA_P-wetherbeei_contig57221.1.1|Name=mRNA_P-wetherbeei_contig57221.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig57221:111..512- (Phaeothamnion wetherbeei SAG_119_79)
CCCGGGTTCGGCGAATCAGACCGCCCGCCTGCGCCCATCAACTTCGCCGC
CGTAGGCAAGGTGGTGACCGCCGGCCTGAGGGAGATCCTCCCGTCCAGTG
CGGCTTTCGATCTTTCCGGTTTCTCGTTCGGGTCGCATACGATCCAGTAT
GTCGCCAACGCGATGGGGAGCAGGGTCGGGACGGCGGTGCTCGTCACCGC
CCACATGCTCGGGCCGATGCTGGCACAACCCAGCCAGCTGCTCGAACGCT
GGCGCGACGTGACGGACCCCGCCGAACGCGAGCGCATCCTGAAGCGCAAT
CTGGGCTCGCTGATGCTGGCGCACGAGGCGAGCATGGACCCGCTGGCGCT
CCACATCTACGCGAGCGATGTCGTCAGGGCGCGTATCCGCCCCGCGACCT
TC
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