mRNA_P-wetherbeei_contig57016.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57016.1.1
Unique NamemRNA_P-wetherbeei_contig57016.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57016.1.1 vs. uniprot
Match: A0A537LBR4_9PROT (Acetoacetyl-CoA reductase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537LBR4_9PROT)

HSP 1 Score: 253 bits (646), Expect = 2.400e-83
Identity = 127/140 (90.71%), Postives = 133/140 (95.00%), Query Frame = 2
Query:    2 VYKWGVSSFGAGSAGLKQVEADLGPVDVLVNNAGITRDAPFHRMTPEQWNAVINTNLNSLFNMCRPVIEGMRARKFGRIVNVSSINGQKGQFGQSNYSAAKAGDLGFTKALALEGARAGITVNAICPGYINTEMVQAVPK 421
            VYKW VS++ A  AGLKQVEADLGPV+VLVNNAGITRDAPFHRMTP+QWN VINTNLNSLFNM RPV EGMRARKFGRIVN+SSINGQKGQFGQ+NYSAAKAGDLGFTKALALEGARAGITVNAICPGYINTEMVQAVPK
Sbjct:   51 VYKWDVSNYDACVAGLKQVEADLGPVEVLVNNAGITRDAPFHRMTPDQWNQVINTNLNSLFNMSRPVWEGMRARKFGRIVNISSINGQKGQFGQANYSAAKAGDLGFTKALALEGARAGITVNAICPGYINTEMVQAVPK 190          
BLAST of mRNA_P-wetherbeei_contig57016.1.1 vs. uniprot
Match: Q2J2U1_RHOP2 (3-oxoacyl-[acyl-carrier-protein] reductase n=12 Tax=Bradyrhizobiaceae TaxID=41294 RepID=Q2J2U1_RHOP2)

HSP 1 Score: 242 bits (617), Expect = 6.180e-79
Identity = 123/140 (87.86%), Postives = 128/140 (91.43%), Query Frame = 2
Query:    2 VYKWGVSSFGAGSAGLKQVEADLGPVDVLVNNAGITRDAPFHRMTPEQWNAVINTNLNSLFNMCRPVIEGMRARKFGRIVNVSSINGQKGQFGQSNYSAAKAGDLGFTKALALEGARAGITVNAICPGYINTEMVQAVPK 421
            VYKW VSSF A +AG+KQVEADLGPVDVLVNNAGITRD  FH+MT EQWNAVINTNL SLFNM R VIEGMRARKFGRIVN+SSINGQKGQFGQ NYSAAKAGD+GFTKALALE AR GITVNAICPGYINTEMVQAVPK
Sbjct:   51 VYKWDVSSFDACAAGVKQVEADLGPVDVLVNNAGITRDGAFHKMTLEQWNAVINTNLGSLFNMTRQVIEGMRARKFGRIVNISSINGQKGQFGQVNYSAAKAGDIGFTKALALENARGGITVNAICPGYINTEMVQAVPK 190          
BLAST of mRNA_P-wetherbeei_contig57016.1.1 vs. uniprot
Match: A0A418VI74_RHOPL (Acetoacetyl-CoA reductase n=6 Tax=Proteobacteria TaxID=1224 RepID=A0A418VI74_RHOPL)

HSP 1 Score: 241 bits (615), Expect = 1.240e-78
Identity = 121/140 (86.43%), Postives = 128/140 (91.43%), Query Frame = 2
Query:    2 VYKWGVSSFGAGSAGLKQVEADLGPVDVLVNNAGITRDAPFHRMTPEQWNAVINTNLNSLFNMCRPVIEGMRARKFGRIVNVSSINGQKGQFGQSNYSAAKAGDLGFTKALALEGARAGITVNAICPGYINTEMVQAVPK 421
            VYKW VSSF A +AG+KQVEADLGPVD+L+NNAGITRD  FH+MT EQWNAVINTNL SLFNM R VIEGMRARKFGRIVN+SSINGQKGQFGQ NYSAAKAGD+GFTKALALE AR GITVNAICPGYINTEMVQAVPK
Sbjct:   51 VYKWDVSSFDACAAGVKQVEADLGPVDILINNAGITRDTAFHKMTLEQWNAVINTNLGSLFNMTRQVIEGMRARKFGRIVNISSINGQKGQFGQVNYSAAKAGDIGFTKALALENARGGITVNAICPGYINTEMVQAVPK 190          
BLAST of mRNA_P-wetherbeei_contig57016.1.1 vs. uniprot
Match: Q13EE6_RHOPS (3-oxoacyl-[acyl-carrier-protein] reductase n=3 Tax=Bradyrhizobiaceae TaxID=41294 RepID=Q13EE6_RHOPS)

HSP 1 Score: 241 bits (614), Expect = 1.770e-78
Identity = 121/140 (86.43%), Postives = 128/140 (91.43%), Query Frame = 2
Query:    2 VYKWGVSSFGAGSAGLKQVEADLGPVDVLVNNAGITRDAPFHRMTPEQWNAVINTNLNSLFNMCRPVIEGMRARKFGRIVNVSSINGQKGQFGQSNYSAAKAGDLGFTKALALEGARAGITVNAICPGYINTEMVQAVPK 421
            VYKW VSSF A +AG+KQVEADLGPVD+LVNNAGITRD  FH+MT EQWNAVINTNL SLFNM R VIEGMRARKFGRIVN+SS+NGQKGQFGQ NYSAAKAGD+GFTKALALE AR GITVNAICPGYINTEMVQAVPK
Sbjct:   51 VYKWDVSSFEACAAGVKQVEADLGPVDILVNNAGITRDGAFHKMTLEQWNAVINTNLGSLFNMTRQVIEGMRARKFGRIVNISSVNGQKGQFGQVNYSAAKAGDIGFTKALALENARGGITVNAICPGYINTEMVQAVPK 190          
BLAST of mRNA_P-wetherbeei_contig57016.1.1 vs. uniprot
Match: UPI001BC77452 (Acetoacetyl-CoA reductase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI001BC77452)

HSP 1 Score: 238 bits (608), Expect = 1.440e-77
Identity = 119/140 (85.00%), Postives = 127/140 (90.71%), Query Frame = 2
Query:    2 VYKWGVSSFGAGSAGLKQVEADLGPVDVLVNNAGITRDAPFHRMTPEQWNAVINTNLNSLFNMCRPVIEGMRARKFGRIVNVSSINGQKGQFGQSNYSAAKAGDLGFTKALALEGARAGITVNAICPGYINTEMVQAVPK 421
            VYKW VSSF A + G+K+VEADLGPVDVLVNNAGITRDA  HRMT EQWN VI TNLNSLFNMCRPVIEGMR RKFGRI+N+SSINGQKGQ GQ+NYSAAKAGD+GFTKALA E A+AGITVNAICPGYINTEMVQAVPK
Sbjct:   51 VYKWDVSSFDACAEGIKKVEADLGPVDVLVNNAGITRDAMLHRMTVEQWNQVITTNLNSLFNMCRPVIEGMRNRKFGRIINISSINGQKGQMGQTNYSAAKAGDIGFTKALAQESAKAGITVNAICPGYINTEMVQAVPK 190          
BLAST of mRNA_P-wetherbeei_contig57016.1.1 vs. uniprot
Match: A0A1Q4DME5_9HYPH (Beta-ketoacyl-ACP reductase n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DME5_9HYPH)

HSP 1 Score: 238 bits (607), Expect = 2.050e-77
Identity = 118/140 (84.29%), Postives = 126/140 (90.00%), Query Frame = 2
Query:    2 VYKWGVSSFGAGSAGLKQVEADLGPVDVLVNNAGITRDAPFHRMTPEQWNAVINTNLNSLFNMCRPVIEGMRARKFGRIVNVSSINGQKGQFGQSNYSAAKAGDLGFTKALALEGARAGITVNAICPGYINTEMVQAVPK 421
            VYKW VSSF A S G+KQVE DLGPV+VLVNNAGITRDA  HRM PEQW AVINTNL SLFNMCRP+IEGMR RKFGRI+N+SSINGQKGQ GQ+NYSAAKAGD+GFTKALA E A+AGITVNAICPGYINTEMVQAVPK
Sbjct:   51 VYKWDVSSFEACSEGIKQVETDLGPVEVLVNNAGITRDAMLHRMKPEQWTAVINTNLGSLFNMCRPLIEGMRTRKFGRIINISSINGQKGQMGQTNYSAAKAGDIGFTKALAQESAKAGITVNAICPGYINTEMVQAVPK 190          
BLAST of mRNA_P-wetherbeei_contig57016.1.1 vs. uniprot
Match: A0A537SYM3_9PROT (Acetoacetyl-CoA reductase n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A537SYM3_9PROT)

HSP 1 Score: 237 bits (604), Expect = 5.850e-77
Identity = 116/140 (82.86%), Postives = 128/140 (91.43%), Query Frame = 2
Query:    2 VYKWGVSSFGAGSAGLKQVEADLGPVDVLVNNAGITRDAPFHRMTPEQWNAVINTNLNSLFNMCRPVIEGMRARKFGRIVNVSSINGQKGQFGQSNYSAAKAGDLGFTKALALEGARAGITVNAICPGYINTEMVQAVPK 421
            VYKW VSSF A +AG+K++EA+LGPVDVLVNNAGITRD  FH+MTPEQW AVINTNL SLFNM R VIEGMRARKFGR++N+SSINGQKGQFGQ NYS+AKAGD+GFTKALALE A+ GITVNAICPGYINTEMVQAVPK
Sbjct:   51 VYKWDVSSFDACAAGVKKIEAELGPVDVLVNNAGITRDGAFHKMTPEQWTAVINTNLGSLFNMTRQVIEGMRARKFGRVINISSINGQKGQFGQVNYSSAKAGDIGFTKALALENAKGGITVNAICPGYINTEMVQAVPK 190          
BLAST of mRNA_P-wetherbeei_contig57016.1.1 vs. uniprot
Match: A0A1B9YSZ7_9BRAD (Beta-ketoacyl-ACP reductase n=1 Tax=Bradyrhizobium sp. LMTR 3 TaxID=189873 RepID=A0A1B9YSZ7_9BRAD)

HSP 1 Score: 236 bits (603), Expect = 8.300e-77
Identity = 115/140 (82.14%), Postives = 128/140 (91.43%), Query Frame = 2
Query:    2 VYKWGVSSFGAGSAGLKQVEADLGPVDVLVNNAGITRDAPFHRMTPEQWNAVINTNLNSLFNMCRPVIEGMRARKFGRIVNVSSINGQKGQFGQSNYSAAKAGDLGFTKALALEGARAGITVNAICPGYINTEMVQAVPK 421
            VYKW VSSF A + G+K+VEADLGP+DVLVNNAGIT+D  FH+MT +QWNAVINTNL SLFNM RPVIEGMRARKFGRI+N+SSINGQKGQFGQ NYSAAKAGD+GFTKALALE A+ G+TVNAICPGY+NTEMVQAVPK
Sbjct:   51 VYKWDVSSFDACTDGIKKVEADLGPIDVLVNNAGITKDGAFHKMTLDQWNAVINTNLGSLFNMTRPVIEGMRARKFGRIINISSINGQKGQFGQVNYSAAKAGDIGFTKALALENAKGGVTVNAICPGYVNTEMVQAVPK 190          
BLAST of mRNA_P-wetherbeei_contig57016.1.1 vs. uniprot
Match: W3RMQ9_9BRAD (Acetoacetyl-CoA reductase n=1 Tax=Afipia sp. P52-10 TaxID=1429916 RepID=W3RMQ9_9BRAD)

HSP 1 Score: 236 bits (602), Expect = 1.180e-76
Identity = 117/140 (83.57%), Postives = 126/140 (90.00%), Query Frame = 2
Query:    2 VYKWGVSSFGAGSAGLKQVEADLGPVDVLVNNAGITRDAPFHRMTPEQWNAVINTNLNSLFNMCRPVIEGMRARKFGRIVNVSSINGQKGQFGQSNYSAAKAGDLGFTKALALEGARAGITVNAICPGYINTEMVQAVPK 421
            VYKW V SF A   G+K+VEADLGPVD+LVNNAGITRD PFH+MT EQWNAV+NTNL SLFNM R VIEGMRAR+FGRI+N+SSINGQKGQFGQ NYSAAKAGD+GFTKALALE ARAGITVN ICPGYINTEMVQAVPK
Sbjct:   51 VYKWDVGSFDACGEGIKKVEADLGPVDILVNNAGITRDTPFHKMTVEQWNAVMNTNLGSLFNMTRHVIEGMRARRFGRIINISSINGQKGQFGQVNYSAAKAGDIGFTKALALETARAGITVNVICPGYINTEMVQAVPK 190          
BLAST of mRNA_P-wetherbeei_contig57016.1.1 vs. uniprot
Match: A5ETG5_BRASB (3-oxoacyl-[acyl-carrier-protein] reductase n=13 Tax=Hyphomicrobiales TaxID=356 RepID=A5ETG5_BRASB)

HSP 1 Score: 236 bits (601), Expect = 1.670e-76
Identity = 117/140 (83.57%), Postives = 128/140 (91.43%), Query Frame = 2
Query:    2 VYKWGVSSFGAGSAGLKQVEADLGPVDVLVNNAGITRDAPFHRMTPEQWNAVINTNLNSLFNMCRPVIEGMRARKFGRIVNVSSINGQKGQFGQSNYSAAKAGDLGFTKALALEGARAGITVNAICPGYINTEMVQAVPK 421
            VYKW VSSF A + G+K+VEA+LGPVD+LVNNAGITRD  FH+MT EQW+AVINTNL SLFNM RPVIEGMRARKFGRI+N+SSINGQKGQFGQ NYSAAKAGD+GFTKALALE A+AGITVN ICPGYINTEMVQAVPK
Sbjct:   51 VYKWDVSSFDACAEGIKKVEAELGPVDILVNNAGITRDTAFHKMTLEQWSAVINTNLGSLFNMTRPVIEGMRARKFGRIINISSINGQKGQFGQVNYSAAKAGDIGFTKALALETAKAGITVNVICPGYINTEMVQAVPK 190          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57016.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537LBR4_9PROT2.400e-8390.71Acetoacetyl-CoA reductase n=1 Tax=Alphaproteobacte... [more]
Q2J2U1_RHOP26.180e-7987.863-oxoacyl-[acyl-carrier-protein] reductase n=12 Ta... [more]
A0A418VI74_RHOPL1.240e-7886.43Acetoacetyl-CoA reductase n=6 Tax=Proteobacteria T... [more]
Q13EE6_RHOPS1.770e-7886.433-oxoacyl-[acyl-carrier-protein] reductase n=3 Tax... [more]
UPI001BC774521.440e-7785.00Acetoacetyl-CoA reductase n=1 Tax=Hyphomicrobiales... [more]
A0A1Q4DME5_9HYPH2.050e-7784.29Beta-ketoacyl-ACP reductase n=1 Tax=Rhizobiales ba... [more]
A0A537SYM3_9PROT5.850e-7782.86Acetoacetyl-CoA reductase n=5 Tax=Alphaproteobacte... [more]
A0A1B9YSZ7_9BRAD8.300e-7782.14Beta-ketoacyl-ACP reductase n=1 Tax=Bradyrhizobium... [more]
W3RMQ9_9BRAD1.180e-7683.57Acetoacetyl-CoA reductase n=1 Tax=Afipia sp. P52-1... [more]
A5ETG5_BRASB1.670e-7683.573-oxoacyl-[acyl-carrier-protein] reductase n=13 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57016contigP-wetherbeei_contig57016:56..478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1117943.SFHH103_02255
Preferred namexdhA
PFAMsCO_deh_flav_C,FAD_binding_5,Fer2,Fer2_2
Model size423
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00143
KEGG koko:K13481
KEGG ReactionR01768,R02103
KEGG Pathwayko00230,ko01100,ko01120,map00230,map01100,map01120
KEGG ModuleM00546
Hectar predicted targeting categorymitochondrion
Exons1
Evalue1.78e-06
EggNOG OGsCOG4630@1|root,COG4630@2|Bacteria,1MWI1@1224|Proteobacteria,2TR3Q@28211|Alphaproteobacteria,4B8S5@82115|Rhizobiaceae
EC1.17.1.4
DescriptionXanthine dehydrogenase
Cds size414
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186846.4324355-CDS-P-wetherbeei_contig57016:55..4691683186846.4324355-CDS-P-wetherbeei_contig57016:55..469Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57016 56..469 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186846.4423115-UTR-P-wetherbeei_contig57016:469..4781683186846.4423115-UTR-P-wetherbeei_contig57016:469..478Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig57016 470..478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57016.1.1prot_P-wetherbeei_contig57016.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57016 56..469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57016.1.1

>prot_P-wetherbeei_contig57016.1.1 ID=prot_P-wetherbeei_contig57016.1.1|Name=mRNA_P-wetherbeei_contig57016.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
MGRLVLRRWFGRAEAGRGRSRAGRRAGQQCRHHPRRPVPSDDPGAVERRH
QHQSEFAVQYVPAGDRGHAGAQIRPHRQCLLDQWPEGPVRPVELFRRQGR
RSRLHQGPGAGRRARRHHRQCDLPRLYQHGNGAGGAEG
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mRNA from alignment at P-wetherbeei_contig57016:56..478-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57016.1.1 ID=mRNA_P-wetherbeei_contig57016.1.1|Name=mRNA_P-wetherbeei_contig57016.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig57016:56..478- (Phaeothamnion wetherbeei SAG_119_79)
GGTCTACAAATGGGGCGTCTCGTCCTTCGGCGCTGGTTCGGCCGGGCTGA AGCAGGTCGAGGCCGATCTCGGGCCGGTCGACGTGCTGGTCAACAATGCC GGCATCACCCGCGACGCCCCGTTCCATCGGATGACCCCGGAGCAGTGGAA CGCCGTCATCAACACCAATCTGAATTCGCTGTTCAATATGTGCCGGCCGG TGATCGAGGGCATGCGGGCGCGCAAATTCGGCCGCATCGTCAATGTCTCC TCGATCAATGGCCAGAAGGGCCAGTTCGGCCAGTCGAATTATTCCGCCGC CAAGGCCGGCGATCTCGGCTTCACCAAGGCCCTGGCGCTGGAAGGCGCGC GCGCCGGCATCACCGTCAATGCGATCTGCCCCGGTTATATCAACACGGAA ATGGTGCAGGCGGTGCCGAAGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57016:56..478-

>mRNA_P-wetherbeei_contig57016.1.1 ID=mRNA_P-wetherbeei_contig57016.1.1|Name=mRNA_P-wetherbeei_contig57016.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig57016:56..478- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGCGTCTCGTCCTTCGGCGCTGGTTCGGCCGGGCTGAAGCAGGTCG
AGGCCGATCTCGGGCCGGTCGACGTGCTGGTCAACAATGCCGGCATCACC
CGCGACGCCCCGTTCCATCGGATGACCCCGGAGCAGTGGAACGCCGTCAT
CAACACCAATCTGAATTCGCTGTTCAATATGTGCCGGCCGGTGATCGAGG
GCATGCGGGCGCGCAAATTCGGCCGCATCGTCAATGTCTCCTCGATCAAT
GGCCAGAAGGGCCAGTTCGGCCAGTCGAATTATTCCGCCGCCAAGGCCGG
CGATCTCGGCTTCACCAAGGCCCTGGCGCTGGAAGGCGCGCGCGCCGGCA
TCACCGTCAATGCGATCTGCCCCGGTTATATCAACACGGAAATGGTGCAG
GCGGTGCCGAAGGA
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