mRNA_P-wetherbeei_contig57204.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57204.1.1
Unique NamemRNA_P-wetherbeei_contig57204.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57204.1.1 vs. uniprot
Match: A0A8F4J8C4_9ACTN (Uncharacterized protein n=1 Tax=Aquihabitans sp. G128 TaxID=2849779 RepID=A0A8F4J8C4_9ACTN)

HSP 1 Score: 113 bits (283), Expect = 8.930e-28
Identity = 60/93 (64.52%), Postives = 69/93 (74.19%), Query Frame = 1
Query:   76 PAAPVDPMSIVVQPAVAVTAVSTDATLRTADGRDRTYHVFVPDDLPAGES---VPLLIALHGGTGWGKQFERNSGFDGLAQANGFIVVYPDGV 345
            PA  VDP    V+PAVAV A + DATLRT DGR+RTYH+ VP  + AG     VPLL+ALHGGTG G QFER+SGF GLA+AN FIV YPDG+
Sbjct:   65 PAPVVDPDGTTVRPAVAVRARTVDATLRTPDGRERTYHLHVPPAVRAGTDGPRVPLLVALHGGTGSGLQFERSSGFSGLAEANDFIVAYPDGI 157          
BLAST of mRNA_P-wetherbeei_contig57204.1.1 vs. uniprot
Match: A0A7X9Q2D7_9ACTN (Alpha/beta fold hydrolase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9Q2D7_9ACTN)

HSP 1 Score: 100 bits (250), Expect = 5.700e-23
Identity = 46/65 (70.77%), Postives = 52/65 (80.00%), Query Frame = 1
Query:  151 TLRTADGRDRTYHVFVPDDLPAGESVPLLIALHGGTGWGKQFERNSGFDGLAQANGFIVVYPDGV 345
            TL TADGR R Y ++VP  LP    VPLL+A HGGTGWG QFE+NSGFD LA+ANGF+VVYPDGV
Sbjct:  103 TLVTADGRTRVYRIYVPSSLP-NSPVPLLLAFHGGTGWGAQFEKNSGFDELAEANGFLVVYPDGV 166          
BLAST of mRNA_P-wetherbeei_contig57204.1.1 vs. uniprot
Match: A0A524BKL5_9ACTO (Uncharacterized protein (Fragment) n=1 Tax=Actinomycetales bacterium mxb001 TaxID=1962179 RepID=A0A524BKL5_9ACTO)

HSP 1 Score: 92.8 bits (229), Expect = 3.970e-22
Identity = 48/78 (61.54%), Postives = 54/78 (69.23%), Query Frame = 1
Query:  112 QPAVAVTAVSTDATLRTADGRDRTYHVFVPDDLPAGESVPLLIALHGGTGWGKQFERNSGFDGLAQANGFIVVYPDGV 345
            +PA A     T+ TLRT DG +R+Y +FVP  L      PLL+ALHGG G G QFE NSGFDGLA ANGFIV YPDGV
Sbjct:   39 RPATAAMGTVTEHTLRTPDGLERSYRLFVPAGLTG--RAPLLLALHGGLGSGVQFETNSGFDGLATANGFIVAYPDGV 114          
BLAST of mRNA_P-wetherbeei_contig57204.1.1 vs. uniprot
Match: A0A6I3HBR1_9ACTN (Polyhydroxybutyrate depolymerase n=8 Tax=root TaxID=1 RepID=A0A6I3HBR1_9ACTN)

HSP 1 Score: 96.3 bits (238), Expect = 2.060e-21
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 1
Query:  145 DATLRTADGRDRTYHVFVPDDLPAGESVPLLIALHGGTGWGKQFERNSGFDGLAQANGFIVVYPDG 342
            + +LRT DGR RTY V+VP  LPAG  VPLL+A HGG G G+ FE NSG++GLA++NGF+V YPDG
Sbjct:   64 EGSLRTPDGRTRTYRVYVPSTLPAGARVPLLLAFHGGGGRGRGFEGNSGYNGLAESNGFVVAYPDG 129          
BLAST of mRNA_P-wetherbeei_contig57204.1.1 vs. uniprot
Match: A0A6I3A2X0_9ACTN (Uncharacterized protein n=6 Tax=root TaxID=1 RepID=A0A6I3A2X0_9ACTN)

HSP 1 Score: 95.9 bits (237), Expect = 3.190e-21
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 1
Query:  115 PAVAVTAVSTDATLRTADGRDRTYHVFVPDDLPAGESVPLLIALHGGTGWGKQFERNSGFDGLAQANGFIVVYPDGV 345
            PAVA T  S+   LRT DGR RTY ++VP  L A    PLL+ALHGG G   QFE NSGFDGLA++N F+V+YPDG+
Sbjct:   59 PAVAPTGQSSVGQLRTPDGRIRTYRLYVPASLDASTPAPLLVALHGGLGTSAQFEANSGFDGLAESNRFVVIYPDGI 135          
BLAST of mRNA_P-wetherbeei_contig57204.1.1 vs. uniprot
Match: A0A6I3C689_9ACTN (Alpha/beta fold hydrolase n=2 Tax=root TaxID=1 RepID=A0A6I3C689_9ACTN)

HSP 1 Score: 95.1 bits (235), Expect = 7.330e-21
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  139 STDATLRTADGRDRTYHVFVPDDLPAGESVPLLIALHGGTGWGKQFERNSGFDGLAQANGFIVVYPDGV 345
            S+   +RT DGR RTY V+VP  L AG+  PLL+ALHGG G   QFE NSGFD LA+AN F+VVYPDG+
Sbjct:   86 SSAGRIRTPDGRTRTYRVYVPSSLVAGQPAPLLVALHGGLGSSAQFEENSGFDALAEANRFVVVYPDGI 154          
BLAST of mRNA_P-wetherbeei_contig57204.1.1 vs. uniprot
Match: A0A6I2XCX0_9ACTN (Phospholipase n=2 Tax=root TaxID=1 RepID=A0A6I2XCX0_9ACTN)

HSP 1 Score: 94.0 bits (232), Expect = 1.450e-20
Identity = 43/64 (67.19%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  151 TLRTADGRDRTYHVFVPDDLPAGESVPLLIALHGGTGWGKQFERNSGFDGLAQANGFIVVYPDG 342
            ++ T DGR RTY ++VP    AG  +PLLIALHGG GWG QF  NSGFDGLA+AN FIVVYPDG
Sbjct:   66 SITTPDGRVRTYRLYVPTAAEAGGRLPLLIALHGGLGWGAQFATNSGFDGLAEANRFIVVYPDG 129          
BLAST of mRNA_P-wetherbeei_contig57204.1.1 vs. uniprot
Match: A0A6I3IC31_9ACTN (Polyhydroxybutyrate depolymerase n=4 Tax=root TaxID=1 RepID=A0A6I3IC31_9ACTN)

HSP 1 Score: 92.0 bits (227), Expect = 1.130e-19
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  142 TDATLRTADGRDRTYHVFVPDDLPAGESVPLLIALHGGTGWGKQFERNSGFDGLAQANGFIVVYPDG 342
            T+AT+ T DGR R Y  +VP  L  G  VPLL+ALHGG G  +QFE NSGFDGLA +N F+VVYPDG
Sbjct:  101 TEATITTPDGRVRRYRTYVPASLVVGTKVPLLVALHGGLGHAEQFETNSGFDGLADSNQFVVVYPDG 167          
BLAST of mRNA_P-wetherbeei_contig57204.1.1 vs. uniprot
Match: A0A7C1UCD0_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1UCD0_9ACTN)

HSP 1 Score: 89.4 bits (220), Expect = 8.940e-19
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 1
Query:  160 TADGRDRTYHVFVPDDLPAGESVPLLIALHGGTGWGKQFERNSGFDGLAQANGFIVVYPDGV 345
            T DGR R+YH++VP  L   E VPLL+ALHGG G G QFE++SGFD LA+ANGF+VVYPDG+
Sbjct:  131 TPDGRVRSYHLYVPSGL-GDEPVPLLVALHGGLGSGPQFEKDSGFDRLAEANGFVVVYPDGI 191          
BLAST of mRNA_P-wetherbeei_contig57204.1.1 vs. uniprot
Match: A0A7K0VF72_9ACTN (Polyhydroxybutyrate depolymerase n=4 Tax=root TaxID=1 RepID=A0A7K0VF72_9ACTN)

HSP 1 Score: 87.4 bits (215), Expect = 5.380e-18
Identity = 45/89 (50.56%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   79 AAPVDPMSIVVQPAVAVTAVSTDATLRTADGRDRTYHVFVPDDLPAGESVPLLIALHGGTGWGKQFERNSGFDGLAQANGFIVVYPDGV 345
            +A +DP +   +PA +     ++  L   DGR R + ++VP  L  GE+ PLLIALHGG G  +QF  NSGFD LA+ANGFIVVYPDG+
Sbjct:   75 SAELDPYATA-EPATSAVGKVSEEWLEAPDGRRRHFRLYVPTALRVGEAAPLLIALHGGLGTSEQFAVNSGFDELAEANGFIVVYPDGI 162          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57204.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F4J8C4_9ACTN8.930e-2864.52Uncharacterized protein n=1 Tax=Aquihabitans sp. G... [more]
A0A7X9Q2D7_9ACTN5.700e-2370.77Alpha/beta fold hydrolase n=1 Tax=Actinomycetia ba... [more]
A0A524BKL5_9ACTO3.970e-2261.54Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
A0A6I3HBR1_9ACTN2.060e-2163.64Polyhydroxybutyrate depolymerase n=8 Tax=root TaxI... [more]
A0A6I3A2X0_9ACTN3.190e-2159.74Uncharacterized protein n=6 Tax=root TaxID=1 RepID... [more]
A0A6I3C689_9ACTN7.330e-2162.32Alpha/beta fold hydrolase n=2 Tax=root TaxID=1 Rep... [more]
A0A6I2XCX0_9ACTN1.450e-2067.19Phospholipase n=2 Tax=root TaxID=1 RepID=A0A6I2XCX... [more]
A0A6I3IC31_9ACTN1.130e-1962.69Polyhydroxybutyrate depolymerase n=4 Tax=root TaxI... [more]
A0A7C1UCD0_9ACTN8.940e-1966.13Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A7K0VF72_9ACTN5.380e-1850.56Polyhydroxybutyrate depolymerase n=4 Tax=root TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57204contigP-wetherbeei_contig57204:152..496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog219305.MCAG_00496
Preferred namelpqP
PFAMsEsterase_phd
Model size345
Max annot lvl201174|Actinobacteria
KEGG koko:K03932
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.63e-11
EggNOG OGsCOG3509@1|root,COG3509@2|Bacteria,2GNV6@201174|Actinobacteria,4DE0P@85008|Micromonosporales
DescriptionEsterase PHB depolymerase
Cds size345
COG categoryQ
CAZyCE1
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186848.9160693-CDS-P-wetherbeei_contig57204:151..4961683186848.9160693-CDS-P-wetherbeei_contig57204:151..496Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57204 152..496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57204.1.1prot_P-wetherbeei_contig57204.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57204 152..496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57204.1.1

>prot_P-wetherbeei_contig57204.1.1 ID=prot_P-wetherbeei_contig57204.1.1|Name=mRNA_P-wetherbeei_contig57204.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
ITTTATNLATTTTSTAPTTSTTTTIPAAPVDPMSIVVQPAVAVTAVSTDA
TLRTADGRDRTYHVFVPDDLPAGESVPLLIALHGGTGWGKQFERNSGFDG
LAQANGFIVVYPDGV
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mRNA from alignment at P-wetherbeei_contig57204:152..496+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57204.1.1 ID=mRNA_P-wetherbeei_contig57204.1.1|Name=mRNA_P-wetherbeei_contig57204.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig57204:152..496+ (Phaeothamnion wetherbeei SAG_119_79)
ATCACGACGACCGCGACGAACCTGGCGACAACCACCACCTCGACGGCACC GACCACGAGCACGACGACCACGATTCCGGCGGCGCCCGTCGACCCGATGT CGATCGTCGTGCAACCGGCCGTCGCCGTCACTGCGGTCTCCACGGACGCC ACGCTGCGCACCGCGGACGGACGCGACCGCACCTATCACGTGTTCGTGCC CGACGACCTGCCTGCCGGCGAGTCCGTCCCGCTGCTGATCGCGCTACACG GCGGCACCGGATGGGGCAAGCAGTTCGAACGCAACAGCGGCTTCGACGGG CTGGCCCAGGCGAACGGGTTCATCGTGGTCTACCCCGACGGCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57204:152..496+

>mRNA_P-wetherbeei_contig57204.1.1 ID=mRNA_P-wetherbeei_contig57204.1.1|Name=mRNA_P-wetherbeei_contig57204.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig57204:152..496+ (Phaeothamnion wetherbeei SAG_119_79)
ATCACGACGACCGCGACGAACCTGGCGACAACCACCACCTCGACGGCACC
GACCACGAGCACGACGACCACGATTCCGGCGGCGCCCGTCGACCCGATGT
CGATCGTCGTGCAACCGGCCGTCGCCGTCACTGCGGTCTCCACGGACGCC
ACGCTGCGCACCGCGGACGGACGCGACCGCACCTATCACGTGTTCGTGCC
CGACGACCTGCCTGCCGGCGAGTCCGTCCCGCTGCTGATCGCGCTACACG
GCGGCACCGGATGGGGCAAGCAGTTCGAACGCAACAGCGGCTTCGACGGG
CTGGCCCAGGCGAACGGGTTCATCGTGGTCTACCCCGACGGCGTC
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